UHGV-2161435

Genome information

Genome length 27,618 bps

CDS count 38

Completeness 78.15% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-2161435
vOTU ID	vOTU-041493
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029723\|Ga0245231_100374\|provirus_127_27744
BioSample	SAMEA3449283
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.06
Jumbo phage	No

Genome content
Genome length	27,618 bps
GC content	58.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	93.06%
Average CDS length	680.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2161435_1	UniRef90	UniRef90_UPI001D0E65C2	NA	NA
UHGV-2161435_1	Structural annotation	PF12957	NA	NA
UHGV-2161435_2	Structural annotation	PF03677	NA	NA
UHGV-2161435_3	PHROG	phrog_674	NA	unknown function
UHGV-2161435_3	UniRef90	UniRef90_A0A3A6E846	NA	NA
UHGV-2161435_3	eggNOG-mapper	556268.OFAG_00840	NA	NA
UHGV-2161435_3	Pfam	PF07083	NA	DUF1351
UHGV-2161435_3	Structural annotation	PF07083	NA	NA
UHGV-2161435_4	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2161435_4	UniRef90	UniRef90_A0A3A6EAW6	Phage recombination protein Bet	NA
UHGV-2161435_4	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-2161435_4	Pfam	PF03837	RecT family	RecT
UHGV-2161435_4	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-2161435_4	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2161435_4	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2161435_5	UniRef90	UniRef90_UPI001CBB85F6	single-stranded DNA-binding protein	NA
UHGV-2161435_5	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-2161435_6	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2161435_6	UniRef90	UniRef90_A0A291T890	DnaB_2 domain-containing protein	NA
UHGV-2161435_6	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-2161435_6	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2161435_6	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-2161435_7	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2161435_7	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-2161435_7	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-2161435_7	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2161435_8	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-2161435_9	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2161435_9	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2161435_9	UniRef90	UniRef90_A0A3A6JQY9	Terminase small subunit	NA
UHGV-2161435_9	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-2161435_9	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2161435_9	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2161435_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2161435_10	PHROG	phrog_10250	NA	unknown function
UHGV-2161435_10	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-2161435_10	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-2161435_10	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2161435_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-2161435_10	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2161435_11	PHROG	phrog_533	portal protein	head and packaging
UHGV-2161435_11	UniRef90	UniRef90_E2ZNR0	Putative phage minor capsid protein	NA
UHGV-2161435_11	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-2161435_11	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2161435_12	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2161435_12	UniRef90	UniRef90_UPI001CBDED93	phage minor capsid protein	NA
UHGV-2161435_12	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-2161435_12	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2161435_12	COG	COG2369	NA	NA
UHGV-2161435_12	Structural annotation	PF06152	NA	NA
UHGV-2161435_14	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-2161435_14	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-2161435_14	Structural annotation	PF01402, COG4710	NA	NA
UHGV-2161435_16	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2161435_16	UniRef90	UniRef90_A0A7W0C2S3	Putative transcriptional regulator	NA
UHGV-2161435_16	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-2161435_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2161435_17	UniRef90	UniRef90_E6U604	Minor structural GP20 protein	NA
UHGV-2161435_17	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-2161435_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2161435_17	Structural annotation	PF06810	NA	NA
UHGV-2161435_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-2161435_18	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-2161435_18	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-2161435_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2161435_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2161435_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2161435_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2161435_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2161435_20	PHROG	phrog_3366	NA	unknown function
UHGV-2161435_20	Structural annotation	PF20536	NA	NA
UHGV-2161435_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2161435_21	UniRef90	UniRef90_A0A2A6Z736	Capsid protein	NA
UHGV-2161435_21	eggNOG-mapper	748224.HMPREF9436_03332	Minor capsid protein	NA
UHGV-2161435_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2161435_21	Structural annotation	PF11114	NA	NA
UHGV-2161435_22	PHROG	phrog_3266	tail completion	connector
UHGV-2161435_22	UniRef90	UniRef90_UPI000D830B30	chloramphenicol resistance protein	NA
UHGV-2161435_22	eggNOG-mapper	748224.HMPREF9436_03331	NA	NA
UHGV-2161435_22	Structural annotation	PF12691	NA	NA
UHGV-2161435_23	PHROG	phrog_820	major tail protein	tail
UHGV-2161435_23	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-2161435_23	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-2161435_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2161435_24	PHROG	phrog_4450	NA	unknown function
UHGV-2161435_24	Structural annotation	PF20378	NA	NA
UHGV-2161435_25	PHROG	phrog_706	NA	unknown function
UHGV-2161435_25	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-2161435_25	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-2161435_25	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2161435_25	Structural annotation	PF06854	NA	NA
UHGV-2161435_26	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-2161435_26	UniRef90	UniRef90_A0A3F3JUJ4	TMP_3 domain-containing protein	NA
UHGV-2161435_26	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-2161435_26	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2161435_26	COG	COG5283	Phage-related tail protein	NA
UHGV-2161435_26	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2161435_27	PHROG	phrog_36410	NA	unknown function
UHGV-2161435_27	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-2161435_27	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-2161435_27	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2161435_28	PHROG	phrog_538	minor tail protein	tail
UHGV-2161435_28	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2161435_28	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-2161435_28	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2161435_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2161435_29	PHROG	phrog_9534	head protein	head and packaging
UHGV-2161435_29	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-2161435_29	Structural annotation	PF20747	NA	NA
UHGV-2161435_30	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-2161435_30	COG	COG5492	NA	NA
UHGV-2161435_31	PHROG	phrog_29248	NA	unknown function
UHGV-2161435_32	PHROG	phrog_2310	NA	unknown function
UHGV-2161435_33	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2161435_33	PHROG	phrog_894	endolysin	lysis
UHGV-2161435_33	UniRef90	UniRef90_A0A1C5NY12	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-2161435_33	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-2161435_33	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2161435_33	COG	COG3108	NA	NA
UHGV-2161435_33	Structural annotation	PF05951, COG3108	NA	NA
UHGV-2161435_34	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2161435_34	UniRef90	UniRef90_A0A3E2XB99	NA	NA
UHGV-2161435_34	eggNOG-mapper	748224.HMPREF9436_01411	NA	NA
UHGV-2161435_34	Pfam	PF14359	NA	DUF4406
UHGV-2161435_34	Structural annotation	PF14359	NA	NA
UHGV-2161435_36	PHROG	phrog_4105	NA	unknown function
UHGV-2161435_36	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-2161435_37	PHROG	phrog_263	holin	lysis
UHGV-2161435_37	UniRef90	UniRef90_E2ZIC2	Holin, SPP1 family	NA
UHGV-2161435_37	eggNOG-mapper	748224.HMPREF9436_01413	SPP1 phage holin	NA
UHGV-2161435_37	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2161435_37	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2161435_37	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-2161435_38	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-2161435_38	PHROG	phrog_24603	NA	unknown function
UHGV-2161435_38	UniRef90	UniRef90_E2ZIC9	Spo0A_C domain-containing protein	NA
UHGV-2161435_38	eggNOG-mapper	1226322.HMPREF1545_01110	Sporulation initiation factor Spo0A C terminal	NA
UHGV-2161435_38	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-2161435_38	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-2161435_38	Structural annotation	PF08769, TIGR02875	NA	NA