UHGV-2161874

Genome information

Genome length 36,384 bps

CDS count 53

Completeness 86.79% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-2161874
vOTU ID	vOTU-015368
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029722\|Ga0245188_100050\|provirus_79326_115709
BioSample	SAMEA3449240
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.9
Jumbo phage	No

Genome content
Genome length	36,384 bps
GC content	57.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	89.10%
Average CDS length	615.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2161874_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2161874_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2161874_1	UniRef90	UniRef90_UPI001064F2E2	S24 family peptidase	NA
UHGV-2161874_1	eggNOG-mapper	999413.HMPREF1094_00245	Peptidase S24-like	NA
UHGV-2161874_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2161874_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2161874_1	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2161874_1	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-2161874_2	UniRef90	UniRef90_UPI001066FBF8	XRE family transcriptional regulator	NA
UHGV-2161874_2	eggNOG-mapper	293826.Amet_0839	NA	NA
UHGV-2161874_2	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-2161874_7	PHROG	phrog_750	NA	unknown function
UHGV-2161874_7	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-2161874_7	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2161874_11	KOfam	K07497	K07497; putative transposase	NA
UHGV-2161874_11	PHROG	phrog_310	transposase	integration and excision
UHGV-2161874_11	UniRef90	UniRef90_UPI0019686FF5	Mu transposase C-terminal domain-containing protein	NA
UHGV-2161874_11	eggNOG-mapper	665956.HMPREF1032_04085	Mu transposase, C-terminal	NA
UHGV-2161874_11	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-2161874_11	Pfam	PF00665	Integrase core domain	rve
UHGV-2161874_11	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-2161874_11	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-2161874_11	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-2161874_12	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-2161874_12	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-2161874_12	UniRef90	UniRef90_G9RT01	AAA domain-containing protein	NA
UHGV-2161874_12	eggNOG-mapper	665956.HMPREF1032_04086	AAA domain	NA
UHGV-2161874_12	Pfam	PF13401	AAA domain	AAA_22
UHGV-2161874_12	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-2161874_12	Structural annotation	PF13401, PF09077, PF12844, MF_01407, TIGR03015, TIGR02607, COG2842	NA	NA
UHGV-2161874_14	PHROG	phrog_2717	NA	unknown function
UHGV-2161874_14	eggNOG-mapper	665956.HMPREF1032_02973	NA	NA
UHGV-2161874_16	Structural annotation	PF06657	NA	NA
UHGV-2161874_18	AcrCatalog	cluster_167795	NA	NA
UHGV-2161874_19	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2161874_19	UniRef90	UniRef90_A0A6N3F7T2	Bacteriophage Mu Gam like protein	NA
UHGV-2161874_19	eggNOG-mapper	665956.HMPREF1032_04094	Bacteriophage Mu Gam like protein	NA
UHGV-2161874_19	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-2161874_19	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-2161874_19	Structural annotation	PF07352, COG4396	NA	NA
UHGV-2161874_20	PHROG	phrog_286	NA	unknown function
UHGV-2161874_20	UniRef90	UniRef90_UPI000A7FF2BA	NA	NA
UHGV-2161874_20	eggNOG-mapper	665956.HMPREF1032_01635	NA	NA
UHGV-2161874_20	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-2161874_20	Structural annotation	PF06252	NA	NA
UHGV-2161874_21	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-2161874_21	UniRef90	UniRef90_G9RN15	Mor domain-containing protein	NA
UHGV-2161874_21	eggNOG-mapper	665956.HMPREF1032_01634	Mor transcription activator family	NA
UHGV-2161874_21	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-2161874_21	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-2161874_22	UniRef90	UniRef90_A0A372V349	NA	NA
UHGV-2161874_22	eggNOG-mapper	665956.HMPREF1032_01633	NA	NA
UHGV-2161874_23	PHROG	phrog_25462	NA	unknown function
UHGV-2161874_23	UniRef90	UniRef90_A0A349GP70	Type VI secretion protein	NA
UHGV-2161874_23	eggNOG-mapper	665956.HMPREF1032_04098	NA	NA
UHGV-2161874_23	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-2161874_24	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-2161874_24	UniRef90	UniRef90_UPI000AA50A3B	NA	NA
UHGV-2161874_24	eggNOG-mapper	665956.HMPREF1032_02960	NA	NA
UHGV-2161874_24	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-2161874_24	Structural annotation	PF11985	NA	NA
UHGV-2161874_25	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-2161874_25	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-2161874_25	UniRef90	UniRef90_A0A372UYS2	Antitermination protein NusG	NA
UHGV-2161874_25	eggNOG-mapper	665956.HMPREF1032_01630	Transcription termination factor nusG	NA
UHGV-2161874_25	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-2161874_25	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-2161874_25	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-2161874_27	PHROG	phrog_24579	terminase small subunit	head and packaging
UHGV-2161874_27	UniRef90	UniRef90_A0A1Y4TKH5	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-2161874_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2161874_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2161874_28	UniRef90	UniRef90_A0A0D8J425	Terminase	NA
UHGV-2161874_28	eggNOG-mapper	411471.SUBVAR_06998	Phage terminase, large subunit, PBSX family	NA
UHGV-2161874_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2161874_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2161874_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2161874_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-2161874_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2161874_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-2161874_30	UniRef90	UniRef90_D1PRG7	Putative phage minor capsid protein	NA
UHGV-2161874_30	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-2161874_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2161874_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2161874_31	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-2161874_31	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-2161874_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2161874_31	COG	COG2369	NA	NA
UHGV-2161874_31	Structural annotation	PF06152	NA	NA
UHGV-2161874_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2161874_33	UniRef90	UniRef90_A0A4R1QTK7	Minor structural protein GP20	NA
UHGV-2161874_33	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-2161874_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2161874_33	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2161874_34	PHROG	phrog_422	major head protein	head and packaging
UHGV-2161874_34	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-2161874_34	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2161874_35	PHROG	phrog_10541	NA	unknown function
UHGV-2161874_35	UniRef90	UniRef90_A0A0D8J3S8	Rho_N domain-containing protein	NA
UHGV-2161874_35	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-2161874_35	COG	COG5492	NA	NA
UHGV-2161874_35	Structural annotation	PF09124	NA	NA
UHGV-2161874_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2161874_36	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-2161874_36	Pfam	PF13262	NA	DUF4054
UHGV-2161874_37	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2161874_38	UniRef90	UniRef90_UPI0019D0AD4B	minor capsid protein	NA
UHGV-2161874_38	eggNOG-mapper	936375.HMPREF1152_1079	NA	NA
UHGV-2161874_38	Structural annotation	PF11114	NA	NA
UHGV-2161874_39	PHROG	phrog_3266	tail completion	connector
UHGV-2161874_39	eggNOG-mapper	1160721.RBI_II00533	NA	NA
UHGV-2161874_39	Structural annotation	PF20765	NA	NA
UHGV-2161874_40	PHROG	phrog_820	major tail protein	tail
UHGV-2161874_40	UniRef90	UniRef90_UPI001140540A	capsid protein	NA
UHGV-2161874_40	eggNOG-mapper	997296.PB1_16179	domain, Protein	NA
UHGV-2161874_40	COG	COG5492	NA	NA
UHGV-2161874_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2161874_42	PHROG	phrog_706	NA	unknown function
UHGV-2161874_42	UniRef90	UniRef90_A0A1I0GR35	Bacteriophage Gp15 protein	NA
UHGV-2161874_42	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-2161874_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2161874_43	PHROG	phrog_23464	NA	unknown function
UHGV-2161874_43	eggNOG-mapper	1462526.BN990_01862	Phage tail tape measure protein TP901	NA
UHGV-2161874_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2161874_43	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-2161874_44	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-2161874_44	eggNOG-mapper	1161901.I1TLF2_9CAUD	NA	NA
UHGV-2161874_44	Structural annotation	PF02010, PF06995, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-2161874_45	PHROG	phrog_26795	NA	unknown function
UHGV-2161874_45	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-2161874_45	eggNOG-mapper	1382315.JPOI01000001_gene271	NA	NA
UHGV-2161874_45	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2161874_47	PHROG	phrog_1419	tail protein	tail
UHGV-2161874_47	UniRef90	UniRef90_UPI001966D481	tail fiber protein	NA
UHGV-2161874_47	eggNOG-mapper	378806.STAUR_2852	tail collar domain protein	NA
UHGV-2161874_47	COG	COG4675	Phage tail collar domain	NA
UHGV-2161874_47	Structural annotation	PF10651, COG4675	NA	NA
UHGV-2161874_49	KOfam	K14059	int; integrase	NA
UHGV-2161874_49	PHROG	phrog_1	integrase	integration and excision
UHGV-2161874_49	UniRef90	UniRef90_A0A0D8IYN9	Tyr recombinase domain-containing protein	NA
UHGV-2161874_49	eggNOG-mapper	665956.HMPREF1032_02930	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2161874_49	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2161874_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2161874_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2161874_49	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2161874_50	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-2161874_50	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-2161874_50	UniRef90	UniRef90_A0A372V0X2	SH3b domain-containing protein	NA
UHGV-2161874_50	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-2161874_50	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2161874_50	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2161874_50	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2161874_51	PHROG	phrog_20258	NA	unknown function
UHGV-2161874_51	eggNOG-mapper	665956.HMPREF1032_02927	NA	NA
UHGV-2161874_52	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2161874_52	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2161874_52	UniRef90	UniRef90_G9RTP2	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-2161874_52	eggNOG-mapper	665956.HMPREF1032_02926	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2161874_52	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-2161874_52	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2161874_52	COG	COG0338	DNA-adenine methylase	NA
UHGV-2161874_52	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-2161874_53	UniRef90	UniRef90_A0A372V143	NA	NA
UHGV-2161874_53	eggNOG-mapper	1540257.JQMW01000013_gene1296	NA	NA
UHGV-2161874_53	Pfam	PF04447	dATP/dGTP pyrophosphohydrolase	dATP-dGTP_PPHyd