UHGV-2162345

Genome information

Genome length 26,936 bps

CDS count 39

Completeness 66.09% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-2162345
vOTU ID	vOTU-042145
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029748\|Ga0245205_1000044\|provirus_171103_198038
BioSample	SAMEA3449257
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.34
Jumbo phage	No

Genome content
Genome length	26,936 bps
GC content	53.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	93.38%
Average CDS length	647.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2162345_1	KOfam	K06131	clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]	NA
UHGV-2162345_1	PHROG	phrog_17878	NA	unknown function
UHGV-2162345_1	UniRef90	UniRef90_UPI001C01ECE1	cardiolipin synthase	NA
UHGV-2162345_1	eggNOG-mapper	411471.SUBVAR_06516	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol	NA
UHGV-2162345_1	PADLOC	DrmC_00030	DrmC	DISARM
UHGV-2162345_1	Pfam	PF13396	Phospholipase_D-nuclease N-terminal	PLDc_N
UHGV-2162345_1	Pfam	PF13091	PLD-like domain	PLDc_2
UHGV-2162345_1	NCBIFam	TIGR04265.1	cardiolipin synthase	NA
UHGV-2162345_1	COG	COG1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	NA
UHGV-2162345_2	KOfam	K17734	aprX; serine protease AprX [EC:3.4.21.-]	NA
UHGV-2162345_2	PHROG	phrog_3677	protease	other
UHGV-2162345_2	UniRef90	UniRef90_UPI001C025AC7	S8 family serine peptidase	NA
UHGV-2162345_2	eggNOG-mapper	693746.OBV_03580	Subtilase family	NA
UHGV-2162345_2	Pfam	PF00082	Subtilase family	Peptidase_S8
UHGV-2162345_2	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-2162345_3	Structural annotation	PF08461, TIGR02719, COG1695	NA	NA
UHGV-2162345_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2162345_4	UniRef90	UniRef90_A0A353BRJ1	Sigma70_r4 domain-containing protein	NA
UHGV-2162345_4	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-2162345_4	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2162345_4	Structural annotation	PF04545, MF_00674, NF005248, COG1595	NA	NA
UHGV-2162345_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2162345_6	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2162345_6	UniRef90	UniRef90_A0A1T4X5Q2	Phage terminase, large subunit, PBSX family	NA
UHGV-2162345_6	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-2162345_6	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2162345_6	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2162345_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2162345_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-2162345_6	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2162345_7	PHROG	phrog_64	portal protein	head and packaging
UHGV-2162345_7	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-2162345_7	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2162345_7	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2162345_7	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2162345_8	PHROG	phrog_8680	NA	unknown function
UHGV-2162345_8	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-2162345_8	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2162345_8	Pfam	PF14386	NA	DUF4417
UHGV-2162345_8	Structural annotation	PF14386	NA	NA
UHGV-2162345_10	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-2162345_10	UniRef90	UniRef90_A0A3A9EHQ6	Phage_Mu_F domain-containing protein	NA
UHGV-2162345_10	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-2162345_10	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2162345_10	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2162345_10	COG	COG2369	NA	NA
UHGV-2162345_10	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2162345_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2162345_11	UniRef90	UniRef90_A0A7X5E1T2	HK97 gp10 family phage protein	NA
UHGV-2162345_11	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-2162345_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2162345_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2162345_11	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2162345_12	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2162345_12	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-2162345_12	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-2162345_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2162345_13	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-2162345_13	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2162345_14	PHROG	phrog_544	major head protein	head and packaging
UHGV-2162345_14	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-2162345_14	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-2162345_14	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2162345_14	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2162345_16	PHROG	phrog_17977	NA	unknown function
UHGV-2162345_16	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-2162345_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2162345_17	Structural annotation	PF11367	NA	NA
UHGV-2162345_18	PHROG	phrog_885	major tail protein	tail
UHGV-2162345_18	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-2162345_18	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-2162345_18	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2162345_19	PHROG	phrog_18646	NA	unknown function
UHGV-2162345_21	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2162345_21	eggNOG-mapper	1437608.BBIA_2554	phage tail tape measure protein	NA
UHGV-2162345_21	COG	COG5412	Phage-related protein	NA
UHGV-2162345_21	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-2162345_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2162345_22	UniRef90	UniRef90_A0A2X2UUQ3	Phage putative tail component	NA
UHGV-2162345_22	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-2162345_22	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2162345_23	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2162345_23	UniRef90	UniRef90_A0A413DNC1	Prophage_tail domain-containing protein	NA
UHGV-2162345_23	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2162345_23	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2162345_23	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2162345_23	COG	COG4926	Phage-related protein	NA
UHGV-2162345_23	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2162345_24	UniRef90	UniRef90_UPI000C79F998	H-type lectin domain-containing protein	NA
UHGV-2162345_24	Structural annotation	PF10651, NF041074	NA	NA
UHGV-2162345_25	PHROG	phrog_24267	NA	unknown function
UHGV-2162345_25	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-2162345_25	eggNOG-mapper	500635.MITSMUL_03163	Membrane	NA
UHGV-2162345_25	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2162345_25	Structural annotation	COG4675	NA	NA
UHGV-2162345_26	KOfam	K07273	acm; lysozyme	NA
UHGV-2162345_26	PHROG	phrog_291	endolysin	lysis
UHGV-2162345_26	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-2162345_26	eggNOG-mapper	1408322.JHYK01000015_gene1912	Glycosyl hydrolase, family 25	NA
UHGV-2162345_26	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2162345_26	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2162345_26	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2162345_26	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-2162345_27	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-2162345_28	PHROG	phrog_1129	holin	lysis
UHGV-2162345_28	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-2162345_28	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2162345_28	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2162345_28	Structural annotation	PF16079	NA	NA
UHGV-2162345_29	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-2162345_29	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-2162345_30	eggNOG-mapper	78345.BMERY_0692	NA	NA
UHGV-2162345_30	Structural annotation	PF07825, NF040990, COG3311	NA	NA
UHGV-2162345_32	PHROG	phrog_3754	NA	unknown function
UHGV-2162345_32	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-2162345_33	PHROG	phrog_21718	NA	unknown function
UHGV-2162345_33	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-2162345_34	PHROG	phrog_22984	NA	unknown function
UHGV-2162345_35	PHROG	phrog_16490	NA	unknown function
UHGV-2162345_35	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-2162345_36	PHROG	phrog_20016	NA	unknown function
UHGV-2162345_36	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2162345_36	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-2162345_37	Structural annotation	PF12510	NA	NA
UHGV-2162345_38	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA