UHGV-2163538

Genome information

Genome length 21,678 bps

CDS count 40

Completeness 54.29% (medium-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-2163538
vOTU ID	vOTU-040081
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029783\|Ga0243236_1001343
BioSample	SAMEA2581951
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.35
Jumbo phage	No

Genome content
Genome length	21,678 bps
GC content	54.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	96.25%
Average CDS length	525.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2163538_1	PHROG	phrog_27197	NA	unknown function
UHGV-2163538_1	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-2163538_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2163538_1	Structural annotation	NF007410	NA	NA
UHGV-2163538_2	Structural annotation	PF21715, MF_01804, TIGR00281, COG1386	NA	NA
UHGV-2163538_5	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2163538_5	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-2163538_5	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-2163538_5	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-2163538_6	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2163538_6	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-2163538_6	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2163538_6	Structural annotation	PF05772	NA	NA
UHGV-2163538_7	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2163538_7	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2163538_7	UniRef90	UniRef90_R5XZW2	HNH domain-containing protein	NA
UHGV-2163538_7	eggNOG-mapper	1123058.KB894266_gene1536	HNH endonuclease	NA
UHGV-2163538_7	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2163538_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2163538_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2163538_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2163538_8	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-2163538_8	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-2163538_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2163538_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2163538_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2163538_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2163538_8	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2163538_10	PHROG	phrog_15768	NA	unknown function
UHGV-2163538_10	UniRef90	UniRef90_A0A810PZI8	NA	NA
UHGV-2163538_10	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-2163538_10	AcrCatalog	cluster_38323	NA	NA
UHGV-2163538_10	Pfam	PF19808	NA	DUF6291
UHGV-2163538_10	Structural annotation	PF19808	NA	NA
UHGV-2163538_11	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2163538_11	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2163538_11	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-2163538_11	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2163538_11	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2163538_11	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2163538_11	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-2163538_12	PHROG	phrog_15198	NA	unknown function
UHGV-2163538_12	UniRef90	UniRef90_A0A373NR41	NA	NA
UHGV-2163538_12	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-2163538_12	Pfam	PF04448	NA	DUF551
UHGV-2163538_13	PHROG	phrog_38832	NA	unknown function
UHGV-2163538_13	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-2163538_13	Structural annotation	PF07073	NA	NA
UHGV-2163538_15	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-2163538_18	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2163538_18	UniRef90	UniRef90_UPI0005288167	NA	NA
UHGV-2163538_18	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-2163538_18	Pfam	PF06356	NA	DUF1064
UHGV-2163538_18	Structural annotation	PF06356	NA	NA
UHGV-2163538_21	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2163538_22	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-2163538_23	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2163538_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2163538_23	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-2163538_23	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-2163538_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2163538_23	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2163538_23	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2163538_24	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2163538_24	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-2163538_24	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-2163538_24	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2163538_24	Structural annotation	PF16677	NA	NA
UHGV-2163538_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2163538_25	PHROG	phrog_10250	NA	unknown function
UHGV-2163538_25	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-2163538_25	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-2163538_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2163538_25	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2163538_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2163538_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2163538_25	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2163538_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-2163538_26	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-2163538_26	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-2163538_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2163538_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2163538_27	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-2163538_27	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-2163538_27	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-2163538_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2163538_27	COG	COG2369	NA	NA
UHGV-2163538_27	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2163538_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2163538_28	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-2163538_28	eggNOG-mapper	386415.NT01CX_2170	NA	NA
UHGV-2163538_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2163538_28	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2163538_29	UniRef90	UniRef90_B6CXE3	Fibronectin autolysin	NA
UHGV-2163538_29	Structural annotation	PF06810	NA	NA
UHGV-2163538_30	PHROG	phrog_267	major head protein	head and packaging
UHGV-2163538_30	UniRef90	UniRef90_A0A417IN35	P22 coat protein-protein 5 domain protein	NA
UHGV-2163538_30	eggNOG-mapper	1504823.CCMM01000008_gene1041	P22 coat protein-protein 5 domain protein	NA
UHGV-2163538_30	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-2163538_30	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2163538_32	PHROG	phrog_17977	NA	unknown function
UHGV-2163538_32	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-2163538_32	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2163538_33	eggNOG-mapper	645991.Sgly_0337	NA	NA
UHGV-2163538_34	PHROG	phrog_17405	head protein	head and packaging
UHGV-2163538_34	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-2163538_34	Structural annotation	PF11367	NA	NA
UHGV-2163538_35	PHROG	phrog_885	major tail protein	tail
UHGV-2163538_35	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-2163538_35	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-2163538_35	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2163538_36	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-2163538_38	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2163538_38	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-2163538_38	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-2163538_38	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2163538_38	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2163538_39	PHROG	phrog_1194	NA	unknown function
UHGV-2163538_39	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2163538_40	PHROG	phrog_32744	NA	unknown function
UHGV-2163538_40	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-2163538_40	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA