UHGV-2164135

Genome information

Genome length 39,374 bps

CDS count 51

Completeness 99.90% (high-quality)

geNomad score 0.9630

Prediction confidence Confident

Genome information
Genome ID	UHGV-2164135
vOTU ID	vOTU-059693
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029842\|Ga0245273_100017\|provirus_250761_290134
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9630
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.43
Jumbo phage	No

Genome content
Genome length	39,374 bps
GC content	49.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.69%
Average CDS length	703.24 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2164135_1	KOfam	K07979	ytrA; GntR family transcriptional regulator	NA
UHGV-2164135_1	PHROG	phrog_9285	NA	unknown function
UHGV-2164135_1	UniRef90	UniRef90_R6HY08	Transcriptional regulator GntR family	NA
UHGV-2164135_1	eggNOG-mapper	555088.DealDRAFT_0803	PFAM regulatory protein GntR HTH	NA
UHGV-2164135_1	Pfam	PF00392	Bacterial regulatory proteins, gntR family	GntR
UHGV-2164135_1	COG	COG1725	DNA-binding transcriptional regulator YhcF, GntR family	NA
UHGV-2164135_2	KOfam	K14059	int; integrase	NA
UHGV-2164135_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2164135_2	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-2164135_2	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-2164135_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2164135_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2164135_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2164135_4	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-2164135_4	UniRef90	UniRef90_UPI0009E36456	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-2164135_4	eggNOG-mapper	1392502.JNIO01000008_gene1606	protein encoded in hypervariable junctions of pilus gene clusters	NA
UHGV-2164135_4	Pfam	PF05534	HicB family	HicB
UHGV-2164135_4	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-2164135_4	Structural annotation	PF21748, PF07878, NF041264, COG4226	NA	NA
UHGV-2164135_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2164135_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2164135_5	UniRef90	UniRef90_R6MAH2	LexA repressor	NA
UHGV-2164135_5	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2164135_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2164135_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2164135_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2164135_5	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2164135_6	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-2164135_6	UniRef90	UniRef90_UPI0013E96CDD	helix-turn-helix transcriptional regulator	NA
UHGV-2164135_6	eggNOG-mapper	1033737.CAEV01000029_gene313	Helix-turn-helix	NA
UHGV-2164135_6	Pfam	PF05339	NA	DUF739
UHGV-2164135_6	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2164135_8	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2164135_8	PHROG	phrog_18750	NA	unknown function
UHGV-2164135_8	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-2164135_8	eggNOG-mapper	445972.ANACOL_03333	Cell wall hydrolase	NA
UHGV-2164135_8	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-2164135_8	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-2164135_8	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-2164135_12	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2164135_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2164135_12	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-2164135_12	eggNOG-mapper	457412.RSAG_04663	sequence-specific DNA binding	NA
UHGV-2164135_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2164135_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2164135_12	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2164135_13	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2164135_13	PHROG	phrog_1499	NA	unknown function
UHGV-2164135_13	UniRef90	UniRef90_R6IXY5	AAA_15 domain-containing protein	NA
UHGV-2164135_13	eggNOG-mapper	478749.BRYFOR_07583	domain protein	NA
UHGV-2164135_13	PADLOC	AAA_15	NA	NA
UHGV-2164135_13	Pfam	PF13476	AAA domain	AAA_23
UHGV-2164135_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2164135_13	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2164135_14	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2164135_14	UniRef90	UniRef90_UPI001411FE86	ATP-binding protein	NA
UHGV-2164135_14	eggNOG-mapper	394503.Ccel_3309	AAA domain	NA
UHGV-2164135_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-2164135_14	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2164135_15	PHROG	phrog_2698	NA	unknown function
UHGV-2164135_15	UniRef90	UniRef90_A0A417IL23	NA	NA
UHGV-2164135_15	eggNOG-mapper	1123511.KB905868_gene200	NA	NA
UHGV-2164135_15	Structural annotation	PF05037	NA	NA
UHGV-2164135_16	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2164135_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2164135_16	UniRef90	UniRef90_R6I0L6	Type III restriction protein res subunit	NA
UHGV-2164135_16	eggNOG-mapper	610130.Closa_1369	DEAD-like helicases superfamily	NA
UHGV-2164135_16	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2164135_16	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2164135_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2164135_16	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2164135_16	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2164135_17	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2164135_17	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2164135_17	UniRef90	UniRef90_A0A1C6CSE0	Regulatory protein repA	NA
UHGV-2164135_17	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-2164135_17	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2164135_17	Pfam	PF13481	AAA domain	AAA_25
UHGV-2164135_17	COG	COG3598	RecA-family ATPase	NA
UHGV-2164135_17	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2164135_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2164135_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2164135_18	UniRef90	UniRef90_R6HY68	Endodeoxyribonuclease RusA	NA
UHGV-2164135_18	eggNOG-mapper	394503.Ccel_3302	endodeoxyribonuclease RusA	NA
UHGV-2164135_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2164135_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2164135_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2164135_19	Structural annotation	NF001606	NA	NA
UHGV-2164135_20	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2164135_20	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2164135_20	UniRef90	UniRef90_A0A3D1I1E6	ParB domain-containing protein	NA
UHGV-2164135_20	eggNOG-mapper	445972.ANACOL_00162	ParB-like nuclease domain	NA
UHGV-2164135_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2164135_20	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-2164135_20	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-2164135_20	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-2164135_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2164135_21	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-2164135_21	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-2164135_21	Structural annotation	PF04545	NA	NA
UHGV-2164135_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2164135_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2164135_23	UniRef90	UniRef90_D4CPK6	Terminase small subunit	NA
UHGV-2164135_23	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-2164135_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2164135_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2164135_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2164135_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2164135_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2164135_24	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-2164135_24	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-2164135_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2164135_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2164135_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2164135_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-2164135_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2164135_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-2164135_25	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-2164135_25	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2164135_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2164135_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2164135_26	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2164135_26	UniRef90	UniRef90_A0A3D2QEP6	Phage_Mu_F domain-containing protein	NA
UHGV-2164135_26	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-2164135_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2164135_26	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-2164135_26	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2164135_26	COG	COG2369	NA	NA
UHGV-2164135_26	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2164135_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2164135_28	UniRef90	UniRef90_A0A410Q086	Phage scaffold protein	NA
UHGV-2164135_28	eggNOG-mapper	1196028.ALEF01000043_gene465	Phage minor structural protein GP20	NA
UHGV-2164135_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2164135_29	PHROG	phrog_283	major head protein	head and packaging
UHGV-2164135_29	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-2164135_29	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-2164135_29	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-2164135_29	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2164135_30	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2164135_30	UniRef90	UniRef90_R6I6I7	NA	NA
UHGV-2164135_30	eggNOG-mapper	268407.PWYN_03015	NA	NA
UHGV-2164135_31	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2164135_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2164135_32	UniRef90	UniRef90_R6IVT6	Bacteriophage protein PF04883 family	NA
UHGV-2164135_32	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2164135_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2164135_32	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2164135_32	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2164135_33	Structural annotation	PF05657	NA	NA
UHGV-2164135_34	PHROG	phrog_158	major tail protein	tail
UHGV-2164135_34	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-2164135_34	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-2164135_34	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-2164135_34	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2164135_35	UniRef90	UniRef90_UPI0012BCDD8A	NA	NA
UHGV-2164135_35	eggNOG-mapper	1211844.CBLM010000016_gene1484	NA	NA
UHGV-2164135_35	Structural annotation	PF19591	NA	NA
UHGV-2164135_36	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2164135_36	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-2164135_36	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2164135_37	PHROG	phrog_26910	NA	unknown function
UHGV-2164135_37	eggNOG-mapper	1117958.PE143B_0109845	NA	NA
UHGV-2164135_38	PHROG	phrog_1194	NA	unknown function
UHGV-2164135_38	UniRef90	UniRef90_A0A0R1Q5P9	NA	NA
UHGV-2164135_38	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-2164135_38	Pfam	PF20458	NA	DUF6711
UHGV-2164135_38	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2164135_39	PHROG	phrog_6616	tail protein	tail
UHGV-2164135_39	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-2164135_39	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-2164135_39	COG	COG4926	Phage-related protein	NA
UHGV-2164135_39	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2164135_42	Structural annotation	PF02973	NA	NA
UHGV-2164135_44	PHROG	phrog_27545	NA	unknown function
UHGV-2164135_44	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-2164135_44	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-2164135_44	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2164135_45	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2164135_45	PHROG	phrog_435	endolysin	lysis
UHGV-2164135_45	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-2164135_45	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-2164135_45	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2164135_45	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2164135_45	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-2164135_46	PHROG	phrog_9428	NA	unknown function
UHGV-2164135_46	UniRef90	UniRef90_A0A7X5DY06	Serine/threonine protein kinase	NA
UHGV-2164135_46	eggNOG-mapper	1226322.HMPREF1545_03573	NA	NA
UHGV-2164135_47	PHROG	phrog_263	holin	lysis
UHGV-2164135_47	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-2164135_47	eggNOG-mapper	315750.BPUM_3085	SPP1 phage holin	NA
UHGV-2164135_47	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2164135_47	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2164135_47	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-2164135_49	KOfam	K03778	ldhA; D-lactate dehydrogenase [EC:1.1.1.28]	NA
UHGV-2164135_49	PHROG	phrog_26092	NA	unknown function
UHGV-2164135_49	UniRef90	UniRef90_R6I8H0	4-phosphoerythronate dehydrogenase	NA
UHGV-2164135_49	eggNOG-mapper	411463.EUBVEN_01915	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family	NA
UHGV-2164135_49	Pfam	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	2-Hacid_dh_C
UHGV-2164135_49	COG	COG1052	Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase	NA