UHGV-2164878

Genome information

Genome length 30,126 bps

CDS count 41

Completeness 86.11% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-2164878
vOTU ID	vOTU-042155
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029872\|Ga0245317_100869\|provirus_5683_35808
BioSample	SAMEA3449367
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.29
Jumbo phage	No

Genome content
Genome length	30,126 bps
GC content	60.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	93.07%
Average CDS length	688.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2164878_1	PHROG	phrog_13256	NA	unknown function
UHGV-2164878_1	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-2164878_2	PHROG	phrog_1863	NA	unknown function
UHGV-2164878_2	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-2164878_3	KOfam	K07273	acm; lysozyme	NA
UHGV-2164878_3	PHROG	phrog_291	endolysin	lysis
UHGV-2164878_3	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-2164878_3	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-2164878_3	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2164878_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2164878_3	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2164878_3	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-2164878_4	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-2164878_4	UniRef90	UniRef90_UPI0019223612	phage tail assembly chaperone	NA
UHGV-2164878_4	eggNOG-mapper	666685.R2APBS1_2865	Phage tail assembly chaperone protein	NA
UHGV-2164878_4	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-2164878_4	Structural annotation	PF16778	NA	NA
UHGV-2164878_5	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-2164878_5	PHROG	phrog_5302	tail protein	tail
UHGV-2164878_5	UniRef90	UniRef90_UPI00156EC4BD	phage tail protein	NA
UHGV-2164878_5	eggNOG-mapper	411470.RUMGNA_00248	Phage tail-collar fibre protein	NA
UHGV-2164878_5	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2164878_6	PHROG	phrog_9534	head protein	head and packaging
UHGV-2164878_6	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-2164878_6	Structural annotation	PF21567	NA	NA
UHGV-2164878_7	PHROG	phrog_538	minor tail protein	tail
UHGV-2164878_7	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2164878_7	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-2164878_7	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2164878_8	PHROG	phrog_36410	NA	unknown function
UHGV-2164878_8	UniRef90	UniRef90_UPI000C7AD134	phage tail family protein	NA
UHGV-2164878_8	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-2164878_8	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2164878_9	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-2164878_9	UniRef90	UniRef90_A0A1Q6T3H1	Phage tail tape measure protein	NA
UHGV-2164878_9	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-2164878_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2164878_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2164878_9	COG	COG5283	Phage-related tail protein	NA
UHGV-2164878_9	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-2164878_10	PHROG	phrog_1633	NA	unknown function
UHGV-2164878_10	UniRef90	UniRef90_UPI0015CCAF51	NA	NA
UHGV-2164878_10	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-2164878_10	Pfam	PF17318	NA	DUF5361
UHGV-2164878_10	Structural annotation	PF17318	NA	NA
UHGV-2164878_11	PHROG	phrog_1526	NA	unknown function
UHGV-2164878_11	UniRef90	UniRef90_A0A0E4H642	NA	NA
UHGV-2164878_11	eggNOG-mapper	1321820.HMPREF1983_00926	NA	NA
UHGV-2164878_12	PHROG	phrog_117	major tail protein	tail
UHGV-2164878_12	UniRef90	UniRef90_A0A1Q6T308	Phage tail protein	NA
UHGV-2164878_12	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-2164878_12	COG	COG5492	NA	NA
UHGV-2164878_12	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2164878_13	PHROG	phrog_123	tail terminator	connector
UHGV-2164878_13	UniRef90	UniRef90_R6D1D5	NA	NA
UHGV-2164878_13	eggNOG-mapper	1123263.AUKY01000068_gene495	NA	NA
UHGV-2164878_13	Structural annotation	PF06141	NA	NA
UHGV-2164878_14	PHROG	phrog_387	neck protein	connector
UHGV-2164878_14	UniRef90	UniRef90_Q7Y4I0	Gp44	NA
UHGV-2164878_14	eggNOG-mapper	768726.HMPREF9178_1059	NA	NA
UHGV-2164878_15	PHROG	phrog_501	head closure Hc1	connector
UHGV-2164878_15	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-2164878_15	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2164878_16	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2164878_16	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2164878_16	Pfam	PF09355	NA	Phage_Gp19
UHGV-2164878_16	Structural annotation	PF09355	NA	NA
UHGV-2164878_17	PHROG	phrog_267	major head protein	head and packaging
UHGV-2164878_17	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-2164878_17	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-2164878_17	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2164878_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2164878_18	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-2164878_18	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-2164878_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2164878_18	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2164878_19	PHROG	phrog_3675	NA	unknown function
UHGV-2164878_19	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-2164878_19	eggNOG-mapper	1120978.KB894082_gene1061	YjcQ protein	NA
UHGV-2164878_19	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-2164878_19	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-2164878_20	Structural annotation	PF06442, MF_01194, NF000331, COG5475	NA	NA
UHGV-2164878_21	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-2164878_21	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-2164878_21	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-2164878_21	Pfam	PF21814	NA	DUF6883
UHGV-2164878_21	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-2164878_21	Structural annotation	PF11429	NA	NA
UHGV-2164878_22	PHROG	phrog_104	portal protein	head and packaging
UHGV-2164878_22	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-2164878_22	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2164878_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2164878_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2164878_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2164878_23	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-2164878_23	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-2164878_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2164878_23	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-2164878_24	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-2164878_24	Structural annotation	PF19962	NA	NA
UHGV-2164878_25	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2164878_25	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-2164878_25	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-2164878_26	PHROG	phrog_5763	NA	unknown function
UHGV-2164878_26	eggNOG-mapper	1235800.C819_02269	NA	NA
UHGV-2164878_27	PHROG	phrog_1281	NA	unknown function
UHGV-2164878_27	UniRef90	UniRef90_A0A2V2GNZ1	NA	NA
UHGV-2164878_27	eggNOG-mapper	1035193.HMPREF9073_01980	NA	NA
UHGV-2164878_27	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-2164878_27	COG	COG3600	NA	NA
UHGV-2164878_27	Structural annotation	PF13274, COG3600	NA	NA
UHGV-2164878_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2164878_28	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-2164878_28	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-2164878_28	Structural annotation	PF04545, NF033634	NA	NA
UHGV-2164878_29	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2164878_29	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2164878_29	UniRef90	UniRef90_A0A1Q6T350	ParB domain-containing protein	NA
UHGV-2164878_29	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-2164878_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2164878_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2164878_29	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2164878_30	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2164878_30	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2164878_30	UniRef90	UniRef90_A0A6N8H6J9	ParA family protein	NA
UHGV-2164878_30	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-2164878_30	Pfam	PF13614	AAA domain	AAA_31
UHGV-2164878_30	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2164878_30	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2164878_31	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2164878_31	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2164878_31	UniRef90	UniRef90_A0A1Q6T363	DNA helicase	NA
UHGV-2164878_31	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-2164878_31	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2164878_31	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2164878_31	COG	COG0305	Replicative DNA helicase	NA
UHGV-2164878_31	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2164878_32	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2164878_32	UniRef90	UniRef90_A0A6N8H2D2	Helix-turn-helix domain-containing protein	NA
UHGV-2164878_32	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-2164878_32	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2164878_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2164878_32	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-2164878_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2164878_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2164878_33	UniRef90	UniRef90_A0A1Q6T3F1	Single-stranded DNA-binding protein	NA
UHGV-2164878_33	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-2164878_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2164878_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2164878_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2164878_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2164878_33	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2164878_34	PHROG	phrog_1029	NA	unknown function
UHGV-2164878_34	UniRef90	UniRef90_A0A0P0N9M8	Phage-related protein	NA
UHGV-2164878_34	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-2164878_34	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2164878_35	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2164878_35	UniRef90	UniRef90_A0A429ZWU1	Replication terminator protein	NA
UHGV-2164878_35	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-2164878_37	PHROG	phrog_7566	NA	unknown function
UHGV-2164878_37	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-2164878_38	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-2164878_38	Structural annotation	PF04606, NF007241	NA	NA
UHGV-2164878_39	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2164878_39	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-2164878_39	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2164878_40	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-2164878_40	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-2164878_41	PHROG	phrog_10280	NA	unknown function
UHGV-2164878_41	eggNOG-mapper	1211640.K4JWC4_9CAUD	NA	NA