UHGV-2165041

Genome information

Genome length 38,719 bps

CDS count 45

Completeness 97.37% (high-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-2165041
vOTU ID	vOTU-008027
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029786\|Ga0243817_1000055\|provirus_115155_158482
BioSample	SAMN05971524
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.37% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.88
Jumbo phage	No

Genome content
Genome length	38,719 bps
GC content	39.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	95.73%
Average CDS length	825.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2165041_1	KOfam	K14059	int; integrase	NA
UHGV-2165041_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2165041_1	UniRef90	UniRef90_UPI00093149AF	site-specific integrase	NA
UHGV-2165041_1	eggNOG-mapper	585394.RHOM_14030	Belongs to the 'phage' integrase family	NA
UHGV-2165041_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2165041_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2165041_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2165041_2	eggNOG-mapper	1163671.JAGI01000002_gene1685	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-2165041_2	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-2165041_2	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-2165041_3	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2165041_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2165041_3	UniRef90	UniRef90_A0A1Q6KGJ8	Transcriptional regulator	NA
UHGV-2165041_3	eggNOG-mapper	411470.RUMGNA_00189	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2165041_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2165041_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2165041_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2165041_5	UniRef90	UniRef90_A0A1Q6KH79	Transcriptional regulator	NA
UHGV-2165041_5	eggNOG-mapper	1235793.C809_03587	Helix-turn-helix XRE-family like proteins	NA
UHGV-2165041_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2165041_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2165041_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2165041_6	eggNOG-mapper	411468.CLOSCI_00322	NA	NA
UHGV-2165041_7	PHROG	phrog_6058	NA	unknown function
UHGV-2165041_7	UniRef90	UniRef90_A0A0V8QBN7	Histone-lysine N-methyltransferase	NA
UHGV-2165041_7	eggNOG-mapper	428125.CLOLEP_01347	NA	NA
UHGV-2165041_7	Structural annotation	PF12728, NF040990	NA	NA
UHGV-2165041_8	Structural annotation	PF07408, MF_01560, TIGR00029, COG0268	NA	NA
UHGV-2165041_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2165041_11	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-2165041_11	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2165041_12	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2165041_12	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2165041_12	UniRef90	UniRef90_A0A1Q6KIM6	RNase H type-1 domain-containing protein	NA
UHGV-2165041_12	eggNOG-mapper	1120963.KB894491_gene1009	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2165041_12	Pfam	PF00075	RNase H	RNase_H
UHGV-2165041_12	COG	COG0328	Ribonuclease HI	NA
UHGV-2165041_12	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2165041_13	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-2165041_14	PHROG	phrog_4433	NA	unknown function
UHGV-2165041_14	eggNOG-mapper	742738.HMPREF9460_01792	regulation of DNA-templated transcription, elongation	NA
UHGV-2165041_14	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-2165041_14	Structural annotation	PF12120, NF000318	NA	NA
UHGV-2165041_15	PHROG	phrog_8470	NA	unknown function
UHGV-2165041_15	UniRef90	UniRef90_UPI000E4BB21C	PcfJ domain-containing protein	NA
UHGV-2165041_15	eggNOG-mapper	742733.HMPREF9469_00219	PcfJ-like protein	NA
UHGV-2165041_15	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2165041_15	Structural annotation	PF14284	NA	NA
UHGV-2165041_16	PHROG	phrog_15077	NA	unknown function
UHGV-2165041_16	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-2165041_16	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-2165041_16	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2165041_17	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-2165041_17	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-2165041_20	PHROG	phrog_625	NA	unknown function
UHGV-2165041_20	UniRef90	UniRef90_UPI0015F9766F	ASCH domain-containing protein	NA
UHGV-2165041_20	eggNOG-mapper	411463.EUBVEN_00477	NA	NA
UHGV-2165041_22	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-2165041_22	UniRef90	UniRef90_A0A6L6XJP0	Radical SAM protein	NA
UHGV-2165041_22	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-2165041_22	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-2165041_22	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-2165041_24	eggNOG-mapper	610130.Closa_1375	NA	NA
UHGV-2165041_26	UniRef90	UniRef90_A0A6L9HMX6	NA	NA
UHGV-2165041_26	eggNOG-mapper	585394.RHOM_04340	NA	NA
UHGV-2165041_26	Pfam	PF14199	NA	DUF4317
UHGV-2165041_26	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-2165041_27	PHROG	phrog_24386	NA	unknown function
UHGV-2165041_27	eggNOG-mapper	742740.HMPREF9474_02291	phosphatase activity	NA
UHGV-2165041_27	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-2165041_27	Structural annotation	TIGR01689	NA	NA
UHGV-2165041_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2165041_29	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2165041_29	UniRef90	UniRef90_A0A4P9C628	Phage portal protein	NA
UHGV-2165041_29	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2165041_29	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2165041_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2165041_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-2165041_29	Structural annotation	PF03592, PF06056, NF040601, COG3728	NA	NA
UHGV-2165041_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2165041_30	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2165041_30	UniRef90	UniRef90_A0A2V2D4K5	Terminase-like family protein	NA
UHGV-2165041_30	eggNOG-mapper	411483.FAEPRAA2165_01044	Terminase-like family	NA
UHGV-2165041_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2165041_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2165041_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2165041_31	PHROG	phrog_156	portal protein	head and packaging
UHGV-2165041_31	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-2165041_31	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-2165041_31	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2165041_32	KOfam	K07584	NA	NA
UHGV-2165041_32	PHROG	phrog_4478	peptidase	other
UHGV-2165041_32	UniRef90	UniRef90_A0A7X8QR99	Ribosomal-processing cysteine protease Prp	NA
UHGV-2165041_32	eggNOG-mapper	1280671.AUJH01000002_gene1860	Cysteine protease Prp	NA
UHGV-2165041_32	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2165041_32	COG	COG2868	NA	NA
UHGV-2165041_32	Structural annotation	NF011130, COG2868	NA	NA
UHGV-2165041_33	PHROG	phrog_13908	NA	unknown function
UHGV-2165041_33	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-2165041_34	PHROG	phrog_1357	major head protein	head and packaging
UHGV-2165041_34	UniRef90	UniRef90_A0A3R6PQZ4	N4-gp56 family major capsid protein	NA
UHGV-2165041_34	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-2165041_34	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2165041_34	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2165041_35	PHROG	phrog_15239	NA	unknown function
UHGV-2165041_36	PHROG	phrog_12105	NA	unknown function
UHGV-2165041_36	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-2165041_37	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-2165041_37	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-2165041_37	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-2165041_39	PHROG	phrog_21397	NA	unknown function
UHGV-2165041_39	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-2165041_40	PHROG	phrog_22978	NA	unknown function
UHGV-2165041_40	UniRef90	UniRef90_A0A396KH15	PBECR3 domain-containing protein	NA
UHGV-2165041_40	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-2165041_40	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-2165041_41	PHROG	phrog_31398	NA	unknown function
UHGV-2165041_41	UniRef90	UniRef90_A0A1I0BH39	BppU_N domain-containing protein	NA
UHGV-2165041_41	eggNOG-mapper	397288.C806_02170	NA	NA
UHGV-2165041_41	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2165041_41	Structural annotation	PF10651	NA	NA
UHGV-2165041_43	PHROG	phrog_1863	NA	unknown function
UHGV-2165041_43	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-2165041_44	PHROG	phrog_443	holin	lysis
UHGV-2165041_44	UniRef90	UniRef90_UPI001BA9F6DF	holin	NA
UHGV-2165041_44	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-2165041_44	Structural annotation	PF16945	NA	NA
UHGV-2165041_45	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2165041_45	PHROG	phrog_435	endolysin	lysis
UHGV-2165041_45	UniRef90	UniRef90_A0A1Q6KI91	SPOR domain-containing protein	NA
UHGV-2165041_45	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-2165041_45	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2165041_45	Pfam	PF05036	SPOR domain	SPOR
UHGV-2165041_45	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2165041_45	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA