UHGV-2165069

Genome information

Genome length 32,924 bps

CDS count 47

Completeness 65.31% (medium-quality)

geNomad score 0.9562

Prediction confidence Confident

Genome information
Genome ID	UHGV-2165069
vOTU ID	vOTU-015721
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029794\|Ga0243854_1000019\|provirus_141617_183236
BioSample	SAMN05971565
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	65.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9562
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.41
Jumbo phage	No

Genome content
Genome length	32,924 bps
GC content	54.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	94.32%
Average CDS length	667.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2165069_1	UniRef90	UniRef90_A0A3D3Y2G1	NA	NA
UHGV-2165069_1	eggNOG-mapper	411474.COPEUT_01847	Conserved repeat protein	NA
UHGV-2165069_1	Pfam	PF01345	NA	DUF11
UHGV-2165069_1	NCBIFam	TIGR01451.2	NA	NA
UHGV-2165069_1	COG	COG1361	S-layer protein MJ0795, predicted component of type IV pili-like system	NA
UHGV-2165069_3	KOfam	K00067	rfbD, rmlD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]	NA
UHGV-2165069_3	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-2165069_3	UniRef90	UniRef90_A0A3D3Y331	dTDP-4-dehydrorhamnose reductase	NA
UHGV-2165069_3	eggNOG-mapper	1280666.ATVS01000035_gene1896	RmlD substrate binding domain	NA
UHGV-2165069_3	Pfam	PF04321	RmlD substrate binding domain	RmlD_sub_bind
UHGV-2165069_3	COG	COG1091	dTDP-4-dehydrorhamnose reductase	NA
UHGV-2165069_4	KOfam	K13059	nahK, lnpB; N-acetylhexosamine 1-kinase [EC:2.7.1.162]	NA
UHGV-2165069_4	UniRef90	UniRef90_A0A3D3Y4R7	Mucin desulfatase	NA
UHGV-2165069_4	eggNOG-mapper	552398.HMPREF0866_02116	Phosphotransferase enzyme family	NA
UHGV-2165069_4	Pfam	PF01636	Phosphotransferase enzyme family	APH
UHGV-2165069_4	COG	COG2334	Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist	NA
UHGV-2165069_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2165069_5	PHROG	phrog_3088	amidase	lysis
UHGV-2165069_5	UniRef90	UniRef90_A0A3D3Y0W1	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2165069_5	eggNOG-mapper	1232446.BAIE02000094_gene1162	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-2165069_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2165069_5	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2165069_5	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-2165069_6	PHROG	phrog_199	holin	lysis
UHGV-2165069_6	UniRef90	UniRef90_UPI001F18BC7F	phage holin family protein	NA
UHGV-2165069_6	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-2165069_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2165069_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2165069_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2165069_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2165069_7	PHROG	phrog_372	tail protein	tail
UHGV-2165069_7	UniRef90	UniRef90_UPI001F1AF627	NA	NA
UHGV-2165069_7	eggNOG-mapper	1235799.C818_01005	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-2165069_7	Pfam	PF05895	NA	DUF859
UHGV-2165069_7	COG	COG4675	Phage tail collar domain	NA
UHGV-2165069_8	eggNOG-mapper	1235799.C818_01006	Prophage endopeptidase tail	NA
UHGV-2165069_8	COG	COG4926	Phage-related protein	NA
UHGV-2165069_9	PHROG	phrog_38044	NA	unknown function
UHGV-2165069_9	UniRef90	UniRef90_A0A2V1JQ53	Ig-like domain-containing protein	NA
UHGV-2165069_9	eggNOG-mapper	1410624.JNKK01000045_gene547	NA	NA
UHGV-2165069_9	Structural annotation	PF14874, NF038186	NA	NA
UHGV-2165069_10	eggNOG-mapper	1392487.JIAD01000001_gene510	NA	NA
UHGV-2165069_11	PHROG	phrog_3558	tail protein	tail
UHGV-2165069_11	UniRef90	UniRef90_UPI001F38EC3D	phage tail protein	NA
UHGV-2165069_11	eggNOG-mapper	877414.ATWA01000019_gene2050	Phage minor structural protein	NA
UHGV-2165069_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2165069_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2165069_11	COG	COG4926	Phage-related protein	NA
UHGV-2165069_11	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2165069_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2165069_12	UniRef90	UniRef90_UPI00164D63C1	phage tail family protein	NA
UHGV-2165069_12	eggNOG-mapper	1235799.C818_04232	phage tail	NA
UHGV-2165069_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-2165069_12	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-2165069_13	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2165069_13	eggNOG-mapper	521003.COLINT_02352	nuclear chromosome segregation	NA
UHGV-2165069_13	COG	COG5412	Phage-related protein	NA
UHGV-2165069_13	Structural annotation	PF20155, COG5281	NA	NA
UHGV-2165069_14	PHROG	phrog_1633	NA	unknown function
UHGV-2165069_14	UniRef90	UniRef90_UPI0007F385C4	NA	NA
UHGV-2165069_14	eggNOG-mapper	1121864.OMO_02160	NA	NA
UHGV-2165069_14	Pfam	PF17318	NA	DUF5361
UHGV-2165069_14	Structural annotation	PF17318	NA	NA
UHGV-2165069_15	PHROG	phrog_1526	NA	unknown function
UHGV-2165069_15	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-2165069_16	PHROG	phrog_117	major tail protein	tail
UHGV-2165069_16	UniRef90	UniRef90_A0A844E2C0	Phage tail protein	NA
UHGV-2165069_16	eggNOG-mapper	875454.BAEW01000017_gene1590	domain, Protein	NA
UHGV-2165069_16	COG	COG5492	NA	NA
UHGV-2165069_16	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2165069_17	PHROG	phrog_123	tail terminator	connector
UHGV-2165069_17	eggNOG-mapper	1231377.C426_1732	NA	NA
UHGV-2165069_17	Structural annotation	PF06141	NA	NA
UHGV-2165069_18	PHROG	phrog_387	neck protein	connector
UHGV-2165069_18	UniRef90	UniRef90_A0A0E9GXC0	NA	NA
UHGV-2165069_18	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-2165069_19	PHROG	phrog_501	head closure Hc1	connector
UHGV-2165069_19	UniRef90	UniRef90_R6CEU4	NA	NA
UHGV-2165069_19	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-2165069_19	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2165069_20	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2165069_20	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2165069_20	eggNOG-mapper	566552.BIFCAT_00869	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2165069_20	Structural annotation	PF09355	NA	NA
UHGV-2165069_21	PHROG	phrog_267	major head protein	head and packaging
UHGV-2165069_21	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-2165069_21	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-2165069_21	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2165069_22	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-2165069_22	UniRef90	UniRef90_A0A3E4GMR3	NA	NA
UHGV-2165069_22	eggNOG-mapper	1123263.AUKY01000068_gene501	NA	NA
UHGV-2165069_22	Structural annotation	PF14265	NA	NA
UHGV-2165069_23	Structural annotation	PF21279, NF040942	NA	NA
UHGV-2165069_24	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-2165069_24	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-2165069_24	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-2165069_24	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-2165069_25	PHROG	phrog_104	portal protein	head and packaging
UHGV-2165069_25	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-2165069_25	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2165069_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2165069_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2165069_26	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-2165069_26	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-2165069_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2165069_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2165069_26	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-2165069_27	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-2165069_27	Structural annotation	PF19962	NA	NA
UHGV-2165069_29	PHROG	phrog_29177	NA	unknown function
UHGV-2165069_29	UniRef90	UniRef90_UPI001AE4C5CF	TIR domain-containing protein	NA
UHGV-2165069_29	Pfam	PF13676	TIR domain	TIR_2
UHGV-2165069_30	PHROG	phrog_13999	NA	unknown function
UHGV-2165069_31	UniRef90	UniRef90_A0A3A9EZN6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2165069_31	eggNOG-mapper	411902.CLOBOL_05672	NA	NA
UHGV-2165069_31	Structural annotation	PF07374	NA	NA
UHGV-2165069_33	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-2165069_35	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2165069_35	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2165069_35	UniRef90	UniRef90_UPI000A26EB57	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2165069_35	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-2165069_35	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2165069_35	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2165069_35	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2165069_36	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2165069_36	UniRef90	UniRef90_UPI00067E73A4	NA	NA
UHGV-2165069_36	eggNOG-mapper	1507.HMPREF0262_00435	NA	NA
UHGV-2165069_36	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2165069_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2165069_36	Structural annotation	PF14297	NA	NA
UHGV-2165069_37	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2165069_37	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2165069_37	UniRef90	UniRef90_UPI00190EB189	MBL fold metallo-hydrolase	NA
UHGV-2165069_37	eggNOG-mapper	1444309.JAQG01000013_gene1930	Metallo-beta-lactamase superfamily	NA
UHGV-2165069_37	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2165069_37	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2165069_37	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-2165069_38	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2165069_38	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2165069_38	UniRef90	UniRef90_R6QSG7	Recombinational DNA repair protein RecT (Prophage associated)	NA
UHGV-2165069_38	eggNOG-mapper	1111134.HMPREF1253_0395	RecT family	NA
UHGV-2165069_38	Pfam	PF03837	RecT family	RecT
UHGV-2165069_38	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2165069_38	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2165069_38	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2165069_40	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2165069_40	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2165069_40	UniRef90	UniRef90_A0A7G9WF72	AAA family ATPase	NA
UHGV-2165069_40	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-2165069_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2165069_40	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2165069_43	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2165069_43	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2165069_45	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2165069_45	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2165069_45	UniRef90	UniRef90_A7VTD9	DNA-binding helix-turn-helix protein	NA
UHGV-2165069_45	eggNOG-mapper	428125.CLOLEP_01831	sequence-specific DNA binding	NA
UHGV-2165069_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2165069_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2165069_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2165069_46	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2165069_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2165069_46	UniRef90	UniRef90_A7VTE0	LexA family transcriptional regulator	NA
UHGV-2165069_46	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-2165069_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2165069_46	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2165069_46	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2165069_46	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA