UHGV-2165149

Genome information

Genome length 42,535 bps

CDS count 59

Completeness 93.84% (high-quality)

geNomad score 0.9586

Prediction confidence Confident

Genome information
Genome ID	UHGV-2165149
vOTU ID	vOTU-007652
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029871\|Ga0245314_100012\|provirus_253124_319871
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.84% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9586
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.18
Jumbo phage	No

Genome content
Genome length	42,535 bps
GC content	43.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	92.93%
Average CDS length	672.97 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2165149_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2165149_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2165149_1	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-2165149_1	eggNOG-mapper	537013.CLOSTMETH_02040	NA	NA
UHGV-2165149_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2165149_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2165149_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2165149_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2165149_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2165149_2	PHROG	phrog_1914	NA	unknown function
UHGV-2165149_2	UniRef90	UniRef90_A0A2V2FH92	Peptidase_M78 domain-containing protein	NA
UHGV-2165149_2	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2165149_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2165149_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2165149_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2165149_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2165149_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2165149_4	UniRef90	UniRef90_A0A2V2FGH5	HTH cro/C1-type domain-containing protein	NA
UHGV-2165149_4	eggNOG-mapper	246194.CHY_1697	Peptidase S24-like	NA
UHGV-2165149_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2165149_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2165149_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2165149_6	UniRef90	UniRef90_UPI000A113527	helix-turn-helix domain-containing protein	NA
UHGV-2165149_6	eggNOG-mapper	97138.C820_00804	sequence-specific DNA binding	NA
UHGV-2165149_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2165149_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2165149_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2165149_9	PHROG	phrog_9958	NA	unknown function
UHGV-2165149_9	UniRef90	UniRef90_W0U729	NA	NA
UHGV-2165149_9	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-2165149_9	Structural annotation	PF19789	NA	NA
UHGV-2165149_10	UniRef90	UniRef90_D7GXC2	Archaeal holliday junction resolvase (Hjc)	NA
UHGV-2165149_10	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-2165149_10	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-2165149_10	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-2165149_11	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-2165149_11	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2165149_11	UniRef90	UniRef90_A0A849CVE0	DEAD/DEAH box helicase family protein	NA
UHGV-2165149_11	eggNOG-mapper	1232453.BAIF02000010_gene3343	Type III restriction protein res subunit	NA
UHGV-2165149_11	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2165149_11	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2165149_11	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2165149_11	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2165149_11	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-2165149_12	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2165149_12	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2165149_12	UniRef90	UniRef90_H2J9Y5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2165149_12	eggNOG-mapper	1121334.KB911068_gene2281	C-5 cytosine-specific DNA methylase	NA
UHGV-2165149_12	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-2165149_12	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2165149_12	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2165149_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2165149_12	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-2165149_13	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2165149_13	UniRef90	UniRef90_R6MZ51	DNA polymerase elongation subunit (Family B)	NA
UHGV-2165149_13	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-2165149_13	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-2165149_13	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-2165149_14	PHROG	phrog_799	DNA methyltransferase	other
UHGV-2165149_14	UniRef90	UniRef90_A0A373KMH1	NAD(P)-dependent oxidoreductase	NA
UHGV-2165149_14	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-2165149_14	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-2165149_14	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-2165149_15	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2165149_15	UniRef90	UniRef90_UPI001A9A8367	ERF family protein	NA
UHGV-2165149_15	Pfam	PF04404	ERF superfamily	ERF
UHGV-2165149_15	Structural annotation	PF04404	NA	NA
UHGV-2165149_16	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2165149_16	UniRef90	UniRef90_UPI00164ECEF5	YqaJ viral recombinase family protein	NA
UHGV-2165149_16	eggNOG-mapper	1219626.HMPREF1639_07320	YqaJ viral recombinase family	NA
UHGV-2165149_16	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2165149_16	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2165149_16	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-2165149_17	Structural annotation	PF05037	NA	NA
UHGV-2165149_18	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-2165149_18	PHROG	phrog_5889	NA	unknown function
UHGV-2165149_18	UniRef90	UniRef90_A0A1C6D653	Predicted HD-superfamily hydrolase	NA
UHGV-2165149_18	eggNOG-mapper	1219626.HMPREF1639_07345	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-2165149_18	Pfam	PF01966	HD domain	HD
UHGV-2165149_18	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-2165149_18	Structural annotation	PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-2165149_19	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2165149_19	UniRef90	UniRef90_UPI001899186E	primase C-terminal domain-containing protein	NA
UHGV-2165149_19	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-2165149_19	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-2165149_19	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-2165149_19	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-2165149_26	PHROG	phrog_6721	NA	unknown function
UHGV-2165149_26	eggNOG-mapper	428125.CLOLEP_01387	NA	NA
UHGV-2165149_26	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-2165149_27	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2165149_27	UniRef90	UniRef90_H1CER1	Phage/plasmid primase, P4 family domain-containing protein	NA
UHGV-2165149_27	eggNOG-mapper	649747.HMPREF0083_00553	Phage plasmid primase, P4 family	NA
UHGV-2165149_27	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2165149_27	Pfam	PF19263	NA	DUF5906
UHGV-2165149_27	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2165149_27	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2165149_27	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2165149_27	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-2165149_28	Structural annotation	PF13744, TIGR03070, COG1396	NA	NA
UHGV-2165149_29	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2165149_29	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-2165149_29	eggNOG-mapper	877421.AUJT01000054_gene66	NA	NA
UHGV-2165149_29	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2165149_29	Structural annotation	PF16677	NA	NA
UHGV-2165149_34	UniRef90	UniRef90_A0A417DZ16	HTH cro/C1-type domain-containing protein	NA
UHGV-2165149_34	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-2165149_35	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2165149_35	UniRef90	UniRef90_A0A0R2G693	NA	NA
UHGV-2165149_35	eggNOG-mapper	526218.Sterm_1322	BRO family, N-terminal domain	NA
UHGV-2165149_35	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2165149_35	COG	COG3617	Prophage antirepressor	NA
UHGV-2165149_35	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-2165149_36	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-2165149_36	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-2165149_36	UniRef90	UniRef90_I0GVI7	Putative DNA-invertase	NA
UHGV-2165149_36	eggNOG-mapper	1280706.AUJE01000062_gene1532	Resolvase, N terminal domain	NA
UHGV-2165149_36	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2165149_36	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2165149_36	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-2165149_38	PHROG	phrog_1233	NA	unknown function
UHGV-2165149_38	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-2165149_38	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-2165149_39	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2165149_39	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-2165149_39	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-2165149_39	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2165149_39	COG	COG5410	NA	NA
UHGV-2165149_39	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-2165149_40	PHROG	phrog_64	portal protein	head and packaging
UHGV-2165149_40	UniRef90	UniRef90_A0A414B012	Phage portal protein	NA
UHGV-2165149_40	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2165149_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2165149_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2165149_41	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2165149_41	UniRef90	UniRef90_A0A1C5WCC8	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2165149_41	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2165149_41	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2165149_41	COG	COG2369	NA	NA
UHGV-2165149_41	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2165149_44	PHROG	phrog_1328	major head protein	head and packaging
UHGV-2165149_44	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-2165149_44	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-2165149_44	Pfam	PF17236	NA	DUF5309
UHGV-2165149_44	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-2165149_45	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-2165149_45	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-2165149_45	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2165149_45	Structural annotation	TIGR01560	NA	NA
UHGV-2165149_46	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-2165149_48	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-2165149_49	PHROG	phrog_158	major tail protein	tail
UHGV-2165149_49	UniRef90	UniRef90_D7GNW1	Phage tail protein	NA
UHGV-2165149_49	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-2165149_49	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2165149_50	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-2165149_50	eggNOG-mapper	1211844.CBLM010000023_gene988	NA	NA
UHGV-2165149_50	Pfam	PF16478	NA	DUF5055
UHGV-2165149_50	Structural annotation	PF16478	NA	NA
UHGV-2165149_51	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-2165149_52	PHROG	phrog_28918	NA	unknown function
UHGV-2165149_52	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-2165149_52	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-2165149_52	Structural annotation	PF09325	NA	NA
UHGV-2165149_53	PHROG	phrog_1194	NA	unknown function
UHGV-2165149_53	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-2165149_53	Pfam	PF20458	NA	DUF6711
UHGV-2165149_53	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2165149_54	PHROG	phrog_6616	tail protein	tail
UHGV-2165149_54	eggNOG-mapper	445971.ANASTE_00088	NA	NA
UHGV-2165149_54	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2165149_54	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2165149_58	PHROG	phrog_1863	NA	unknown function
UHGV-2165149_58	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-2165149_59	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-2165149_59	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-2165149_59	UniRef90	UniRef90_UPI0010652D18	M23 family metallopeptidase	NA
UHGV-2165149_59	eggNOG-mapper	665956.HMPREF1032_00102	heme binding	NA
UHGV-2165149_59	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2165149_59	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2165149_59	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-2165149_59	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2165149_59	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2165149_59	Structural annotation	PF04531, COG5546, COG3942	NA	NA