UHGV-2165353

Genome information

Genome length 35,340 bps

CDS count 34

Completeness 68.82% (medium-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-2165353
vOTU ID	vOTU-017098
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029845\|Ga0245277_1000476\|provirus_2_35341
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	68.82% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.1
Jumbo phage	No

Genome content
Genome length	35,340 bps
GC content	58.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	95.81%
Average CDS length	999.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2165353_3	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2165353_3	UniRef90	UniRef90_A0A8A5FDW2	Host-nuclease inhibitor Gam family protein	NA
UHGV-2165353_3	eggNOG-mapper	742727.HMPREF9447_01724	Bacteriophage Mu Gam like protein	NA
UHGV-2165353_3	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-2165353_3	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-2165353_3	Structural annotation	PF07352, COG4396	NA	NA
UHGV-2165353_7	UniRef90	UniRef90_A0A8F1K3X3	DNA-binding protein	NA
UHGV-2165353_7	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2165353_9	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-2165353_9	PHROG	phrog_2649	endolysin	lysis
UHGV-2165353_9	UniRef90	UniRef90_A0A857ZST6	Peptidase_M15_4 domain-containing protein	NA
UHGV-2165353_9	eggNOG-mapper	349741.Amuc_1134	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-2165353_9	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-2165353_9	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-2165353_9	Structural annotation	NF000472, COG2173	NA	NA
UHGV-2165353_12	UniRef90	UniRef90_A0A7G6DWZ3	NA	NA
UHGV-2165353_13	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2165353_13	UniRef90	UniRef90_A0A1C7P9U0	Terminase-like family	NA
UHGV-2165353_13	eggNOG-mapper	278957.ABEA03000094_gene4689	Mu-like prophage FluMu protein gp28	NA
UHGV-2165353_13	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2165353_13	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-2165353_14	eggNOG-mapper	794903.OPIT5_21795	Mu-like prophage FluMu protein gp28	NA
UHGV-2165353_14	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-2165353_15	PHROG	phrog_113	portal protein	head and packaging
UHGV-2165353_15	UniRef90	UniRef90_A0A857Z5Q4	PBECR2 domain-containing protein	NA
UHGV-2165353_15	eggNOG-mapper	278957.ABEA03000019_gene1900	Mu-like prophage protein gp29	NA
UHGV-2165353_15	Pfam	PF06074	NA	DUF935
UHGV-2165353_15	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-2165353_15	COG	COG4383	NA	NA
UHGV-2165353_16	PHROG	phrog_328	head maturation protease	head and packaging
UHGV-2165353_16	UniRef90	UniRef90_A0A3E1EBJ4	Mu-like prophage I protein	NA
UHGV-2165353_16	eggNOG-mapper	552398.HMPREF0866_02218	Mu-like prophage I protein	NA
UHGV-2165353_16	Pfam	PF10123	Mu-like prophage I protein	Mu-like_Pro
UHGV-2165353_16	COG	COG4388	Mu-like prophage I protein	NA
UHGV-2165353_18	PHROG	phrog_1005	major head protein	head and packaging
UHGV-2165353_18	eggNOG-mapper	278957.ABEA03000019_gene1905	NA	NA
UHGV-2165353_19	UniRef90	UniRef90_A0A2N8I9T0	NA	NA
UHGV-2165353_19	Structural annotation	PF07030, COG4387	NA	NA
UHGV-2165353_20	eggNOG-mapper	278957.ABEA03000019_gene1901	NA	NA
UHGV-2165353_21	Structural annotation	PF20039	NA	NA
UHGV-2165353_22	COG	COG2928	NA	NA
UHGV-2165353_25	Structural annotation	PF05587, PF03388, COG3506	NA	NA
UHGV-2165353_28	PHROG	phrog_3742	NA	unknown function
UHGV-2165353_28	eggNOG-mapper	349741.Amuc_2058	NA	NA
UHGV-2165353_29	PHROG	phrog_3437	major head protein	head and packaging
UHGV-2165353_29	UniRef90	UniRef90_UPI000C9C4EF8	phage capsid protein	NA
UHGV-2165353_29	eggNOG-mapper	349741.Amuc_1497	NA	NA
UHGV-2165353_29	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-2165353_29	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2165353_30	Structural annotation	PF17212	NA	NA
UHGV-2165353_31	PHROG	phrog_376	tail protein	tail
UHGV-2165353_31	eggNOG-mapper	349741.Amuc_1819	NA	NA
UHGV-2165353_31	Structural annotation	PF11134, MF_01605, NF008258, COG4247	NA	NA
UHGV-2165353_34	PHROG	phrog_30335	NA	unknown function
UHGV-2165353_34	UniRef90	UniRef90_A0A2N8IT43	LPD3 domain-containing protein	NA
UHGV-2165353_34	eggNOG-mapper	1123296.JQKE01000020_gene1014	extracellular polysaccharide biosynthetic process	NA
UHGV-2165353_34	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-2165353_34	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-2165353_34	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA