UHGV-2165517

Genome information

Genome length 41,848 bps

CDS count 61

Completeness 97.87% (high-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-2165517
vOTU ID	vOTU-075685
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029793\|Ga0243738_1000173\|provirus_59154_101001
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.87% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.34
Jumbo phage	No

Genome content
Genome length	41,848 bps
GC content	45.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.22%
Average CDS length	629.31 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2165517_1	KOfam	K04078	groES, HSPE1; chaperonin GroES	NA
UHGV-2165517_1	PHROG	phrog_3188	co-chaperonin GroES	other
UHGV-2165517_1	UniRef90	UniRef90_R9MVS9	Co-chaperonin GroES	NA
UHGV-2165517_1	eggNOG-mapper	397287.C807_01760	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	NA
UHGV-2165517_1	Pfam	PF00166	Chaperonin 10 Kd subunit	Cpn10
UHGV-2165517_1	NCBIFam	NF001531.0	co-chaperone GroES	NA
UHGV-2165517_1	COG	COG0234	Co-chaperonin GroES (HSP10)	NA
UHGV-2165517_1	HAMAP	MF_00580	Co-chaperonin GroES [groES]	NA
UHGV-2165517_1	Structural annotation	PF00166, MF_00580, NF001531, COG0234	NA	NA
UHGV-2165517_2	KOfam	K07273	acm; lysozyme	NA
UHGV-2165517_2	PHROG	phrog_291	endolysin	lysis
UHGV-2165517_2	UniRef90	UniRef90_A0A1C5ZRX7	Autolytic lysozyme	NA
UHGV-2165517_2	eggNOG-mapper	1226325.HMPREF1548_03449	Glycosyl hydrolases family 25	NA
UHGV-2165517_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2165517_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2165517_2	Structural annotation	PF01183, COG3757	NA	NA
UHGV-2165517_3	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-2165517_4	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-2165517_5	PHROG	phrog_918	NA	unknown function
UHGV-2165517_5	UniRef90	UniRef90_UPI0004D82A84	NA	NA
UHGV-2165517_5	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-2165517_5	Pfam	PF19791	NA	DUF6275
UHGV-2165517_5	Structural annotation	PF19791	NA	NA
UHGV-2165517_6	PHROG	phrog_199	holin	lysis
UHGV-2165517_6	UniRef90	UniRef90_A0A1C5ZRM9	Phage-related holin (Lysis protein)	NA
UHGV-2165517_6	eggNOG-mapper	742740.HMPREF9474_04290	Bacteriophage holin family	NA
UHGV-2165517_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2165517_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2165517_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2165517_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2165517_7	PHROG	phrog_18593	NA	unknown function
UHGV-2165517_7	UniRef90	UniRef90_R5HAU4	Carbohydrate binding domain protein	NA
UHGV-2165517_7	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-2165517_7	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2165517_7	Structural annotation	PF14600	NA	NA
UHGV-2165517_10	PHROG	phrog_18725	NA	unknown function
UHGV-2165517_10	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-2165517_11	PHROG	phrog_13879	NA	unknown function
UHGV-2165517_11	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-2165517_11	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-2165517_12	PHROG	phrog_1194	NA	unknown function
UHGV-2165517_12	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-2165517_12	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2165517_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2165517_13	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-2165517_13	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-2165517_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2165517_14	PHROG	phrog_706	NA	unknown function
UHGV-2165517_14	UniRef90	UniRef90_R7N4A5	Bacteriophage Gp15 protein	NA
UHGV-2165517_14	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-2165517_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2165517_15	UniRef90	UniRef90_A0A3B9CD56	RNA polymerase subunit sigma	NA
UHGV-2165517_15	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-2165517_15	Pfam	PF20378	NA	DUF6673
UHGV-2165517_15	Structural annotation	PF10666	NA	NA
UHGV-2165517_16	PHROG	phrog_3099	NA	unknown function
UHGV-2165517_16	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-2165517_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2165517_17	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2165517_17	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-2165517_17	UniRef90	UniRef90_A0A4R3JPG1	Phage anti-repressor protein	NA
UHGV-2165517_17	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-2165517_17	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2165517_17	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2165517_17	COG	COG3617	Prophage antirepressor	NA
UHGV-2165517_17	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-2165517_18	UniRef90	UniRef90_A0A2N2BU09	CopG family transcriptional regulator	NA
UHGV-2165517_18	eggNOG-mapper	445971.ANASTE_00673	NA	NA
UHGV-2165517_18	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-2165517_19	PHROG	phrog_3266	tail completion	connector
UHGV-2165517_19	eggNOG-mapper	1292035.H476_1010	NA	NA
UHGV-2165517_19	Structural annotation	PF12691	NA	NA
UHGV-2165517_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2165517_20	UniRef90	UniRef90_UPI001D069E73	minor capsid protein	NA
UHGV-2165517_20	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-2165517_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2165517_20	Structural annotation	PF11114	NA	NA
UHGV-2165517_21	PHROG	phrog_3366	NA	unknown function
UHGV-2165517_21	Pfam	PF20536	NA	DUF6751
UHGV-2165517_21	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-2165517_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2165517_24	PHROG	phrog_422	major head protein	head and packaging
UHGV-2165517_24	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-2165517_24	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-2165517_24	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2165517_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2165517_25	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-2165517_25	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2165517_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2165517_25	Structural annotation	PF06810	NA	NA
UHGV-2165517_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2165517_27	UniRef90	UniRef90_UPI00156DAD02	phage minor capsid protein	NA
UHGV-2165517_27	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-2165517_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2165517_27	COG	COG2369	NA	NA
UHGV-2165517_27	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-2165517_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-2165517_28	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-2165517_28	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-2165517_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2165517_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2165517_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2165517_29	UniRef90	UniRef90_A0A3E3HWR5	Terminase_3 domain-containing protein	NA
UHGV-2165517_29	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-2165517_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-2165517_29	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2165517_30	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-2165517_30	UniRef90	UniRef90_UPI001C3AE805	Terminase	NA
UHGV-2165517_30	eggNOG-mapper	1235798.C817_03483	DNA packaging	NA
UHGV-2165517_30	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2165517_30	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2165517_30	COG	COG5484	NA	NA
UHGV-2165517_30	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-2165517_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2165517_33	UniRef90	UniRef90_A0A7G5MSQ2	RNA polymerase subunit sigma-70	NA
UHGV-2165517_33	eggNOG-mapper	1235798.C817_03486	NA	NA
UHGV-2165517_33	Structural annotation	PF02996	NA	NA
UHGV-2165517_36	PHROG	phrog_15198	NA	unknown function
UHGV-2165517_36	UniRef90	UniRef90_R6ZHE4	NA	NA
UHGV-2165517_36	eggNOG-mapper	742733.HMPREF9469_00921	NA	NA
UHGV-2165517_36	Pfam	PF04448	NA	DUF551
UHGV-2165517_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2165517_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2165517_40	UniRef90	UniRef90_UPI001897F4FC	AAA family ATPase	NA
UHGV-2165517_40	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-2165517_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2165517_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2165517_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-2165517_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2165517_41	PHROG	phrog_9804	NA	unknown function
UHGV-2165517_41	UniRef90	UniRef90_UPI0010F7C879	replicative helicase loader/inhibitor	NA
UHGV-2165517_41	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2165517_42	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2165517_42	UniRef90	UniRef90_UPI00189CEC52	NA	NA
UHGV-2165517_42	eggNOG-mapper	290402.Cbei_1623	NA	NA
UHGV-2165517_42	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2165517_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2165517_42	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-2165517_43	PHROG	phrog_1029	NA	unknown function
UHGV-2165517_43	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-2165517_43	eggNOG-mapper	1232453.BAIF02000057_gene1140	NA	NA
UHGV-2165517_43	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2165517_44	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2165517_44	eggNOG-mapper	1298920.KI911353_gene2719	NA	NA
UHGV-2165517_45	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-2165517_45	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-2165517_46	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2165517_46	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-2165517_46	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2165517_47	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2165517_47	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-2165517_47	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-2165517_47	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-2165517_48	PHROG	phrog_674	NA	unknown function
UHGV-2165517_48	UniRef90	UniRef90_A0A416HMJ3	NA	NA
UHGV-2165517_48	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-2165517_48	Pfam	PF07083	NA	DUF1351
UHGV-2165517_48	Structural annotation	PF07083	NA	NA
UHGV-2165517_49	eggNOG-mapper	411902.CLOBOL_05754	NA	NA
UHGV-2165517_53	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-2165517_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2165517_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2165517_56	UniRef90	UniRef90_A0A1C5S0Q3	Transcriptional regulator, y4mF family	NA
UHGV-2165517_56	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-2165517_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2165517_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2165517_56	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2165517_57	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2165517_57	UniRef90	UniRef90_A0A1C5S0D9	Helix-turn-helix	NA
UHGV-2165517_57	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-2165517_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2165517_57	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2165517_57	Structural annotation	PF12844, MF_00584, NF041951, COG1476	NA	NA
UHGV-2165517_58	PHROG	phrog_87	metallo-protease	other
UHGV-2165517_58	UniRef90	UniRef90_A0A1C5S0H8	Metallopeptidase immA	NA
UHGV-2165517_58	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-2165517_58	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2165517_58	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2165517_58	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2165517_59	PHROG	phrog_5319	outer membrane protein	other
UHGV-2165517_59	UniRef90	UniRef90_A0A1C5S0D2	Predicted membrane protein	NA
UHGV-2165517_59	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-2165517_59	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2165517_59	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2165517_59	Structural annotation	PF03843, PF12773, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-2165517_60	PHROG	phrog_16228	NA	unknown function
UHGV-2165517_60	UniRef90	UniRef90_A0A416L7T2	Uma2 family endonuclease	NA
UHGV-2165517_60	eggNOG-mapper	97139.C824_00067	Putative restriction endonuclease	NA
UHGV-2165517_60	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-2165517_60	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-2165517_60	Structural annotation	PF05685, COG4636	NA	NA
UHGV-2165517_61	KOfam	K14059	int; integrase	NA
UHGV-2165517_61	PHROG	phrog_1	integrase	integration and excision
UHGV-2165517_61	UniRef90	UniRef90_UPI001C011E7D	tyrosine-type recombinase/integrase	NA
UHGV-2165517_61	eggNOG-mapper	1462527.CCDM010000010_gene473	Phage integrase family	NA
UHGV-2165517_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2165517_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2165517_61	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA