UHGV-2165740

Genome information

Genome length 46,362 bps

CDS count 71

Completeness 93.95% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-2165740
vOTU ID	vOTU-014650
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029853\|Ga0245292_100150\|provirus_29681_76042
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.95% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.86
Jumbo phage	No

Genome content
Genome length	46,362 bps
GC content	49.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.32%
Average CDS length	592.23 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2165740_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2165740_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2165740_1	UniRef90	UniRef90_UPI0015BF142B	site-specific integrase	NA
UHGV-2165740_1	eggNOG-mapper	742727.HMPREF9447_03572	Belongs to the 'phage' integrase family	NA
UHGV-2165740_1	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-2165740_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2165740_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2165740_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2165740_1	Structural annotation	PF00589, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-2165740_2	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-2165740_2	eggNOG-mapper	742725.HMPREF9450_02112	NA	NA
UHGV-2165740_3	PHROG	phrog_38431	NA	unknown function
UHGV-2165740_3	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-2165740_3	eggNOG-mapper	445970.ALIPUT_01628	NA	NA
UHGV-2165740_5	PHROG	phrog_28898	NA	unknown function
UHGV-2165740_5	eggNOG-mapper	742725.HMPREF9450_02107	NA	NA
UHGV-2165740_5	Structural annotation	PF10781	NA	NA
UHGV-2165740_7	PHROG	phrog_16490	NA	unknown function
UHGV-2165740_7	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-2165740_7	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-2165740_8	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-2165740_8	Structural annotation	PF08299, NF004688	NA	NA
UHGV-2165740_9	PHROG	phrog_26448	NA	unknown function
UHGV-2165740_9	eggNOG-mapper	742726.HMPREF9448_01214	NA	NA
UHGV-2165740_9	Pfam	PF20647	NA	DUF6808
UHGV-2165740_9	Structural annotation	PF20647	NA	NA
UHGV-2165740_10	PHROG	phrog_873	endolysin	head and packaging
UHGV-2165740_10	UniRef90	UniRef90_UPI0018ABA41D	structural protein P5	NA
UHGV-2165740_10	eggNOG-mapper	411477.PARMER_01682	NA	NA
UHGV-2165740_12	PHROG	phrog_15037	NA	unknown function
UHGV-2165740_12	UniRef90	UniRef90_UPI0015E74944	phage holin family protein	NA
UHGV-2165740_12	eggNOG-mapper	1347393.HG726021_gene389	NA	NA
UHGV-2165740_14	Structural annotation	PF02185	NA	NA
UHGV-2165740_15	Pfam	PF07196	Flagellin hook IN motif	Flagellin_IN
UHGV-2165740_15	Structural annotation	PF07603	NA	NA
UHGV-2165740_17	eggNOG-mapper	1122981.AUME01000026_gene519	NA	NA
UHGV-2165740_18	PHROG	phrog_21217	NA	unknown function
UHGV-2165740_18	eggNOG-mapper	762984.HMPREF9445_00181	NA	NA
UHGV-2165740_19	PHROG	phrog_14295	NA	unknown function
UHGV-2165740_19	eggNOG-mapper	445970.ALIPUT_01650	NA	NA
UHGV-2165740_19	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2165740_20	PHROG	phrog_33698	NA	unknown function
UHGV-2165740_20	UniRef90	UniRef90_UPI001873A18B	BACON domain-containing protein	NA
UHGV-2165740_20	eggNOG-mapper	742767.HMPREF9456_03372	NA	NA
UHGV-2165740_21	Structural annotation	PF19266, TIGR02126, COG5437	NA	NA
UHGV-2165740_23	Structural annotation	PF05561	NA	NA
UHGV-2165740_25	eggNOG-mapper	1122971.BAME01000143_gene6480	NA	NA
UHGV-2165740_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-2165740_27	UniRef90	UniRef90_A0A2V2FQN4	Phage major capsid protein	NA
UHGV-2165740_27	eggNOG-mapper	292414.TM1040_1668	capsid protein	NA
UHGV-2165740_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2165740_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2165740_27	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-2165740_28	KOfam	K06904	NA	NA
UHGV-2165740_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2165740_28	eggNOG-mapper	1166018.FAES_3983	Caudovirus prohead serine protease	NA
UHGV-2165740_28	COG	COG3740	Phage head maturation protease	NA
UHGV-2165740_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-2165740_29	UniRef90	UniRef90_UPI00111ECBEF	phage portal protein	NA
UHGV-2165740_29	eggNOG-mapper	449673.BACSTE_00582	Phage portal protein	NA
UHGV-2165740_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2165740_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2165740_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2165740_30	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2165740_30	UniRef90	UniRef90_A0A497PCX3	Terminase	NA
UHGV-2165740_30	eggNOG-mapper	313596.RB2501_01375	Phage terminase large subunit	NA
UHGV-2165740_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2165740_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2165740_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2165740_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2165740_31	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2165740_31	UniRef90	UniRef90_UPI00039D57E3	DNA-packaging protein	NA
UHGV-2165740_31	eggNOG-mapper	1116369.KB890024_gene3033	DNA-packaging protein gp3	NA
UHGV-2165740_31	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2165740_31	Structural annotation	PF16677	NA	NA
UHGV-2165740_33	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2165740_33	PHROG	phrog_7785	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2165740_33	UniRef90	UniRef90_L1MYB0	Ftsk gamma domain protein	NA
UHGV-2165740_33	eggNOG-mapper	357276.EL88_08545	HNH endonuclease	NA
UHGV-2165740_33	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-2165740_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2165740_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2165740_34	UniRef90	UniRef90_A0A646HMC6	Helix-turn-helix transcriptional regulator	NA
UHGV-2165740_34	eggNOG-mapper	1492737.FEM08_04020	Peptidase S24-like	NA
UHGV-2165740_34	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2165740_34	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-2165740_39	KOfam	K03240	EIF2B5; translation initiation factor eIF-2B subunit epsilon	NA
UHGV-2165740_39	PHROG	phrog_5353	NA	unknown function
UHGV-2165740_39	UniRef90	UniRef90_UPI0018736416	acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase	NA
UHGV-2165740_39	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep
UHGV-2165740_39	Structural annotation	PF21711, MF_01525, TIGR03570, COG2171	NA	NA
UHGV-2165740_40	Structural annotation	PF13973, PF17384, COG1862	NA	NA
UHGV-2165740_42	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2165740_42	UniRef90	UniRef90_UPI00164C574E	DNA adenine methylase	NA
UHGV-2165740_42	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2165740_42	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-2165740_42	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2165740_42	Structural annotation	PF02086, NF008152, COG0338	NA	NA
UHGV-2165740_43	PHROG	phrog_8684	NA	unknown function
UHGV-2165740_43	UniRef90	UniRef90_UPI0018987415	YopX family protein	NA
UHGV-2165740_43	eggNOG-mapper	742767.HMPREF9456_02048	YopX protein	NA
UHGV-2165740_43	Pfam	PF09643	YopX protein	YopX
UHGV-2165740_43	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2165740_43	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2165740_48	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2165740_48	UniRef90	UniRef90_UPI0016270003	ERF family protein	NA
UHGV-2165740_48	eggNOG-mapper	1327970.R9ZVT8_9CAUD	ERF superfamily	NA
UHGV-2165740_48	Pfam	PF04404	ERF superfamily	ERF
UHGV-2165740_48	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2165740_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2165740_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2165740_51	UniRef90	UniRef90_UPI0018746783	single-stranded DNA-binding protein	NA
UHGV-2165740_51	eggNOG-mapper	742725.HMPREF9450_00761	Single-stranded DNA-binding protein	NA
UHGV-2165740_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2165740_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2165740_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2165740_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2165740_51	Structural annotation	PF00436, MF_00984, NF006445, COG0629	NA	NA
UHGV-2165740_52	eggNOG-mapper	742725.HMPREF9450_02078	NA	NA
UHGV-2165740_53	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2165740_53	UniRef90	UniRef90_UPI0018753CE6	recombination protein NinG	NA
UHGV-2165740_53	eggNOG-mapper	1268240.ATFI01000007_gene442	Bacteriophage Lambda NinG protein	NA
UHGV-2165740_53	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-2165740_53	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2165740_54	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2165740_54	UniRef90	UniRef90_UPI0013DE86F0	DnaD domain protein	NA
UHGV-2165740_54	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-2165740_54	Structural annotation	PF10771, MF_01177, NF041413, COG0640	NA	NA
UHGV-2165740_55	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-2165740_55	UniRef90	UniRef90_UPI0018749974	radical SAM protein	NA
UHGV-2165740_55	eggNOG-mapper	445970.ALIPUT_01609	radical SAM domain protein	NA
UHGV-2165740_55	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-2165740_55	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-2165740_58	PHROG	phrog_954	DNA methyltransferase	other
UHGV-2165740_58	UniRef90	UniRef90_B0MZV0	Methyltransf_11 domain-containing protein	NA
UHGV-2165740_58	eggNOG-mapper	445970.ALIPUT_02675	methyltransferase	NA
UHGV-2165740_58	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-2165740_58	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-2165740_58	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-2165740_58	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-2165740_60	Structural annotation	NF011227	NA	NA
UHGV-2165740_61	Structural annotation	PF16546	NA	NA
UHGV-2165740_69	PHROG	phrog_35741	NA	unknown function
UHGV-2165740_69	eggNOG-mapper	445970.ALIPUT_01619	NA	NA
UHGV-2165740_70	PHROG	phrog_8684	NA	unknown function
UHGV-2165740_70	UniRef90	UniRef90_UPI0018987415	YopX family protein	NA
UHGV-2165740_70	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-2165740_70	Pfam	PF09643	YopX protein	YopX
UHGV-2165740_70	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2165740_70	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2165740_71	PHROG	phrog_874	NA	unknown function
UHGV-2165740_71	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-2165740_71	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA