UHGV-2166140

Genome information

Genome length 31,765 bps

CDS count 49

Completeness 79.35% (medium-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-2166140
vOTU ID	vOTU-027065
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029793\|Ga0243738_1000102\|provirus_3_31767
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.94
Jumbo phage	No

Genome content
Genome length	31,765 bps
GC content	60.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.69%
Average CDS length	604.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2166140_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2166140_2	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-2166140_2	Structural annotation	PF08931	NA	NA
UHGV-2166140_3	eggNOG-mapper	1680.BADO_1227	NA	NA
UHGV-2166140_5	PHROG	phrog_9994	NA	unknown function
UHGV-2166140_5	eggNOG-mapper	1435051.BMOU_0220	NA	NA
UHGV-2166140_5	Structural annotation	PF20747	NA	NA
UHGV-2166140_7	PHROG	phrog_538	minor tail protein	tail
UHGV-2166140_7	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-2166140_7	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-2166140_7	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2166140_7	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2166140_8	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-2166140_8	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2166140_9	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2166140_9	UniRef90	UniRef90_A0A3E5HJQ8	Phage tail tape measure protein	NA
UHGV-2166140_9	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-2166140_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2166140_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2166140_9	COG	COG5283	Phage-related tail protein	NA
UHGV-2166140_9	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-2166140_10	UniRef90	UniRef90_A0A076JN63	DNAase primase	NA
UHGV-2166140_10	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-2166140_10	Structural annotation	PF08890	NA	NA
UHGV-2166140_11	PHROG	phrog_2491	major tail protein	tail
UHGV-2166140_11	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-2166140_11	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-2166140_11	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-2166140_12	UniRef90	UniRef90_A0A076JJ59	Transcriptional regulator	NA
UHGV-2166140_12	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-2166140_12	Structural annotation	PF06141	NA	NA
UHGV-2166140_13	PHROG	phrog_19109	NA	unknown function
UHGV-2166140_13	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-2166140_13	Structural annotation	TIGR01725	NA	NA
UHGV-2166140_14	PHROG	phrog_13779	NA	unknown function
UHGV-2166140_14	UniRef90	UniRef90_A0A087BHJ4	Phage associated protein	NA
UHGV-2166140_14	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-2166140_14	Pfam	PF19586	NA	DUF6093
UHGV-2166140_14	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-2166140_15	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2166140_15	UniRef90	UniRef90_A0A087BHJ5	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2166140_15	eggNOG-mapper	593907.Celgi_1301	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2166140_15	Structural annotation	PF09355	NA	NA
UHGV-2166140_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-2166140_17	UniRef90	UniRef90_UPI000C30DF47	phage major capsid protein	NA
UHGV-2166140_17	eggNOG-mapper	1273125.Rrhod_0602	Phage capsid family	NA
UHGV-2166140_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2166140_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2166140_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2166140_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2166140_19	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-2166140_19	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-2166140_20	PHROG	phrog_104	portal protein	head and packaging
UHGV-2166140_20	UniRef90	UniRef90_UPI000C3130D9	phage portal protein	NA
UHGV-2166140_20	eggNOG-mapper	1273125.Rrhod_0599	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2166140_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2166140_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2166140_21	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-2166140_21	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-2166140_21	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-2166140_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2166140_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2166140_23	PHROG	phrog_8680	NA	unknown function
UHGV-2166140_23	UniRef90	UniRef90_A0A087DRQ2	ParB-like protein	NA
UHGV-2166140_23	eggNOG-mapper	1680.BADO_1246	NA	NA
UHGV-2166140_23	Pfam	PF14386	NA	DUF4417
UHGV-2166140_23	Structural annotation	PF14386	NA	NA
UHGV-2166140_24	PHROG	phrog_226	minor tail protein	tail
UHGV-2166140_24	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-2166140_25	PHROG	phrog_1808	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2166140_25	UniRef90	UniRef90_A0A3G2KFW0	HNH endonuclease	NA
UHGV-2166140_25	eggNOG-mapper	350058.Mvan_4358	NA	NA
UHGV-2166140_26	PHROG	phrog_908	NA	unknown function
UHGV-2166140_26	UniRef90	UniRef90_A0A086ZNV6	PhnA protein	NA
UHGV-2166140_26	eggNOG-mapper	1435051.BMOU_0239	NA	NA
UHGV-2166140_27	Structural annotation	PF06013, MF_00683, NF035934	NA	NA
UHGV-2166140_28	PHROG	phrog_774	NA	unknown function
UHGV-2166140_28	UniRef90	UniRef90_A0A087DRP7	NA	NA
UHGV-2166140_28	eggNOG-mapper	1435051.BMOU_0242	Helix-turn-helix domain	NA
UHGV-2166140_28	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2166140_31	eggNOG-mapper	1680.BADO_1257	NA	NA
UHGV-2166140_31	Structural annotation	PF19885, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-2166140_35	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-2166140_35	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2166140_35	UniRef90	UniRef90_A0A0G9MAU2	Oligoribonuclease	NA
UHGV-2166140_35	eggNOG-mapper	566552.BIFCAT_00884	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-2166140_35	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-2166140_35	Structural annotation	PF00929, MF_00045, NF003765, COG1949	NA	NA
UHGV-2166140_36	PHROG	phrog_740	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2166140_36	UniRef90	UniRef90_A0A086ZNU8	Gp77 phage protein	NA
UHGV-2166140_36	eggNOG-mapper	398513.BBNG_00830	HNH endonuclease	NA
UHGV-2166140_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2166140_37	Structural annotation	PF02185, NF012003	NA	NA
UHGV-2166140_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2166140_38	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2166140_38	UniRef90	UniRef90_A0A6A2QXS5	ParB/RepB/Spo0J family partition protein	NA
UHGV-2166140_38	eggNOG-mapper	1435051.BMOU_0252	ParB-like nuclease domain	NA
UHGV-2166140_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2166140_38	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-2166140_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2166140_38	Structural annotation	PF02195, PF08535, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2166140_39	PHROG	phrog_3926	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2166140_39	UniRef90	UniRef90_A0A086ZNU5	Zinc finger protein	NA
UHGV-2166140_39	eggNOG-mapper	401473.BDP_0914	Helix-turn-helix domain	NA
UHGV-2166140_40	eggNOG-mapper	1435051.BMOU_0254	NA	NA
UHGV-2166140_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2166140_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2166140_41	UniRef90	UniRef90_A0A1E7XZ38	Single-stranded DNA-binding protein	NA
UHGV-2166140_41	eggNOG-mapper	1680.BADO_1267	Single-strand binding protein family	NA
UHGV-2166140_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2166140_41	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-2166140_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2166140_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2166140_41	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-2166140_45	UniRef90	UniRef90_A0A415BYU2	DNA-binding protein	NA
UHGV-2166140_45	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2166140_46	UniRef90	UniRef90_UPI0013B8606C	helix-turn-helix domain-containing protein	NA
UHGV-2166140_46	eggNOG-mapper	566552.BIFCAT_00899	NA	NA
UHGV-2166140_46	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-2166140_47	UniRef90	UniRef90_A0A1E7XZ53	HTH cro/C1-type domain-containing protein	NA
UHGV-2166140_47	eggNOG-mapper	566552.BIFCAT_00900	NA	NA
UHGV-2166140_48	UniRef90	UniRef90_A0A076JPS5	Cell surface protein	NA
UHGV-2166140_48	eggNOG-mapper	1680.BADO_1275	NA	NA
UHGV-2166140_49	KOfam	K14059	int; integrase	NA
UHGV-2166140_49	PHROG	phrog_1	integrase	integration and excision
UHGV-2166140_49	UniRef90	UniRef90_A0A1X2Z8V5	Phage integrase family protein	NA
UHGV-2166140_49	eggNOG-mapper	1680.BADO_1276	Phage integrase family	NA
UHGV-2166140_49	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2166140_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2166140_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2166140_49	Structural annotation	PF00589, MF_02055, NF040815, COG4974	NA	NA