UHGV-2167090

Genome information

Genome length 38,248 bps

CDS count 49

Completeness 90.08% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-2167090
vOTU ID	vOTU-073792
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029815\|Ga0244882_1000347\|provirus_1_38248
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.08% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.68
Jumbo phage	No

Genome content
Genome length	38,248 bps
GC content	44.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.28%
Average CDS length	731.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2167090_2	PHROG	phrog_15768	NA	unknown function
UHGV-2167090_2	UniRef90	UniRef90_UPI000E525AC6	NA	NA
UHGV-2167090_2	eggNOG-mapper	1125712.HMPREF1316_1538	NA	NA
UHGV-2167090_2	AcrCatalog	cluster_38323	NA	NA
UHGV-2167090_2	Pfam	PF19808	NA	DUF6291
UHGV-2167090_2	Structural annotation	PF19808	NA	NA
UHGV-2167090_5	UniRef90	UniRef90_UPI0011110A17	NA	NA
UHGV-2167090_5	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-2167090_7	UniRef90	UniRef90_UPI001C02F342	NA	NA
UHGV-2167090_7	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-2167090_9	PHROG	phrog_20593	NA	unknown function
UHGV-2167090_10	PHROG	phrog_1571	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2167090_10	UniRef90	UniRef90_A0A1Q9J7B4	HNHc domain-containing protein	NA
UHGV-2167090_10	eggNOG-mapper	702438.HMPREF9431_00759	HNH endonuclease	NA
UHGV-2167090_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2167090_10	Structural annotation	NF008448	NA	NA
UHGV-2167090_11	PHROG	phrog_874	NA	unknown function
UHGV-2167090_11	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-2167090_11	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2167090_12	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-2167090_12	UniRef90	UniRef90_W1I6Y1	Uncultured bacterium extrachromosomal DNA RGI01389	NA
UHGV-2167090_12	eggNOG-mapper	411461.DORFOR_01154	COG NOG12663 non supervised orthologous group	NA
UHGV-2167090_12	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-2167090_14	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2167090_14	UniRef90	UniRef90_A0A6L6XK67	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2167090_14	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-2167090_14	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2167090_14	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-2167090_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2167090_16	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2167090_16	UniRef90	UniRef90_A0A174GZ53	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2167090_16	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-2167090_16	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2167090_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2167090_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2167090_16	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2167090_18	eggNOG-mapper	1304866.K413DRAFT_4636	NA	NA
UHGV-2167090_18	Structural annotation	PF17457	NA	NA
UHGV-2167090_19	UniRef90	UniRef90_UPI001C02B1D3	NA	NA
UHGV-2167090_19	Pfam	PF20037	NA	DUF6440
UHGV-2167090_19	Structural annotation	PF20037	NA	NA
UHGV-2167090_20	PHROG	phrog_8680	NA	unknown function
UHGV-2167090_20	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-2167090_20	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2167090_20	Pfam	PF14386	NA	DUF4417
UHGV-2167090_20	Structural annotation	PF14386	NA	NA
UHGV-2167090_21	PHROG	phrog_9479	NA	unknown function
UHGV-2167090_21	eggNOG-mapper	511680.BUTYVIB_01226	NA	NA
UHGV-2167090_21	Structural annotation	PF15529	NA	NA
UHGV-2167090_22	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-2167090_22	UniRef90	UniRef90_UPI001C02085D	phage terminase small subunit-related protein	NA
UHGV-2167090_22	eggNOG-mapper	1449050.JNLE01000003_gene3896	DNA packaging	NA
UHGV-2167090_22	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2167090_22	COG	COG5484	NA	NA
UHGV-2167090_22	Structural annotation	PF06056, NF040601	NA	NA
UHGV-2167090_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2167090_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2167090_23	UniRef90	UniRef90_A0A6L5YJQ3	PBSX family phage terminase large subunit	NA
UHGV-2167090_23	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-2167090_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2167090_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2167090_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-2167090_23	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2167090_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-2167090_24	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-2167090_24	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2167090_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2167090_26	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2167090_26	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-2167090_26	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2167090_26	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2167090_26	Structural annotation	PF11114	NA	NA
UHGV-2167090_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2167090_27	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-2167090_27	eggNOG-mapper	642492.Clole_0816	NA	NA
UHGV-2167090_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2167090_27	COG	COG2369	NA	NA
UHGV-2167090_27	Structural annotation	PF06152	NA	NA
UHGV-2167090_28	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-2167090_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2167090_30	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-2167090_30	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-2167090_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2167090_31	PHROG	phrog_283	major head protein	head and packaging
UHGV-2167090_31	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-2167090_31	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-2167090_31	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-2167090_31	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2167090_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2167090_32	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-2167090_33	PHROG	phrog_3366	NA	unknown function
UHGV-2167090_33	eggNOG-mapper	411490.ANACAC_00775	NA	NA
UHGV-2167090_33	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2167090_34	PHROG	phrog_3266	tail completion	connector
UHGV-2167090_34	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-2167090_34	Structural annotation	PF12691	NA	NA
UHGV-2167090_35	PHROG	phrog_3099	NA	unknown function
UHGV-2167090_35	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2167090_36	PHROG	phrog_11299	NA	unknown function
UHGV-2167090_36	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-2167090_36	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-2167090_36	Pfam	PF20378	NA	DUF6673
UHGV-2167090_36	Structural annotation	PF10666	NA	NA
UHGV-2167090_37	PHROG	phrog_706	NA	unknown function
UHGV-2167090_37	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-2167090_37	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-2167090_37	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2167090_37	Structural annotation	PF06854	NA	NA
UHGV-2167090_38	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2167090_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2167090_38	UniRef90	UniRef90_A0A1C6JZ05	Phage-related protein	NA
UHGV-2167090_38	eggNOG-mapper	1235790.C805_00087	tape measure	NA
UHGV-2167090_38	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2167090_39	PHROG	phrog_1194	NA	unknown function
UHGV-2167090_39	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-2167090_39	Pfam	PF20458	NA	DUF6711
UHGV-2167090_39	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2167090_40	PHROG	phrog_18190	NA	unknown function
UHGV-2167090_40	UniRef90	UniRef90_UPI001C01E293	tail fiber domain-containing protein	NA
UHGV-2167090_40	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-2167090_40	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2167090_40	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2167090_41	PHROG	phrog_17196	kinase	other
UHGV-2167090_41	UniRef90	UniRef90_A0A3R6GQJ1	Peptidase S74 domain-containing protein	NA
UHGV-2167090_41	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-2167090_41	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2167090_41	Structural annotation	PF13619	NA	NA
UHGV-2167090_42	PHROG	phrog_1863	NA	unknown function
UHGV-2167090_42	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-2167090_43	PHROG	phrog_443	holin	lysis
UHGV-2167090_43	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-2167090_43	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-2167090_43	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2167090_43	Structural annotation	PF16945	NA	NA
UHGV-2167090_44	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-2167090_44	PHROG	phrog_2649	endolysin	lysis
UHGV-2167090_44	UniRef90	UniRef90_A0A3R6AVG7	M15 family peptidase	NA
UHGV-2167090_44	eggNOG-mapper	397290.C810_01418	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-2167090_44	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-2167090_44	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2167090_44	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-2167090_44	Structural annotation	PF02557, PF18342, MF_01924, NF007557, COG4991, COG2173	NA	NA
UHGV-2167090_45	KOfam	K01153	hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]	NA
UHGV-2167090_45	PHROG	phrog_3830	NA	unknown function
UHGV-2167090_45	UniRef90	UniRef90_A0A3D4Y084	Type I site-specific deoxyribonuclease	NA
UHGV-2167090_45	eggNOG-mapper	585394.RHOM_10865	Subunit R is required for both nuclease and ATPase activities, but not for modification	NA
UHGV-2167090_45	PADLOC	REase_I_00009	Type I restriction enzyme	RM
UHGV-2167090_45	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-2167090_45	Pfam	PF18766	SWI2/SNF2 ATPase	SWI2_SNF2
UHGV-2167090_45	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2167090_45	COG	COG0610	Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ...	NA
UHGV-2167090_46	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2167090_46	PHROG	phrog_2713	NA	unknown function
UHGV-2167090_46	UniRef90	UniRef90_C0FSX1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-2167090_46	eggNOG-mapper	500632.CLONEX_00766	type I restriction-modification system	NA
UHGV-2167090_46	PADLOC	MTase_I_00016	Type I methyltransferase	RM
UHGV-2167090_46	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2167090_46	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2167090_46	Structural annotation	PF02384, MF_00786, TIGR00497, COG0286	NA	NA
UHGV-2167090_47	KOfam	K01154	hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]	NA
UHGV-2167090_47	PHROG	phrog_2668	NA	unknown function
UHGV-2167090_47	UniRef90	UniRef90_A0A3D4XZY3	Restriction endonuclease subunit S (Fragment)	NA
UHGV-2167090_47	eggNOG-mapper	756272.Plabr_1457	COG0732 Restriction endonuclease S subunits	NA
UHGV-2167090_47	PADLOC	Specificity_I_00131	Type I specificity subunit	RM
UHGV-2167090_47	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-2167090_47	COG	COG0732	Restriction endonuclease S subunit	NA
UHGV-2167090_47	Structural annotation	PF01420, COG0732	NA	NA
UHGV-2167090_48	KOfam	K01154	hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]	NA
UHGV-2167090_48	PHROG	phrog_2668	NA	unknown function
UHGV-2167090_48	UniRef90	UniRef90_A0A0V8QI01	Methylase_S domain-containing protein	NA
UHGV-2167090_48	eggNOG-mapper	616991.JPOO01000001_gene4093	Type I restriction modification DNA specificity domain	NA
UHGV-2167090_48	PADLOC	Specificity_I_00017	Type I specificity subunit	RM
UHGV-2167090_48	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-2167090_48	COG	COG0732	Restriction endonuclease S subunit	NA
UHGV-2167090_48	Structural annotation	PF01420, NF007278, COG0732	NA	NA
UHGV-2167090_49	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-2167090_49	PHROG	phrog_1	integrase	integration and excision
UHGV-2167090_49	UniRef90	UniRef90_A0A413IZY9	Integrase	NA
UHGV-2167090_49	eggNOG-mapper	500632.CLONEX_00769	Belongs to the 'phage' integrase family	NA
UHGV-2167090_49	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2167090_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2167090_49	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2167090_49	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA