UHGV-2167621

Genome information

Genome length 25,489 bps

CDS count 32

Completeness 55.81% (medium-quality)

geNomad score 0.9561

Prediction confidence Confident

Genome information
Genome ID	UHGV-2167621
vOTU ID	vOTU-041658
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029791\|Ga0243849_1000189\|provirus_2_58179
BioSample	SAMN05971560
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9561
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.69
Jumbo phage	No

Genome content
Genome length	25,489 bps
GC content	51.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	94.89%
Average CDS length	761.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2167621_1	UniRef90	UniRef90_A0A1C6CN91	Tunicamycin resistance protein	NA
UHGV-2167621_1	eggNOG-mapper	171693.BN988_02450	AAA domain	NA
UHGV-2167621_1	Pfam	PF13238	AAA domain	AAA_18
UHGV-2167621_1	COG	COG1660	RNase adaptor protein RapZ for GlmZ sRNA degradation, contains a P-loop ATPase domain	NA
UHGV-2167621_2	PHROG	phrog_1194	NA	unknown function
UHGV-2167621_2	eggNOG-mapper	1235798.C817_04088	NA	NA
UHGV-2167621_2	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2167621_3	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-2167621_3	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-2167621_3	UniRef90	UniRef90_A0A1Y4NYS4	PhageMin_Tail domain-containing protein	NA
UHGV-2167621_3	eggNOG-mapper	476272.RUMHYD_01482	Phage tail tape measure protein, TP901 family	NA
UHGV-2167621_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2167621_3	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2167621_3	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-2167621_4	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-2167621_4	PHROG	phrog_2737	NA	unknown function
UHGV-2167621_4	UniRef90	UniRef90_A0A1Y4FIM7	RelB/DinJ family addiction module antitoxin	NA
UHGV-2167621_4	eggNOG-mapper	1232453.BAIF02000099_gene3784	RelB antitoxin	NA
UHGV-2167621_4	Pfam	PF04221	RelB antitoxin	RelB
UHGV-2167621_4	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-2167621_4	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-2167621_4	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-2167621_5	KOfam	K19158	yoeB; toxin YoeB [EC:3.1.-.-]	NA
UHGV-2167621_5	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2167621_5	UniRef90	UniRef90_A0A174L865	Putative mRNA interferase YoeB	NA
UHGV-2167621_5	eggNOG-mapper	1232453.BAIF02000099_gene3785	YoeB-like toxin of bacterial type II toxin-antitoxin system	NA
UHGV-2167621_5	Pfam	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
UHGV-2167621_5	NCBIFam	TIGR02116.1	Txe/YoeB family addiction module toxin	NA
UHGV-2167621_5	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-2167621_5	Structural annotation	PF06769, TIGR02116, COG4115	NA	NA
UHGV-2167621_6	PHROG	phrog_3033	NA	unknown function
UHGV-2167621_6	eggNOG-mapper	397288.C806_00769	NA	NA
UHGV-2167621_7	PHROG	phrog_709	NA	unknown function
UHGV-2167621_7	eggNOG-mapper	397288.C806_01516	NA	NA
UHGV-2167621_7	Structural annotation	PF11836	NA	NA
UHGV-2167621_8	PHROG	phrog_88	major tail protein	tail
UHGV-2167621_8	UniRef90	UniRef90_A0A1Y3WB65	Phage tail protein	NA
UHGV-2167621_8	eggNOG-mapper	1235800.C819_03956	phage major tail protein, phi13 family	NA
UHGV-2167621_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2167621_8	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2167621_9	PHROG	phrog_78	tail terminator	connector
UHGV-2167621_9	eggNOG-mapper	742741.HMPREF9475_02370	NA	NA
UHGV-2167621_9	Structural annotation	PF20765	NA	NA
UHGV-2167621_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2167621_10	UniRef90	UniRef90_UPI0011068C6C	HK97 gp10 family phage protein	NA
UHGV-2167621_10	eggNOG-mapper	1235799.C818_01014	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2167621_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2167621_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2167621_11	PHROG	phrog_25	head closure Hc1	connector
UHGV-2167621_11	UniRef90	UniRef90_A0A143XDU0	Phage head-tail joining protein	NA
UHGV-2167621_11	eggNOG-mapper	411490.ANACAC_00735	Phage head-tail joining protein	NA
UHGV-2167621_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2167621_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2167621_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2167621_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2167621_12	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2167621_12	UniRef90	UniRef90_A0A143XCH0	Phage gp6-like head-tail connector protein	NA
UHGV-2167621_12	eggNOG-mapper	552396.HMPREF0863_01437	Phage DNA packaging protein	NA
UHGV-2167621_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2167621_12	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2167621_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2167621_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-2167621_13	UniRef90	UniRef90_A0A143XDF8	Phage capsid family protein	NA
UHGV-2167621_13	eggNOG-mapper	397288.C806_00801	Phage capsid family	NA
UHGV-2167621_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2167621_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2167621_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2167621_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2167621_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2167621_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2167621_14	UniRef90	UniRef90_A0A143XE33	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2167621_14	eggNOG-mapper	476272.RUMHYD_01470	Belongs to the peptidase S14 family	NA
UHGV-2167621_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2167621_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2167621_14	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2167621_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-2167621_15	UniRef90	UniRef90_A0A1Y4S8E7	Phage portal protein	NA
UHGV-2167621_15	eggNOG-mapper	397288.C806_04877	Phage portal protein	NA
UHGV-2167621_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2167621_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2167621_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2167621_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2167621_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2167621_16	UniRef90	UniRef90_A0A143XDP2	Phage Terminase	NA
UHGV-2167621_16	eggNOG-mapper	552396.HMPREF0863_01433	large subunit	NA
UHGV-2167621_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2167621_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2167621_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2167621_16	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2167621_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2167621_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2167621_17	UniRef90	UniRef90_A0A143XS25	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2167621_17	eggNOG-mapper	1280681.AUJZ01000037_gene2543	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2167621_17	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-2167621_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2167621_17	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2167621_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2167621_17	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-2167621_18	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2167621_18	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2167621_18	UniRef90	UniRef90_A0A1Y3T9R6	ParB domain-containing protein	NA
UHGV-2167621_18	eggNOG-mapper	1280681.AUJZ01000037_gene2542	DNA binding	NA
UHGV-2167621_18	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2167621_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2167621_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2167621_18	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2167621_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2167621_19	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2167621_19	UniRef90	UniRef90_A0A1Y3T943	ParB domain-containing protein	NA
UHGV-2167621_19	eggNOG-mapper	1280681.AUJZ01000037_gene2541	DNA binding	NA
UHGV-2167621_19	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2167621_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2167621_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2167621_19	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-2167621_20	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2167621_20	UniRef90	UniRef90_A0A7X5EEX8	Terminase	NA
UHGV-2167621_20	eggNOG-mapper	1280681.AUJZ01000037_gene2540	NA	NA
UHGV-2167621_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2167621_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2167621_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2167621_21	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2167621_21	UniRef90	UniRef90_A0A1Y4NY79	HNH endonuclease	NA
UHGV-2167621_21	eggNOG-mapper	908340.HMPREF9406_0157	HNH endonuclease	NA
UHGV-2167621_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2167621_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2167621_21	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2167621_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2167621_22	UniRef90	UniRef90_A0A396PNV3	NA	NA
UHGV-2167621_22	eggNOG-mapper	1235802.C823_01505	sigma factor activity	NA
UHGV-2167621_22	Pfam	PF07374	NA	DUF1492
UHGV-2167621_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2167621_22	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-2167621_23	PHROG	phrog_7024	NA	unknown function
UHGV-2167621_23	eggNOG-mapper	689781.AUJX01000031_gene121	NA	NA
UHGV-2167621_23	AcrCatalog	cluster_1398	NA	NA
UHGV-2167621_24	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2167621_24	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2167621_24	UniRef90	UniRef90_A0A1Y3TG33	DEAD/DEAH box helicase	NA
UHGV-2167621_24	eggNOG-mapper	689781.AUJX01000031_gene122	SNF2 family N-terminal domain	NA
UHGV-2167621_24	PADLOC	DpdE_00003	DpdE	DPD
UHGV-2167621_24	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2167621_24	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2167621_24	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-2167621_25	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2167621_25	UniRef90	UniRef90_A0A1Y3TJD6	Nuclease	NA
UHGV-2167621_25	eggNOG-mapper	1408311.JNJM01000040_gene945	VRR_NUC	NA
UHGV-2167621_25	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-2167621_26	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2167621_26	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2167621_26	UniRef90	UniRef90_A0A1Y3T962	DNA primase	NA
UHGV-2167621_26	eggNOG-mapper	1235802.C823_01499	D5 N terminal like	NA
UHGV-2167621_26	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2167621_26	Pfam	PF19263	NA	DUF5906
UHGV-2167621_26	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2167621_26	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2167621_26	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-2167621_28	PHROG	phrog_408	NA	unknown function
UHGV-2167621_28	UniRef90	UniRef90_A0A414D4B9	DNA ligase	NA
UHGV-2167621_28	eggNOG-mapper	1408311.JNJM01000040_gene942	NA	NA
UHGV-2167621_29	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2167621_29	UniRef90	UniRef90_A0A1Y3T9S5	Nuclease	NA
UHGV-2167621_29	eggNOG-mapper	573061.Clocel_3999	NA	NA
UHGV-2167621_29	Pfam	PF10926	NA	DUF2800
UHGV-2167621_29	COG	COG2887	RecB family exonuclease	NA
UHGV-2167621_29	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2167621_30	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2167621_30	UniRef90	UniRef90_A0A396Q0J8	NA	NA
UHGV-2167621_30	eggNOG-mapper	471875.RUMLAC_02219	NA	NA
UHGV-2167621_30	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2167621_30	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2167621_31	COG	COG0086	DNA-directed RNA polymerase, beta' subunit/160 kD subunit	NA
UHGV-2167621_32	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2167621_32	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2167621_32	UniRef90	UniRef90_A0A1Y3T953	POLAc domain-containing protein	NA
UHGV-2167621_32	eggNOG-mapper	1408311.JNJM01000031_gene2485	DNA polymerase A domain	NA
UHGV-2167621_32	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2167621_32	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2167621_32	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA