UHGV-2168038

Genome information

vOTU vOTU-019165

Genome length 36,886 bps

CDS count 53

Completeness 85.73% (medium-quality)

geNomad score 0.9719

Prediction confidence Confident

Genome information
Genome ID	UHGV-2168038
vOTU ID	vOTU-019165
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029874\|Ga0245322_100532\|provirus_3_36888
BioSample	SAMEA3449372
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9719
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.04
Jumbo phage	No

Genome content
Genome length	36,886 bps
GC content	38.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.05%
Average CDS length	636.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2168038_1	PHROG	phrog_6616	tail protein	tail
UHGV-2168038_1	eggNOG-mapper	1121333.JMLH01000047_gene1007	NA	NA
UHGV-2168038_1	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2168038_2	PHROG	phrog_1194	NA	unknown function
UHGV-2168038_2	UniRef90	UniRef90_G0IA27	NA	NA
UHGV-2168038_2	eggNOG-mapper	1294142.CINTURNW_1701	NA	NA
UHGV-2168038_2	Pfam	PF20458	NA	DUF6711
UHGV-2168038_2	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2168038_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2168038_3	UniRef90	UniRef90_A8RD17	Cation diffusion facilitator family transporter	NA
UHGV-2168038_3	eggNOG-mapper	428127.EUBDOL_01563	homoserine transmembrane transporter activity	NA
UHGV-2168038_3	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-2168038_4	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-2168038_5	Pfam	PF16478	NA	DUF5055
UHGV-2168038_5	Structural annotation	PF16478	NA	NA
UHGV-2168038_6	PHROG	phrog_158	major tail protein	tail
UHGV-2168038_6	eggNOG-mapper	469596.HMPREF9488_01310	NA	NA
UHGV-2168038_6	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2168038_7	eggNOG-mapper	1121333.JMLH01000047_gene1014	NA	NA
UHGV-2168038_7	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-2168038_8	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-2168038_8	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-2168038_8	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2168038_9	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-2168038_10	UniRef90	UniRef90_A0A7C7ERG0	DNA-packaging protein	NA
UHGV-2168038_10	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-2168038_10	Structural annotation	TIGR01560	NA	NA
UHGV-2168038_12	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-2168038_12	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2168038_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-2168038_14	UniRef90	UniRef90_A0A3E3AE79	Phage portal protein	NA
UHGV-2168038_14	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2168038_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2168038_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2168038_15	Structural annotation	COG4416	NA	NA
UHGV-2168038_16	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2168038_16	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-2168038_16	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-2168038_16	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-2168038_16	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-2168038_16	COG	COG5410	NA	NA
UHGV-2168038_16	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-2168038_17	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-2168038_17	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-2168038_17	UniRef90	UniRef90_A0A3E3AEZ4	Recombinase family protein	NA
UHGV-2168038_17	eggNOG-mapper	641107.CDLVIII_2031	Resolvase, N terminal domain	NA
UHGV-2168038_17	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2168038_17	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2168038_17	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-2168038_18	Structural annotation	PF12844, TIGR02612, COG1396	NA	NA
UHGV-2168038_19	UniRef90	UniRef90_UPI0018AB0909	helix-turn-helix domain-containing protein	NA
UHGV-2168038_19	Structural annotation	PF12844, TIGR02612, COG1396	NA	NA
UHGV-2168038_20	PHROG	phrog_16683	NA	unknown function
UHGV-2168038_20	UniRef90	UniRef90_UPI001F427C1D	amidoligase family protein	NA
UHGV-2168038_20	eggNOG-mapper	411473.RUMCAL_01474	NA	NA
UHGV-2168038_20	Structural annotation	PF12224, MF_02111, NF010044, COG2170	NA	NA
UHGV-2168038_21	UniRef90	UniRef90_A0A1C6GC44	Glutamine amidotransferases class-II	NA
UHGV-2168038_21	eggNOG-mapper	1401067.HMPREF0872_03875	NA	NA
UHGV-2168038_21	Structural annotation	MF_01931, TIGR01134, COG0034	NA	NA
UHGV-2168038_22	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2168038_22	eggNOG-mapper	931276.Cspa_c57180	DNA-packaging protein gp3	NA
UHGV-2168038_22	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2168038_23	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2168038_23	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2168038_23	UniRef90	UniRef90_UPI001C2539AF	NA	NA
UHGV-2168038_23	eggNOG-mapper	1219626.HMPREF1639_07360	D5 N terminal like	NA
UHGV-2168038_23	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-2168038_23	Pfam	PF19263	NA	DUF5906
UHGV-2168038_23	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2168038_23	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2168038_23	Structural annotation	PF04735, MF_00974, MF_04000, NF005477, COG3378, COG0358	NA	NA
UHGV-2168038_25	Structural annotation	PF15959	NA	NA
UHGV-2168038_30	PHROG	phrog_111	DNA methyltransferase	other
UHGV-2168038_30	UniRef90	UniRef90_A0A1Y4EVK6	Adenine methyltransferase	NA
UHGV-2168038_30	eggNOG-mapper	1567011.A0A0A7RUD1_9VIRU	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-2168038_30	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-2168038_30	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-2168038_30	Structural annotation	PF05869, TIGR01712, COG2242	NA	NA
UHGV-2168038_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2168038_31	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-2168038_31	UniRef90	UniRef90_A0A373VYY6	DNA (cytosine-5-)-methyltransferase (Fragment)	NA
UHGV-2168038_31	eggNOG-mapper	482234.SCAZ3_10455	C-5 cytosine-specific DNA methylase	NA
UHGV-2168038_31	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-2168038_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2168038_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2168038_33	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2168038_33	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2168038_33	UniRef90	UniRef90_G9WTJ8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2168038_33	eggNOG-mapper	1408415.JHXL01000003_gene1146	COG0270 Site-specific DNA methylase	NA
UHGV-2168038_33	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2168038_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2168038_33	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2168038_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2168038_34	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-2168038_34	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-2168038_34	UniRef90	UniRef90_A0A1C5MWG4	mRNA interferase MazF4	NA
UHGV-2168038_34	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-2168038_34	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-2168038_34	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-2168038_34	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-2168038_37	PHROG	phrog_22292	NA	unknown function
UHGV-2168038_37	eggNOG-mapper	1232446.BAIE02000041_gene2433	NA	NA
UHGV-2168038_38	eggNOG-mapper	1336234.JAGN01000004_gene538	NA	NA
UHGV-2168038_40	PHROG	phrog_4019	NA	unknown function
UHGV-2168038_40	UniRef90	UniRef90_F9PY75	Conserved domain protein	NA
UHGV-2168038_41	PHROG	phrog_4856	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2168038_41	UniRef90	UniRef90_E2NR83	MazG domain-containing protein	NA
UHGV-2168038_41	eggNOG-mapper	1680.BADO_1259	NA	NA
UHGV-2168038_41	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-2168038_41	Structural annotation	MF_01019, NF002747, COG0140	NA	NA
UHGV-2168038_42	PHROG	phrog_6721	NA	unknown function
UHGV-2168038_42	eggNOG-mapper	428125.CLOLEP_01387	NA	NA
UHGV-2168038_42	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-2168038_44	PHROG	phrog_236	nucleotide kinase	other
UHGV-2168038_44	UniRef90	UniRef90_A0A8D9PGN7	Nucelotide kinase	NA
UHGV-2168038_44	eggNOG-mapper	1123263.AUKY01000015_gene1590	NA	NA
UHGV-2168038_44	Pfam	PF11753	NA	DUF3310
UHGV-2168038_44	Structural annotation	PF11753	NA	NA
UHGV-2168038_45	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2168038_45	UniRef90	UniRef90_A0A3E3AEG4	VRR-NUC domain-containing protein	NA
UHGV-2168038_45	eggNOG-mapper	90410.Q9XJD1_9CAUD	hydrolase activity, acting on ester bonds	NA
UHGV-2168038_45	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2168038_46	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2168038_46	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2168038_46	UniRef90	UniRef90_A0A374HMN2	ATP-dependent helicase	NA
UHGV-2168038_46	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-2168038_46	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2168038_46	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2168038_46	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2168038_46	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2168038_46	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2168038_47	eggNOG-mapper	1539298.JO41_12690	NA	NA
UHGV-2168038_47	Pfam	PF05037	NA	DUF669
UHGV-2168038_47	Structural annotation	PF05037	NA	NA
UHGV-2168038_48	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2168038_48	UniRef90	UniRef90_UPI001071CD7C	AAA family ATPase	NA
UHGV-2168038_48	eggNOG-mapper	1227360.C176_12573	AAA domain	NA
UHGV-2168038_48	Pfam	PF13479	AAA domain	AAA_24
UHGV-2168038_48	NCBIFam	TIGR01618.1	phage nucleotide-binding protein	NA
UHGV-2168038_48	Structural annotation	PF13479, MF_00350, TIGR01618, COG1066	NA	NA
UHGV-2168038_49	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2168038_49	UniRef90	UniRef90_A0A645E2H1	PDDEXK_1 domain-containing protein	NA
UHGV-2168038_49	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-2168038_49	COG	COG2887	RecB family exonuclease	NA
UHGV-2168038_49	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-2168038_50	UniRef90	UniRef90_A0A417IKZ6	DNA-binding protein	NA
UHGV-2168038_50	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2168038_52	UniRef90	UniRef90_A0A3C1N2P3	HTH cro/C1-type domain-containing protein	NA
UHGV-2168038_53	KOfam	K14059	int; integrase	NA
UHGV-2168038_53	PHROG	phrog_1	integrase	integration and excision
UHGV-2168038_53	UniRef90	UniRef90_UPI001EE781EB	site-specific integrase	NA
UHGV-2168038_53	eggNOG-mapper	1504823.CCMM01000008_gene1083	DNA integration	NA
UHGV-2168038_53	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2168038_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2168038_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2168038_53	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA