UHGV-2168699

Genome information

Genome length 24,942 bps

CDS count 43

Completeness 64.50% (medium-quality)

geNomad score 0.9725

Prediction confidence Confident

Genome information
Genome ID	UHGV-2168699
vOTU ID	vOTU-040449
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029828\|Ga0244885_100087\|provirus_1_24942
BioSample	SAMEA3708729
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9725
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.89
Jumbo phage	No

Genome content
Genome length	24,942 bps
GC content	46.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	90.35%
Average CDS length	528.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2168699_1	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2168699_1	UniRef90	UniRef90_A0A0G3WGN7	Tape measure protein	NA
UHGV-2168699_1	eggNOG-mapper	478749.BRYFOR_07547	Phage tail tape measure protein, TP901 family	NA
UHGV-2168699_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2168699_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2168699_1	COG	COG5283	Phage-related tail protein	NA
UHGV-2168699_1	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2168699_4	PHROG	phrog_2115	tail protein	tail
UHGV-2168699_4	eggNOG-mapper	509191.AEDB02000020_gene3251	NA	NA
UHGV-2168699_4	Structural annotation	PF11836	NA	NA
UHGV-2168699_6	PHROG	phrog_88	major tail protein	tail
UHGV-2168699_6	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-2168699_6	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-2168699_6	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2168699_6	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2168699_7	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2168699_7	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-2168699_7	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2168699_7	Structural annotation	TIGR01725	NA	NA
UHGV-2168699_8	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-2168699_8	Structural annotation	PF05657, COG3167	NA	NA
UHGV-2168699_9	PHROG	phrog_19734	NA	unknown function
UHGV-2168699_9	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-2168699_9	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-2168699_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2168699_10	PHROG	phrog_749	NA	unknown function
UHGV-2168699_10	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-2168699_10	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-2168699_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-2168699_11	UniRef90	UniRef90_UPI0018757887	phage major capsid protein	NA
UHGV-2168699_11	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-2168699_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2168699_11	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-2168699_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2168699_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2168699_11	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2168699_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2168699_12	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2168699_12	UniRef90	UniRef90_A0A1C6FFN6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2168699_12	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-2168699_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2168699_12	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2168699_12	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2168699_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-2168699_13	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-2168699_13	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-2168699_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2168699_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2168699_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2168699_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2168699_14	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-2168699_14	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-2168699_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2168699_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2168699_14	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2168699_15	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2168699_15	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-2168699_15	eggNOG-mapper	1415774.U728_1256	NA	NA
UHGV-2168699_15	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2168699_15	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2168699_16	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2168699_16	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-2168699_16	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-2168699_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2168699_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2168699_18	UniRef90	UniRef90_A0A353J147	XRE family transcriptional regulator	NA
UHGV-2168699_18	eggNOG-mapper	1415774.U728_2928	Helix-turn-helix XRE-family like proteins	NA
UHGV-2168699_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2168699_18	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2168699_19	PHROG	phrog_11237	NA	unknown function
UHGV-2168699_19	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-2168699_20	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-2168699_21	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-2168699_22	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-2168699_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2168699_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2168699_23	UniRef90	UniRef90_A0A352UR43	Single-stranded DNA-binding protein	NA
UHGV-2168699_23	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-2168699_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2168699_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2168699_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2168699_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2168699_23	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2168699_25	PHROG	phrog_7566	NA	unknown function
UHGV-2168699_25	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-2168699_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2168699_26	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-2168699_26	eggNOG-mapper	318464.IO99_13830	NA	NA
UHGV-2168699_26	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2168699_28	PHROG	phrog_15609	NA	unknown function
UHGV-2168699_28	UniRef90	UniRef90_UPI001875FF23	NA	NA
UHGV-2168699_28	eggNOG-mapper	1007096.BAGW01000031_gene118	NA	NA
UHGV-2168699_28	Pfam	PF11300	NA	DUF3102
UHGV-2168699_28	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-2168699_28	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-2168699_29	PHROG	phrog_8470	NA	unknown function
UHGV-2168699_29	UniRef90	UniRef90_UPI001875A728	PcfJ domain-containing protein	NA
UHGV-2168699_29	eggNOG-mapper	1157490.EL26_01845	PcfJ-like protein	NA
UHGV-2168699_29	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2168699_29	Structural annotation	PF14284	NA	NA
UHGV-2168699_30	PHROG	phrog_7445	NA	unknown function
UHGV-2168699_30	UniRef90	UniRef90_UPI000FD875FF	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2168699_30	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-2168699_30	Structural annotation	PF14058	NA	NA
UHGV-2168699_32	Structural annotation	PF01381, NF041575, COG1476	NA	NA
UHGV-2168699_39	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2168699_39	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2168699_39	UniRef90	UniRef90_H1CAF9	HTH cro/C1-type domain-containing protein	NA
UHGV-2168699_39	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-2168699_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2168699_39	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2168699_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2168699_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2168699_40	UniRef90	UniRef90_A0A1Q6SLN5	XRE family transcriptional regulator	NA
UHGV-2168699_40	eggNOG-mapper	553973.CLOHYLEM_07297	Transcriptional	NA
UHGV-2168699_40	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2168699_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2168699_40	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2168699_41	PHROG	phrog_1914	NA	unknown function
UHGV-2168699_41	UniRef90	UniRef90_A0A3D4VT22	Peptidase_M78 domain-containing protein	NA
UHGV-2168699_41	eggNOG-mapper	445971.ANASTE_00176	IrrE N-terminal-like domain	NA
UHGV-2168699_41	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2168699_41	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2168699_41	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2168699_42	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2168699_42	PHROG	phrog_95	integrase	integration and excision
UHGV-2168699_42	UniRef90	UniRef90_A0A7X8ETH7	Recombinase family protein	NA
UHGV-2168699_42	eggNOG-mapper	1120998.AUFC01000013_gene2937	NA	NA
UHGV-2168699_42	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2168699_42	Pfam	PF07508	Recombinase	Recombinase
UHGV-2168699_42	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2168699_42	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2168699_42	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2168699_43	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-2168699_43	PHROG	phrog_7573	NA	unknown function
UHGV-2168699_43	UniRef90	UniRef90_UPI001C0F924C	manganese catalase family protein	NA
UHGV-2168699_43	eggNOG-mapper	97138.C820_02770	PFAM Manganese containing catalase	NA
UHGV-2168699_43	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-2168699_43	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA