UHGV-2168894

Genome information

Genome length 41,776 bps

CDS count 74

Completeness 99.90% (high-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-2168894
vOTU ID	vOTU-010580
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029791\|Ga0243849_1000349\|provirus_14861_62186
BioSample	SAMN05971560
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.01
Jumbo phage	No

Genome content
Genome length	41,776 bps
GC content	51.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	90.36%
Average CDS length	515.31 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2168894_1	UniRef90	UniRef90_R5EBQ9	NA	NA
UHGV-2168894_1	eggNOG-mapper	1469948.JPNB01000001_gene1021	NA	NA
UHGV-2168894_1	Pfam	PF20037	NA	DUF6440
UHGV-2168894_2	PHROG	phrog_20274	NA	unknown function
UHGV-2168894_2	UniRef90	UniRef90_UPI001C119248	putative ABC transporter permease	NA
UHGV-2168894_2	eggNOG-mapper	608534.GCWU000341_02273	NA	NA
UHGV-2168894_2	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-2168894_2	COG	COG4905	NA	NA
UHGV-2168894_2	Structural annotation	PF06541, COG4905	NA	NA
UHGV-2168894_4	Structural annotation	PF12510	NA	NA
UHGV-2168894_5	PHROG	phrog_20016	NA	unknown function
UHGV-2168894_5	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-2168894_5	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-2168894_5	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2168894_6	PHROG	phrog_16490	NA	unknown function
UHGV-2168894_6	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-2168894_7	PHROG	phrog_22984	NA	unknown function
UHGV-2168894_8	PHROG	phrog_21718	NA	unknown function
UHGV-2168894_8	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-2168894_9	PHROG	phrog_3754	NA	unknown function
UHGV-2168894_9	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-2168894_10	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-2168894_11	PHROG	phrog_10091	holin	lysis
UHGV-2168894_11	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-2168894_11	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-2168894_11	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2168894_11	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2168894_11	COG	COG5546	NA	NA
UHGV-2168894_11	Structural annotation	COG5546	NA	NA
UHGV-2168894_12	PHROG	phrog_774	NA	unknown function
UHGV-2168894_12	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-2168894_13	PHROG	phrog_4105	NA	unknown function
UHGV-2168894_13	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-2168894_13	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-2168894_14	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2168894_14	PHROG	phrog_894	endolysin	lysis
UHGV-2168894_14	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-2168894_14	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-2168894_14	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2168894_14	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2168894_14	COG	COG3108	NA	NA
UHGV-2168894_14	Structural annotation	PF05951, PF01471, TIGR02869, COG3108	NA	NA
UHGV-2168894_15	eggNOG-mapper	994573.T472_0212005	NA	NA
UHGV-2168894_19	PHROG	phrog_9534	head protein	head and packaging
UHGV-2168894_19	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-2168894_20	PHROG	phrog_538	minor tail protein	tail
UHGV-2168894_20	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2168894_20	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-2168894_20	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2168894_20	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2168894_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2168894_21	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-2168894_21	eggNOG-mapper	536232.CLM_2045	Phage tail protein	NA
UHGV-2168894_21	COG	COG4722	Phage-related protein YomH	NA
UHGV-2168894_21	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2168894_22	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2168894_22	eggNOG-mapper	1111121.HMPREF1247_0787	nuclear chromosome segregation	NA
UHGV-2168894_22	COG	COG5412	Phage-related protein	NA
UHGV-2168894_22	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-2168894_24	PHROG	phrog_18646	NA	unknown function
UHGV-2168894_24	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-2168894_25	PHROG	phrog_885	major tail protein	tail
UHGV-2168894_25	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-2168894_25	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-2168894_25	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2168894_26	Structural annotation	PF11367	NA	NA
UHGV-2168894_27	PHROG	phrog_17977	NA	unknown function
UHGV-2168894_27	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-2168894_27	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2168894_27	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2168894_29	PHROG	phrog_544	major head protein	head and packaging
UHGV-2168894_29	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-2168894_29	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-2168894_29	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2168894_30	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-2168894_30	Structural annotation	PF06810	NA	NA
UHGV-2168894_31	Structural annotation	PF18152	NA	NA
UHGV-2168894_32	PHROG	phrog_1233	NA	unknown function
UHGV-2168894_32	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-2168894_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2168894_33	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-2168894_33	eggNOG-mapper	1140001.I571_01837	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2168894_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2168894_33	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2168894_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2168894_35	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-2168894_35	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-2168894_35	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-2168894_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2168894_35	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2168894_35	COG	COG2369	NA	NA
UHGV-2168894_35	Structural annotation	PF03496, PF04233, TIGR01641, COG2369	NA	NA
UHGV-2168894_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-2168894_36	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-2168894_36	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2168894_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2168894_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2168894_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2168894_37	PHROG	phrog_10250	NA	unknown function
UHGV-2168894_37	UniRef90	UniRef90_UPI0018AC3323	PBSX family phage terminase large subunit	NA
UHGV-2168894_37	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-2168894_37	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2168894_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2168894_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-2168894_37	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2168894_38	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-2168894_38	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-2168894_38	Structural annotation	PF13542	NA	NA
UHGV-2168894_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2168894_39	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-2168894_39	eggNOG-mapper	1347392.CCEZ01000015_gene2854	NA	NA
UHGV-2168894_39	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2168894_43	PHROG	phrog_7704	NA	unknown function
UHGV-2168894_43	Pfam	PF04448	NA	DUF551
UHGV-2168894_45	PHROG	phrog_3136	NA	unknown function
UHGV-2168894_45	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-2168894_45	eggNOG-mapper	1007096.BAGW01000031_gene120	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-2168894_45	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-2168894_45	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-2168894_46	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2168894_46	UniRef90	UniRef90_R6QWY1	28	NA
UHGV-2168894_48	PHROG	phrog_757	DNA methyltransferase	other
UHGV-2168894_48	UniRef90	UniRef90_UPI00189BA758	DNA cytosine methyltransferase	NA
UHGV-2168894_48	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-2168894_48	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2168894_48	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-2168894_51	PHROG	phrog_9804	NA	unknown function
UHGV-2168894_51	UniRef90	UniRef90_A0A3D1LDS2	Inhibitor_G39P domain-containing protein	NA
UHGV-2168894_51	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-2168894_51	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2168894_51	Structural annotation	PF11417	NA	NA
UHGV-2168894_52	PHROG	phrog_15768	NA	unknown function
UHGV-2168894_52	UniRef90	UniRef90_A0A2V2F720	NA	NA
UHGV-2168894_52	eggNOG-mapper	1123489.AUAN01000006_gene1691	Protein conserved in bacteria	NA
UHGV-2168894_52	AcrCatalog	cluster_38323	NA	NA
UHGV-2168894_52	Pfam	PF19808	NA	DUF6291
UHGV-2168894_52	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2168894_52	Structural annotation	PF19808	NA	NA
UHGV-2168894_53	PHROG	phrog_4973	NA	unknown function
UHGV-2168894_53	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-2168894_53	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-2168894_53	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-2168894_53	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-2168894_54	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2168894_54	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2168894_54	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2168894_54	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-2168894_54	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2168894_55	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2168894_55	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2168894_55	UniRef90	UniRef90_A0A645AIU7	Single-stranded DNA-binding protein	NA
UHGV-2168894_55	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-2168894_55	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2168894_55	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2168894_55	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2168894_55	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2168894_55	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2168894_56	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2168894_56	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2168894_56	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-2168894_56	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-2168894_56	Pfam	PF03837	RecT family	RecT
UHGV-2168894_56	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2168894_56	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2168894_56	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2168894_57	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2168894_57	UniRef90	UniRef90_UPI001D078B74	YqaJ viral recombinase family protein	NA
UHGV-2168894_57	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-2168894_57	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2168894_57	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2168894_57	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2168894_57	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2168894_59	PHROG	phrog_1029	NA	unknown function
UHGV-2168894_59	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-2168894_59	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2168894_60	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2168894_60	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-2168894_60	eggNOG-mapper	552398.HMPREF0866_01626	NA	NA
UHGV-2168894_64	Structural annotation	PF18129, PF08962, MF_00613, NF002745	NA	NA
UHGV-2168894_65	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-2168894_67	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-2168894_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2168894_67	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-2168894_68	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2168894_68	UniRef90	UniRef90_A0A317RX54	Transcriptional regulator with XRE-family HTH domain	NA
UHGV-2168894_68	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-2168894_68	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2168894_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2168894_68	Structural annotation	PF01381, PF08667, NF041951, COG1396	NA	NA
UHGV-2168894_69	Structural annotation	PF09202, MF_01177, TIGR02702, COG1846	NA	NA
UHGV-2168894_72	eggNOG-mapper	633697.EubceDRAFT1_1494	NA	NA
UHGV-2168894_74	KOfam	K14059	int; integrase	NA
UHGV-2168894_74	PHROG	phrog_1	integrase	integration and excision
UHGV-2168894_74	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-2168894_74	eggNOG-mapper	411467.BACCAP_03668	Phage integrase family	NA
UHGV-2168894_74	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2168894_74	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2168894_74	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA