UHGV-2169525

Genome information

vOTU vOTU-020775

Genome length 40,184 bps

CDS count 73

Completeness 89.69% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-2169525
vOTU ID	vOTU-020775
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029886\|Ga0245330_100460
BioSample	SAMEA3449380
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.48
Jumbo phage	No

Genome content
Genome length	40,184 bps
GC content	52.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	91.78%
Average CDS length	510.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2169525_3	PHROG	phrog_1123	NA	unknown function
UHGV-2169525_3	UniRef90	UniRef90_UPI001EDDCAAF	DNA gyrase	NA
UHGV-2169525_3	eggNOG-mapper	411483.FAEPRAA2165_01885	NA	NA
UHGV-2169525_3	Structural annotation	PF04703, MF_01804, TIGR00373, COG1695	NA	NA
UHGV-2169525_4	KOfam	K15352	pipB2; secreted effector protein PipB2	NA
UHGV-2169525_4	PHROG	phrog_9562	NA	unknown function
UHGV-2169525_4	UniRef90	UniRef90_UPI001921C66E	pentapeptide repeat-containing protein	NA
UHGV-2169525_4	eggNOG-mapper	1232443.BAIA02000078_gene49	Pentapeptide repeat protein	NA
UHGV-2169525_4	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-2169525_4	Pfam	PF19062	NA	DUF5758
UHGV-2169525_4	COG	COG1357	NA	NA
UHGV-2169525_4	Structural annotation	PF19062, PF13599, NF011744, COG1357	NA	NA
UHGV-2169525_7	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-2169525_7	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-2169525_10	UniRef90	UniRef90_A0A316T8M7	Transcriptional regulator	NA
UHGV-2169525_10	eggNOG-mapper	929506.CbC4_1187	NA	NA
UHGV-2169525_10	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-2169525_11	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2169525_11	UniRef90	UniRef90_UPI0018AA364F	helix-turn-helix transcriptional regulator	NA
UHGV-2169525_11	eggNOG-mapper	428125.CLOLEP_00924	NA	NA
UHGV-2169525_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2169525_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2169525_11	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-2169525_13	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-2169525_13	PHROG	phrog_10292	NA	unknown function
UHGV-2169525_13	UniRef90	UniRef90_A0A355UYQ5	TM2 domain-containing protein	NA
UHGV-2169525_13	eggNOG-mapper	1514668.JOOA01000002_gene3146	TM2 domain	NA
UHGV-2169525_13	Pfam	PF05154	TM2 domain	TM2
UHGV-2169525_13	COG	COG2314	NA	NA
UHGV-2169525_14	PHROG	phrog_33872	NA	unknown function
UHGV-2169525_14	eggNOG-mapper	445972.ANACOL_01858	NA	NA
UHGV-2169525_15	PHROG	phrog_2384	NA	unknown function
UHGV-2169525_15	UniRef90	UniRef90_G2E734	P63C domain-containing protein	NA
UHGV-2169525_15	eggNOG-mapper	765913.ThidrDRAFT_4097	P63C domain	NA
UHGV-2169525_15	Pfam	PF10546	P63C domain	P63C
UHGV-2169525_15	Structural annotation	PF10546, COG3617	NA	NA
UHGV-2169525_16	KOfam	K14059	int; integrase	NA
UHGV-2169525_16	PHROG	phrog_1	integrase	integration and excision
UHGV-2169525_16	UniRef90	UniRef90_UPI001959BD31	site-specific integrase	NA
UHGV-2169525_16	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-2169525_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2169525_16	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2169525_16	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-2169525_17	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-2169525_17	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-2169525_18	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-2169525_18	Structural annotation	PF12510	NA	NA
UHGV-2169525_19	PHROG	phrog_20016	NA	unknown function
UHGV-2169525_19	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2169525_19	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-2169525_19	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2169525_20	PHROG	phrog_16490	NA	unknown function
UHGV-2169525_20	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-2169525_21	PHROG	phrog_22984	NA	unknown function
UHGV-2169525_22	PHROG	phrog_21718	NA	unknown function
UHGV-2169525_22	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-2169525_23	PHROG	phrog_3754	NA	unknown function
UHGV-2169525_23	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-2169525_25	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-2169525_25	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-2169525_26	PHROG	phrog_4105	NA	unknown function
UHGV-2169525_26	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-2169525_27	PHROG	phrog_1129	holin	lysis
UHGV-2169525_27	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-2169525_27	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2169525_27	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2169525_27	Structural annotation	PF06946	NA	NA
UHGV-2169525_28	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2169525_28	PHROG	phrog_435	endolysin	lysis
UHGV-2169525_28	UniRef90	UniRef90_UPI001967B36E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2169525_28	eggNOG-mapper	1121344.JHZO01000003_gene744	Ami_3	NA
UHGV-2169525_28	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2169525_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2169525_29	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2169525_29	PHROG	phrog_18955	NA	unknown function
UHGV-2169525_29	UniRef90	UniRef90_A0A1C7FQI4	MurNAc-LAA domain-containing protein	NA
UHGV-2169525_29	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-2169525_29	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-2169525_29	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2169525_29	COG	COG3108	NA	NA
UHGV-2169525_29	Structural annotation	PF09992, PF06347, NF040678, COG4632, COG4991	NA	NA
UHGV-2169525_30	PHROG	phrog_2310	NA	unknown function
UHGV-2169525_31	PHROG	phrog_24451	NA	unknown function
UHGV-2169525_31	UniRef90	UniRef90_A0A3P6KYQ0	NA	NA
UHGV-2169525_32	eggNOG-mapper	756499.Desde_1105	NA	NA
UHGV-2169525_32	Structural annotation	PF03426, TIGR04362	NA	NA
UHGV-2169525_33	PHROG	phrog_27545	NA	unknown function
UHGV-2169525_33	UniRef90	UniRef90_C6LG78	Carbohydrate binding domain protein	NA
UHGV-2169525_33	eggNOG-mapper	742738.HMPREF9460_00363	NA	NA
UHGV-2169525_34	eggNOG-mapper	1226322.HMPREF1545_02881	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2169525_34	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2169525_35	PHROG	phrog_13589	NA	unknown function
UHGV-2169525_35	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-2169525_35	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-2169525_36	UniRef90	UniRef90_UPI001C1090AB	collagen-like protein	NA
UHGV-2169525_36	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-2169525_36	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2169525_36	Structural annotation	PF10651, COG5456	NA	NA
UHGV-2169525_38	PHROG	phrog_32744	NA	unknown function
UHGV-2169525_38	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-2169525_38	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-2169525_39	PHROG	phrog_1194	NA	unknown function
UHGV-2169525_39	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-2169525_39	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2169525_41	PHROG	phrog_23464	NA	unknown function
UHGV-2169525_41	eggNOG-mapper	1226322.HMPREF1545_00124	Phage tail tape measure protein TP901	NA
UHGV-2169525_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2169525_42	PHROG	phrog_706	NA	unknown function
UHGV-2169525_42	UniRef90	UniRef90_A0A1C6B556	Bacteriophage Gp15 protein	NA
UHGV-2169525_42	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-2169525_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2169525_42	Structural annotation	PF06854	NA	NA
UHGV-2169525_43	Structural annotation	PF20378	NA	NA
UHGV-2169525_44	PHROG	phrog_820	major tail protein	tail
UHGV-2169525_44	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-2169525_44	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-2169525_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2169525_45	PHROG	phrog_3266	tail completion	connector
UHGV-2169525_45	Structural annotation	PF12691	NA	NA
UHGV-2169525_46	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2169525_46	UniRef90	UniRef90_UPI001C3B04D8	Minor capsid protein	NA
UHGV-2169525_46	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-2169525_46	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2169525_46	Structural annotation	PF11114	NA	NA
UHGV-2169525_47	PHROG	phrog_3366	NA	unknown function
UHGV-2169525_47	Pfam	PF20536	NA	DUF6751
UHGV-2169525_47	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2169525_48	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2169525_48	UniRef90	UniRef90_A0A345MKD1	Putative head-tail connector protein	NA
UHGV-2169525_49	PHROG	phrog_544	major head protein	head and packaging
UHGV-2169525_49	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-2169525_49	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-2169525_49	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2169525_49	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2169525_50	UniRef90	UniRef90_A0A1C6B5I1	Phage minor structural protein GP20	NA
UHGV-2169525_50	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2169525_50	Structural annotation	PF06810	NA	NA
UHGV-2169525_51	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2169525_51	UniRef90	UniRef90_A0A1C6B625	Phage minor capsid protein 2	NA
UHGV-2169525_51	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-2169525_51	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2169525_51	COG	COG2369	NA	NA
UHGV-2169525_51	Structural annotation	PF06152	NA	NA
UHGV-2169525_52	PHROG	phrog_533	portal protein	head and packaging
UHGV-2169525_52	UniRef90	UniRef90_A0A136WBU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2169525_52	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-2169525_52	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2169525_53	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2169525_53	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2169525_53	UniRef90	UniRef90_A0A1C6J947	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-2169525_53	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-2169525_53	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2169525_53	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2169525_53	COG	COG1783	Phage terminase large subunit	NA
UHGV-2169525_53	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2169525_54	UniRef90	UniRef90_UPI0018AC41F1	helix-turn-helix domain-containing protein	NA
UHGV-2169525_54	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-2169525_54	Structural annotation	PF13542	NA	NA
UHGV-2169525_55	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2169525_55	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2169525_55	UniRef90	UniRef90_A0A7G5MXK6	Bro-N domain-containing protein	NA
UHGV-2169525_55	eggNOG-mapper	33035.JPJF01000057_gene3118	BRO family, N-terminal domain	NA
UHGV-2169525_55	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2169525_55	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2169525_55	COG	COG3617	Prophage antirepressor	NA
UHGV-2169525_55	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-2169525_57	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-2169525_57	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-2169525_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2169525_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2169525_57	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2169525_58	UniRef90	UniRef90_A0A4Y3TFR4	HTH cro/C1-type domain-containing protein	NA
UHGV-2169525_58	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-2169525_60	PHROG	phrog_8684	NA	unknown function
UHGV-2169525_60	UniRef90	UniRef90_UPI001D00D0A2	YopX family protein	NA
UHGV-2169525_60	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-2169525_60	Pfam	PF09643	YopX protein	YopX
UHGV-2169525_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2169525_60	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2169525_62	PHROG	phrog_2081	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2169525_63	PHROG	phrog_22543	NA	unknown function
UHGV-2169525_65	PHROG	phrog_38832	NA	unknown function
UHGV-2169525_65	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-2169525_69	PHROG	phrog_25732	NA	unknown function
UHGV-2169525_71	PHROG	phrog_10714	NA	unknown function
UHGV-2169525_71	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-2169525_71	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-2169525_71	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2