UHGV-2170494

Genome information

Genome length 66,336 bps

CDS count 80

Completeness 99.90% (high-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-2170494
vOTU ID	vOTU-014662
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029849\|Ga0245286_100037\|provirus_57933_124268
BioSample	SAMEA3449337
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.43
Jumbo phage	No

Genome content
Genome length	66,336 bps
GC content	42.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	91.58%
Average CDS length	763.31 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2170494_1	UniRef90	UniRef90_A0A0I9RJH8	Transcriptional regulator	NA
UHGV-2170494_1	eggNOG-mapper	272559.BF9343_2317	NA	NA
UHGV-2170494_2	Structural annotation	PF08587	NA	NA
UHGV-2170494_6	eggNOG-mapper	411901.BACCAC_01212	NA	NA
UHGV-2170494_7	PHROG	phrog_14913	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2170494_7	UniRef90	UniRef90_UPI0018987AD2	HNH endonuclease	NA
UHGV-2170494_7	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2170494_7	Structural annotation	PF13392, COG4338	NA	NA
UHGV-2170494_8	PHROG	phrog_3657	NA	unknown function
UHGV-2170494_8	eggNOG-mapper	1211813.CAPH01000015_gene728	NA	NA
UHGV-2170494_8	Structural annotation	PF04404	NA	NA
UHGV-2170494_9	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-2170494_9	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-2170494_9	UniRef90	UniRef90_A0A3L7ZFX8	NA	NA
UHGV-2170494_9	eggNOG-mapper	1321820.HMPREF1983_00508	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-2170494_9	PADLOC	SspH_00002	SspH	SSP
UHGV-2170494_9	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-2170494_9	Pfam	PF17854	FtsK alpha domain	FtsK_alpha
UHGV-2170494_9	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-2170494_9	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-2170494_9	Structural annotation	PF17854, PF12684, PF01580, MF_03030, MF_00350, NF041214, TIGR01896, COG1674	NA	NA
UHGV-2170494_11	PHROG	phrog_12688	NA	unknown function
UHGV-2170494_11	eggNOG-mapper	1347393.HG726021_gene516	NA	NA
UHGV-2170494_11	Structural annotation	PF10382, TIGR02276	NA	NA
UHGV-2170494_12	PHROG	phrog_11501	NA	unknown function
UHGV-2170494_12	UniRef90	UniRef90_F3QQV3	Conserved domain protein	NA
UHGV-2170494_12	eggNOG-mapper	1347393.HG726021_gene515	NA	NA
UHGV-2170494_12	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2170494_13	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2170494_13	eggNOG-mapper	457424.BFAG_02412	NA	NA
UHGV-2170494_14	UniRef90	UniRef90_A0A7K0H746	Acetyltransferase	NA
UHGV-2170494_14	eggNOG-mapper	1123008.KB905702_gene2315	NA	NA
UHGV-2170494_15	eggNOG-mapper	435591.BDI_0859	DnaD domain protein	NA
UHGV-2170494_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2170494_16	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2170494_16	PHROG	phrog_1035	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-2170494_16	UniRef90	UniRef90_A0A6N3ES59	HNH endonuclease	NA
UHGV-2170494_16	eggNOG-mapper	357276.EL88_08545	HNH endonuclease	NA
UHGV-2170494_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2170494_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2170494_17	PHROG	phrog_16706	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-2170494_17	UniRef90	UniRef90_D0TA51	NA	NA
UHGV-2170494_17	eggNOG-mapper	435590.BVU_2853	NA	NA
UHGV-2170494_17	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2170494_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2170494_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2170494_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2170494_18	UniRef90	UniRef90_D0TA50	ATPase_AAA_core domain-containing protein	NA
UHGV-2170494_18	eggNOG-mapper	411901.BACCAC_01187	DNA-dependent DNA replication	NA
UHGV-2170494_18	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-2170494_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2170494_18	Structural annotation	PF00308, MF_01919, NF005931, COG1484	NA	NA
UHGV-2170494_20	PHROG	phrog_8446	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2170494_20	UniRef90	UniRef90_A0A6B9L6P3	HNH endonuclease	NA
UHGV-2170494_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2170494_21	PHROG	phrog_363	DNA methyltransferase	other
UHGV-2170494_21	UniRef90	UniRef90_K5CJI9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2170494_21	eggNOG-mapper	445970.ALIPUT_00030	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2170494_21	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2170494_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2170494_21	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2170494_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2170494_21	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2170494_22	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2170494_22	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2170494_22	UniRef90	UniRef90_A6LAB7	Methyltransferase	NA
UHGV-2170494_22	eggNOG-mapper	435591.BDI_0862	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2170494_22	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-2170494_22	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2170494_22	COG	COG0338	DNA-adenine methylase	NA
UHGV-2170494_22	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-2170494_24	PHROG	phrog_20807	NA	unknown function
UHGV-2170494_24	Structural annotation	PF00684, TIGR00663, COG0592	NA	NA
UHGV-2170494_25	PHROG	phrog_20542	NA	unknown function
UHGV-2170494_25	eggNOG-mapper	216591.BCAM1034	NA	NA
UHGV-2170494_27	PHROG	phrog_37478	NA	unknown function
UHGV-2170494_28	PHROG	phrog_874	NA	unknown function
UHGV-2170494_28	eggNOG-mapper	1122973.KB904232_gene340	NA	NA
UHGV-2170494_28	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2170494_30	PHROG	phrog_28300	NA	unknown function
UHGV-2170494_30	eggNOG-mapper	483215.BACFIN_06266	NA	NA
UHGV-2170494_33	PHROG	phrog_9236	pyrophosphatase	other
UHGV-2170494_33	eggNOG-mapper	657309.BXY_08510	NA	NA
UHGV-2170494_33	Structural annotation	PF08761, COG4508	NA	NA
UHGV-2170494_34	UniRef90	UniRef90_A0A496CXC5	NA	NA
UHGV-2170494_34	eggNOG-mapper	742727.HMPREF9447_04873	NA	NA
UHGV-2170494_34	Pfam	PF04448	NA	DUF551
UHGV-2170494_34	Structural annotation	PF04448	NA	NA
UHGV-2170494_38	PHROG	phrog_32516	NA	unknown function
UHGV-2170494_38	eggNOG-mapper	1121098.HMPREF1534_01101	NA	NA
UHGV-2170494_38	Structural annotation	PF11134, COG3292	NA	NA
UHGV-2170494_43	PHROG	phrog_156	portal protein	head and packaging
UHGV-2170494_43	eggNOG-mapper	679191.HMPREF9018_0455	NA	NA
UHGV-2170494_43	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2170494_46	UniRef90	UniRef90_A0A8D9PFB4	Peptidase M76 family	NA
UHGV-2170494_46	eggNOG-mapper	742725.HMPREF9450_02112	NA	NA
UHGV-2170494_48	PHROG	phrog_38431	NA	unknown function
UHGV-2170494_48	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-2170494_48	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-2170494_50	PHROG	phrog_28898	NA	unknown function
UHGV-2170494_50	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-2170494_50	Structural annotation	PF10781	NA	NA
UHGV-2170494_51	PHROG	phrog_31654	NA	unknown function
UHGV-2170494_51	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-2170494_52	PHROG	phrog_16490	NA	unknown function
UHGV-2170494_52	UniRef90	UniRef90_A0A8F1B6F8	Outer capsid protein/viral fiber	NA
UHGV-2170494_52	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-2170494_53	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-2170494_53	Structural annotation	PF08299, NF004688	NA	NA
UHGV-2170494_54	PHROG	phrog_26448	NA	unknown function
UHGV-2170494_54	eggNOG-mapper	1235803.C825_05324	NA	NA
UHGV-2170494_54	Pfam	PF20647	NA	DUF6808
UHGV-2170494_54	Structural annotation	PF20647	NA	NA
UHGV-2170494_55	PHROG	phrog_32732	NA	unknown function
UHGV-2170494_55	UniRef90	UniRef90_R6YL95	Conserved domain protein	NA
UHGV-2170494_55	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-2170494_55	dbAPIS	APIS052	NA	NA
UHGV-2170494_55	Structural annotation	PF10458	NA	NA
UHGV-2170494_56	PHROG	phrog_873	endolysin	head and packaging
UHGV-2170494_56	UniRef90	UniRef90_UPI001896C993	structural protein P5	NA
UHGV-2170494_56	eggNOG-mapper	1235803.C825_05325	NA	NA
UHGV-2170494_57	PHROG	phrog_15037	NA	unknown function
UHGV-2170494_57	UniRef90	UniRef90_UPI0015E74944	phage holin family protein	NA
UHGV-2170494_57	eggNOG-mapper	742766.HMPREF9455_03105	NA	NA
UHGV-2170494_57	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2170494_61	PHROG	phrog_20787	virion structural protein	head and packaging
UHGV-2170494_62	UniRef90	UniRef90_UPI001BDF6171	right-handed parallel beta-helix repeat-containing protein	NA
UHGV-2170494_62	eggNOG-mapper	143224.JQMD01000002_gene2562	NA	NA
UHGV-2170494_63	PHROG	phrog_22135	NA	unknown function
UHGV-2170494_63	Structural annotation	PF17212	NA	NA
UHGV-2170494_65	PHROG	phrog_26635	NA	unknown function
UHGV-2170494_65	UniRef90	UniRef90_R7DGV7	BIG2 domain-containing protein	NA
UHGV-2170494_65	eggNOG-mapper	742817.HMPREF9449_01785	NA	NA
UHGV-2170494_65	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-2170494_66	PHROG	phrog_22323	NA	unknown function
UHGV-2170494_66	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-2170494_68	UniRef90	UniRef90_A0A173VHX4	Rhomboid domain-containing protein	NA
UHGV-2170494_68	Pfam	PF01694	Rhomboid family	Rhomboid
UHGV-2170494_68	Structural annotation	PF01694, MF_01594, TIGR04239, COG0705	NA	NA
UHGV-2170494_69	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2170494_69	UniRef90	UniRef90_UPI0013E9F59E	terminase	NA
UHGV-2170494_69	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-2170494_69	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-2170494_69	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2170494_71	KOfam	K06985	K06985; aspartyl protease family protein	NA
UHGV-2170494_71	UniRef90	UniRef90_UPI000F62CB4B	retroviral-like aspartic protease family protein	NA
UHGV-2170494_71	eggNOG-mapper	1002367.HMPREF0673_00126	Clan AA aspartic protease	NA
UHGV-2170494_71	Pfam	PF13975	gag-polyprotein putative aspartyl protease	gag-asp_proteas
UHGV-2170494_71	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-2170494_72	PHROG	phrog_14770	NA	unknown function
UHGV-2170494_72	eggNOG-mapper	1347393.HG726020_gene1834	CRISPR-associated helicase, Cas3	NA
UHGV-2170494_72	Pfam	PF18823	Inorganic Pyrophosphatase	InPase
UHGV-2170494_72	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-2170494_72	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-2170494_72	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-2170494_74	eggNOG-mapper	1347393.HG726020_gene1836	NA	NA
UHGV-2170494_78	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-2170494_78	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2170494_78	UniRef90	UniRef90_UPI000EBB33E5	helix-turn-helix domain-containing protein	NA
UHGV-2170494_78	eggNOG-mapper	679937.Bcop_2150	Helix-turn-helix domain	NA
UHGV-2170494_78	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2170494_78	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2170494_78	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2170494_78	Structural annotation	PF01381, NF041677, COG1396	NA	NA
UHGV-2170494_79	eggNOG-mapper	1121129.KB903373_gene447	NA	NA
UHGV-2170494_80	KOfam	K14059	int; integrase	NA
UHGV-2170494_80	PHROG	phrog_1	integrase	integration and excision
UHGV-2170494_80	UniRef90	UniRef90_A0A4S2EE86	Site-specific integrase	NA
UHGV-2170494_80	eggNOG-mapper	657309.BXY_05090	Phage integrase family	NA
UHGV-2170494_80	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2170494_80	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2170494_80	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2170494_80	Structural annotation	PF00589, PF13102, MF_02055, TIGR02224, COG4973	NA	NA