UHGV-2170496

Genome information

Genome length 33,847 bps

CDS count 54

Completeness 97.94% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-2170496
vOTU ID	vOTU-014663
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029849\|Ga0245286_100084\|provirus_13518_47364
BioSample	SAMEA3449337
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.94% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.59
Jumbo phage	No

Genome content
Genome length	33,847 bps
GC content	41.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	89.71%
Average CDS length	566.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2170496_1	UniRef90	UniRef90_A0A6L8RZT9	TetR/AcrR family transcriptional regulator	NA
UHGV-2170496_1	eggNOG-mapper	471875.RUMLAC_02592	tetR family	NA
UHGV-2170496_1	COG	COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	NA
UHGV-2170496_2	KOfam	K02051	ABC.SN.S; NitT/TauT family transport system substrate-binding protein	NA
UHGV-2170496_2	UniRef90	UniRef90_UPI001570A6DA	ABC transporter substrate-binding protein	NA
UHGV-2170496_2	eggNOG-mapper	411462.DORLON_01446	COG COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components	NA
UHGV-2170496_2	Pfam	PF09084	NMT1/THI5 like	NMT1
UHGV-2170496_2	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA
UHGV-2170496_3	PHROG	phrog_7854	endolysin	lysis
UHGV-2170496_3	UniRef90	UniRef90_A6BEP4	Putative N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2170496_3	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2170496_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2170496_3	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-2170496_3	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-2170496_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2170496_3	Structural annotation	PF01520, TIGR02883, COG0860, COG5263	NA	NA
UHGV-2170496_4	PHROG	phrog_443	holin	lysis
UHGV-2170496_4	UniRef90	UniRef90_UPI001F16E4E6	holin	NA
UHGV-2170496_4	eggNOG-mapper	411462.DORLON_00825	Putative lactococcus lactis phage r1t holin	NA
UHGV-2170496_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2170496_4	Structural annotation	PF16945	NA	NA
UHGV-2170496_5	PHROG	phrog_1863	NA	unknown function
UHGV-2170496_5	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2170496_6	eggNOG-mapper	457412.RSAG_04673	NA	NA
UHGV-2170496_8	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2170496_8	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2170496_8	UniRef90	UniRef90_F7K002	Reverse transcriptase domain-containing protein	NA
UHGV-2170496_8	eggNOG-mapper	1235802.C823_04721	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2170496_8	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2170496_8	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2170496_8	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2170496_8	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-2170496_9	UniRef90	UniRef90_A0A173SBN1	S23 ribosomal protein	NA
UHGV-2170496_9	eggNOG-mapper	658655.HMPREF0988_00872	NA	NA
UHGV-2170496_9	Structural annotation	PF05635, NF033474, COG3308	NA	NA
UHGV-2170496_10	PHROG	phrog_16164	NA	unknown function
UHGV-2170496_10	UniRef90	UniRef90_UPI0019156A7A	NA	NA
UHGV-2170496_10	eggNOG-mapper	1203606.HMPREF1526_01924	NA	NA
UHGV-2170496_10	Pfam	PF19789	NA	DUF6273
UHGV-2170496_10	Structural annotation	PF10651	NA	NA
UHGV-2170496_11	eggNOG-mapper	1280698.AUJS01000007_gene1053	NA	NA
UHGV-2170496_12	PHROG	phrog_12931	NA	unknown function
UHGV-2170496_12	eggNOG-mapper	1280698.AUJS01000007_gene1052	NA	NA
UHGV-2170496_13	PHROG	phrog_25635	NA	unknown function
UHGV-2170496_13	eggNOG-mapper	411462.DORLON_00774	NA	NA
UHGV-2170496_13	Structural annotation	PF18573, PF20747, NF033147	NA	NA
UHGV-2170496_14	PHROG	phrog_538	minor tail protein	tail
UHGV-2170496_14	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2170496_14	eggNOG-mapper	1280698.AUJS01000007_gene1049	NA	NA
UHGV-2170496_14	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2170496_14	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2170496_15	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2170496_15	UniRef90	UniRef90_A0A174L0T5	Phage-related protein	NA
UHGV-2170496_15	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-2170496_15	COG	COG1511	NA	NA
UHGV-2170496_15	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-2170496_16	PHROG	phrog_1633	NA	unknown function
UHGV-2170496_16	UniRef90	UniRef90_UPI00157064A0	NA	NA
UHGV-2170496_16	eggNOG-mapper	1280698.AUJS01000007_gene1046	NA	NA
UHGV-2170496_16	Pfam	PF17318	NA	DUF5361
UHGV-2170496_16	Structural annotation	PF17318	NA	NA
UHGV-2170496_17	PHROG	phrog_1526	NA	unknown function
UHGV-2170496_17	UniRef90	UniRef90_A0A1Q8EF45	NA	NA
UHGV-2170496_17	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-2170496_18	PHROG	phrog_117	major tail protein	tail
UHGV-2170496_18	UniRef90	UniRef90_UPI001F18A06D	phage tail protein	NA
UHGV-2170496_18	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-2170496_18	COG	COG5492	NA	NA
UHGV-2170496_18	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2170496_19	PHROG	phrog_123	tail terminator	connector
UHGV-2170496_19	UniRef90	UniRef90_A0A2A5RIK6	NA	NA
UHGV-2170496_19	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-2170496_19	Structural annotation	PF06141	NA	NA
UHGV-2170496_20	PHROG	phrog_387	neck protein	connector
UHGV-2170496_20	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-2170496_21	PHROG	phrog_501	head closure Hc1	connector
UHGV-2170496_21	UniRef90	UniRef90_Q7Y4I1	Gp43	NA
UHGV-2170496_21	eggNOG-mapper	1280698.AUJS01000007_gene1041	NA	NA
UHGV-2170496_21	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2170496_22	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2170496_22	UniRef90	UniRef90_A0A1C5Y9F2	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2170496_22	eggNOG-mapper	1280698.AUJS01000007_gene1040	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2170496_22	Pfam	PF09355	NA	Phage_Gp19
UHGV-2170496_22	Structural annotation	PF09355	NA	NA
UHGV-2170496_23	PHROG	phrog_36603	NA	unknown function
UHGV-2170496_24	PHROG	phrog_32396	NA	unknown function
UHGV-2170496_24	UniRef90	UniRef90_UPI001961D35B	phage major capsid protein	NA
UHGV-2170496_24	eggNOG-mapper	1280698.AUJS01000007_gene1038	Phage capsid family	NA
UHGV-2170496_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2170496_25	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-2170496_25	UniRef90	UniRef90_A0A2S0L5H5	Phage scaffold protein	NA
UHGV-2170496_25	eggNOG-mapper	1280698.AUJS01000007_gene1037	NA	NA
UHGV-2170496_25	Pfam	PF14265	NA	DUF4355
UHGV-2170496_25	Structural annotation	PF14265	NA	NA
UHGV-2170496_26	PHROG	phrog_17688	NA	unknown function
UHGV-2170496_26	UniRef90	UniRef90_R6SFU1	Putative phage terminase large subunit	NA
UHGV-2170496_26	eggNOG-mapper	1280698.AUJS01000007_gene1036	phage terminase, large subunit	NA
UHGV-2170496_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2170496_26	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-2170496_27	PHROG	phrog_1865	NA	unknown function
UHGV-2170496_27	Structural annotation	PF07073, MF_00436, NF008636, COG4568	NA	NA
UHGV-2170496_28	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-2170496_28	UniRef90	UniRef90_UPI00156EC2C0	polymorphic toxin type 50 domain-containing protein	NA
UHGV-2170496_28	eggNOG-mapper	1280698.AUJS01000007_gene1034	cell adhesion	NA
UHGV-2170496_28	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-2170496_28	COG	COG2369	NA	NA
UHGV-2170496_28	Structural annotation	PF15542	NA	NA
UHGV-2170496_29	PHROG	phrog_104	portal protein	head and packaging
UHGV-2170496_29	UniRef90	UniRef90_UPI001A9C29A4	phage portal protein	NA
UHGV-2170496_29	eggNOG-mapper	1280698.AUJS01000007_gene1033	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2170496_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2170496_30	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2170496_30	UniRef90	UniRef90_UPI0015708A7C	HNH endonuclease	NA
UHGV-2170496_30	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-2170496_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2170496_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2170496_30	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2170496_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2170496_31	UniRef90	UniRef90_A0A416MN03	Sigma70_r4 domain-containing protein	NA
UHGV-2170496_31	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-2170496_31	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-2170496_32	PHROG	phrog_26445	NA	unknown function
UHGV-2170496_32	eggNOG-mapper	97139.C824_00034	NA	NA
UHGV-2170496_32	Structural annotation	PF21220, COG2771	NA	NA
UHGV-2170496_35	PHROG	phrog_24386	NA	unknown function
UHGV-2170496_35	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-2170496_35	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-2170496_37	Structural annotation	PF10400	NA	NA
UHGV-2170496_38	PHROG	phrog_7566	NA	unknown function
UHGV-2170496_38	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-2170496_39	PHROG	phrog_15077	NA	unknown function
UHGV-2170496_39	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-2170496_39	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-2170496_39	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2170496_40	PHROG	phrog_8470	NA	unknown function
UHGV-2170496_40	UniRef90	UniRef90_UPI001D0719D3	PcfJ domain-containing protein	NA
UHGV-2170496_40	eggNOG-mapper	742740.HMPREF9474_03121	PcfJ-like protein	NA
UHGV-2170496_40	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2170496_40	Structural annotation	PF14284	NA	NA
UHGV-2170496_41	UniRef90	UniRef90_UPI0003F6328F	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2170496_41	eggNOG-mapper	999413.HMPREF1094_04704	NA	NA
UHGV-2170496_41	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-2170496_42	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2170496_42	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2170496_42	UniRef90	UniRef90_A0A173RBQ5	Ribonuclease H	NA
UHGV-2170496_42	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-2170496_42	Pfam	PF00075	RNase H	RNase_H
UHGV-2170496_42	COG	COG0328	Ribonuclease HI	NA
UHGV-2170496_42	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2170496_44	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2170496_44	eggNOG-mapper	411461.DORFOR_01138	NA	NA
UHGV-2170496_44	Structural annotation	PF01446	NA	NA
UHGV-2170496_50	PHROG	phrog_28456	NA	unknown function
UHGV-2170496_51	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2170496_51	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2170496_51	UniRef90	UniRef90_UPI0003FEB08A	helix-turn-helix domain-containing protein	NA
UHGV-2170496_51	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-2170496_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2170496_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2170496_51	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2170496_53	PHROG	phrog_7115	NA	unknown function
UHGV-2170496_53	UniRef90	UniRef90_A0A396KU40	PH domain-containing protein	NA
UHGV-2170496_53	eggNOG-mapper	1280698.AUJS01000007_gene1000	Bacterial PH domain	NA
UHGV-2170496_53	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-2170496_54	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2170496_54	PHROG	phrog_95	integrase	integration and excision
UHGV-2170496_54	UniRef90	UniRef90_UPI00156F85ED	recombinase family protein	NA
UHGV-2170496_54	eggNOG-mapper	411461.DORFOR_00037	Resolvase, N terminal domain	NA
UHGV-2170496_54	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2170496_54	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2170496_54	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2170496_54	Structural annotation	PF00239, NF041201, COG1961	NA	NA