UHGV-2170618

Genome information

vOTU vOTU-071958

Genome length 61,160 bps

CDS count 101

Completeness 96.97% (high-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-2170618
vOTU ID	vOTU-071958
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300030031\|Ga0245030_100089\|provirus_52919_114078
BioSample	SAMEA3708874
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.36
Jumbo phage	No

Genome content
Genome length	61,160 bps
GC content	38.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	101
CDS density	88.18%
Average CDS length	539.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2170618_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2170618_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2170618_1	UniRef90	UniRef90_B0NM83	Site-specific recombinase, phage integrase family	NA
UHGV-2170618_1	eggNOG-mapper	449673.BACSTE_00585	Phage integrase SAM-like domain	NA
UHGV-2170618_1	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-2170618_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2170618_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2170618_1	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2170618_2	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2170618_2	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2170618_2	UniRef90	UniRef90_B0NM82	Terminase small subunit	NA
UHGV-2170618_2	eggNOG-mapper	449673.BACSTE_00584	Terminase small subunit	NA
UHGV-2170618_2	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2170618_2	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2170618_2	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2170618_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2170618_3	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2170618_3	UniRef90	UniRef90_A0A374UTI3	PBSX family phage terminase large subunit	NA
UHGV-2170618_3	eggNOG-mapper	1122971.BAME01000163_gene6625	Phage terminase large subunit	NA
UHGV-2170618_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2170618_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2170618_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-2170618_3	Structural annotation	PF04466, PF17289, MF_04145, MF_00034, TIGR01547, TIGR01630, COG1783, COG5362	NA	NA
UHGV-2170618_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-2170618_4	UniRef90	UniRef90_UPI000E54D807	phage portal protein	NA
UHGV-2170618_4	eggNOG-mapper	435590.BVU_2835	Phage portal protein	NA
UHGV-2170618_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2170618_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2170618_5	KOfam	K06904	NA	NA
UHGV-2170618_5	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2170618_5	UniRef90	UniRef90_A0A374UTG7	Phage prohead protein	NA
UHGV-2170618_5	eggNOG-mapper	1122971.BAME01000143_gene6476	Phage prohead protease, HK97 family	NA
UHGV-2170618_5	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2170618_5	COG	COG3740	Phage head maturation protease	NA
UHGV-2170618_5	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2170618_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-2170618_6	UniRef90	UniRef90_UPI000E4AD180	phage major capsid protein	NA
UHGV-2170618_6	eggNOG-mapper	1122971.BAME01000143_gene6477	Phage capsid family	NA
UHGV-2170618_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2170618_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2170618_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2170618_7	PHROG	phrog_26639	NA	unknown function
UHGV-2170618_7	eggNOG-mapper	1122971.BAME01000143_gene6480	NA	NA
UHGV-2170618_7	Structural annotation	PF20459	NA	NA
UHGV-2170618_8	PHROG	phrog_23418	NA	unknown function
UHGV-2170618_8	eggNOG-mapper	1122971.BAME01000143_gene6481	NA	NA
UHGV-2170618_8	Structural annotation	PF08873	NA	NA
UHGV-2170618_9	PHROG	phrog_24272	NA	unknown function
UHGV-2170618_9	eggNOG-mapper	449673.BACSTE_00576	NA	NA
UHGV-2170618_9	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-2170618_11	PHROG	phrog_6195	tail protein	tail
UHGV-2170618_11	UniRef90	UniRef90_A0A374UT65	ABC transporter	NA
UHGV-2170618_11	eggNOG-mapper	449673.BACSTE_00574	NA	NA
UHGV-2170618_12	PHROG	phrog_26299	NA	unknown function
UHGV-2170618_12	eggNOG-mapper	411476.BACOVA_03935	NA	NA
UHGV-2170618_14	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2170618_14	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2170618_14	UniRef90	UniRef90_B0NM69	Phage regulatory protein, Rha family	NA
UHGV-2170618_14	eggNOG-mapper	449673.BACSTE_00571	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-2170618_14	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2170618_14	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-2170618_15	PHROG	phrog_10324	anti-repressor Ant	transcription regulation
UHGV-2170618_15	UniRef90	UniRef90_UPI001EE8E1B7	Rha family transcriptional regulator	NA
UHGV-2170618_15	eggNOG-mapper	449673.BACSTE_00571	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-2170618_15	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2170618_15	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2170618_15	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-2170618_16	UniRef90	UniRef90_E5V9B2	Toxin-antitoxin system protein	NA
UHGV-2170618_16	eggNOG-mapper	449673.BACSTE_00569	NA	NA
UHGV-2170618_16	Structural annotation	PF07878, NF041793, COG4877	NA	NA
UHGV-2170618_17	PHROG	phrog_14333	NA	unknown function
UHGV-2170618_17	UniRef90	UniRef90_A0A6I0K303	NA	NA
UHGV-2170618_17	eggNOG-mapper	449673.BACSTE_00568	NA	NA
UHGV-2170618_17	Pfam	PF13711	NA	DUF4160
UHGV-2170618_17	Structural annotation	PF13711	NA	NA
UHGV-2170618_18	PHROG	phrog_37898	NA	unknown function
UHGV-2170618_18	UniRef90	UniRef90_UPI001556B5CC	NA	NA
UHGV-2170618_18	eggNOG-mapper	449673.BACSTE_00567	NA	NA
UHGV-2170618_18	Pfam	PF10387	NA	DUF2442
UHGV-2170618_18	Structural annotation	PF10387, COG3536	NA	NA
UHGV-2170618_19	PHROG	phrog_4002	NA	unknown function
UHGV-2170618_19	UniRef90	UniRef90_B0NMA8	NA	NA
UHGV-2170618_19	eggNOG-mapper	449673.BACSTE_00566	NA	NA
UHGV-2170618_19	Pfam	PF14730	NA	DUF4468
UHGV-2170618_19	Structural annotation	PF14730	NA	NA
UHGV-2170618_20	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-2170618_20	PHROG	phrog_26705	NA	unknown function
UHGV-2170618_20	UniRef90	UniRef90_A0A414Q7X1	Phage tail tape measure protein	NA
UHGV-2170618_20	eggNOG-mapper	1122971.BAME01000119_gene6173	Phage-related minor tail protein	NA
UHGV-2170618_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2170618_21	PHROG	phrog_26233	NA	unknown function
UHGV-2170618_21	eggNOG-mapper	411476.BACOVA_03937	NA	NA
UHGV-2170618_22	PHROG	phrog_22157	NA	unknown function
UHGV-2170618_22	eggNOG-mapper	411476.BACOVA_03941	NA	NA
UHGV-2170618_22	Structural annotation	PF05629, PF17642, PF06605, TIGR01646, COG3157	NA	NA
UHGV-2170618_23	PHROG	phrog_26568	NA	unknown function
UHGV-2170618_23	eggNOG-mapper	1122971.BAME01000119_gene6178	NA	NA
UHGV-2170618_23	Structural annotation	PF02927, PF19266	NA	NA
UHGV-2170618_24	PHROG	phrog_38044	NA	unknown function
UHGV-2170618_24	UniRef90	UniRef90_UPI001E5F740B	NA	NA
UHGV-2170618_24	eggNOG-mapper	1236514.BAKL01000085_gene4861	NA	NA
UHGV-2170618_25	eggNOG-mapper	742727.HMPREF9447_04856	NA	NA
UHGV-2170618_26	eggNOG-mapper	693979.Bache_2416	nuclear chromosome segregation	NA
UHGV-2170618_26	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2170618_28	eggNOG-mapper	272559.BF9343_2359	NA	NA
UHGV-2170618_28	Pfam	PF10326	Serpentine type 7TM GPCR chemoreceptor Str	7TM_GPCR_Str
UHGV-2170618_29	UniRef90	UniRef90_UPI000E53ECB8	phage holin family protein	NA
UHGV-2170618_29	eggNOG-mapper	1121100.JCM6294_559	NA	NA
UHGV-2170618_29	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2170618_29	Structural annotation	PF05105, NF035928, COG4824	NA	NA
UHGV-2170618_31	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2170618_31	PHROG	phrog_435	endolysin	lysis
UHGV-2170618_31	UniRef90	UniRef90_UPI0018997145	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2170618_31	eggNOG-mapper	657309.BXY_08040	COG NOG32858 non supervised orthologous group	NA
UHGV-2170618_31	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2170618_31	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2170618_31	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-2170618_32	Structural annotation	PF14607, MF_01372, NF038393	NA	NA
UHGV-2170618_34	eggNOG-mapper	762984.HMPREF9445_00185	Leucine-rich repeat (LRR) protein	NA
UHGV-2170618_34	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-2170618_34	Structural annotation	PF21644, NF008992	NA	NA
UHGV-2170618_36	PHROG	phrog_26448	NA	unknown function
UHGV-2170618_36	eggNOG-mapper	762984.HMPREF9445_00190	NA	NA
UHGV-2170618_36	Pfam	PF20647	NA	DUF6808
UHGV-2170618_36	Structural annotation	PF20647	NA	NA
UHGV-2170618_37	Structural annotation	PF08299, NF004688	NA	NA
UHGV-2170618_40	Structural annotation	PF10628	NA	NA
UHGV-2170618_43	UniRef90	UniRef90_UPI0018A04156	phage antirepressor KilAC domain-containing protein	NA
UHGV-2170618_43	eggNOG-mapper	411901.BACCAC_01209	BRO family, N-terminal domain	NA
UHGV-2170618_43	COG	COG3617	Prophage antirepressor	NA
UHGV-2170618_43	Structural annotation	PF08346, COG3561	NA	NA
UHGV-2170618_45	UniRef90	UniRef90_A0A415IS58	LacI family DNA-binding transcriptional regulator	NA
UHGV-2170618_45	Structural annotation	PF13384, TIGR04381	NA	NA
UHGV-2170618_46	Structural annotation	PF02699, MF_01354, NF005100, COG5475	NA	NA
UHGV-2170618_48	Structural annotation	PF08928	NA	NA
UHGV-2170618_51	PHROG	phrog_874	NA	unknown function
UHGV-2170618_51	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-2170618_51	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2170618_52	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2170618_52	UniRef90	UniRef90_A0A357JCP2	HNHc domain-containing protein	NA
UHGV-2170618_52	eggNOG-mapper	1423814.HMPREF0549_1779	NUMOD4 motif	NA
UHGV-2170618_52	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2170618_52	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-2170618_52	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-2170618_53	eggNOG-mapper	657309.BXY_08540	NA	NA
UHGV-2170618_55	PHROG	phrog_22725	NA	unknown function
UHGV-2170618_55	eggNOG-mapper	476272.RUMHYD_03319	NA	NA
UHGV-2170618_57	PHROG	phrog_12005	NA	unknown function
UHGV-2170618_58	PHROG	phrog_28300	NA	unknown function
UHGV-2170618_60	UniRef90	UniRef90_D1K9K9	NA	NA
UHGV-2170618_60	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-2170618_62	Structural annotation	PF20020	NA	NA
UHGV-2170618_63	Structural annotation	PF02699, MF_00085, TIGR00037, COG0231	NA	NA
UHGV-2170618_64	eggNOG-mapper	1122971.BAME01000058_gene4471	NA	NA
UHGV-2170618_64	Structural annotation	PF18275	NA	NA
UHGV-2170618_65	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2170618_65	UniRef90	UniRef90_UPI001C37881F	NUMOD4 domain-containing protein	NA
UHGV-2170618_65	eggNOG-mapper	679190.HMPREF0650_0103	NUMOD4 motif	NA
UHGV-2170618_65	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2170618_65	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2170618_65	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2170618_65	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-2170618_66	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2170618_66	PHROG	phrog_363	DNA methyltransferase	other
UHGV-2170618_66	UniRef90	UniRef90_UPI001E2B78BF	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2170618_66	eggNOG-mapper	1121098.HMPREF1534_01082	C-5 cytosine-specific DNA methylase	NA
UHGV-2170618_66	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2170618_66	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2170618_66	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2170618_66	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2170618_66	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2170618_69	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2170618_69	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2170618_69	UniRef90	UniRef90_A0A1Y3YRG2	DNA helicase	NA
UHGV-2170618_69	eggNOG-mapper	1077285.AGDG01000032_gene4173	Participates in initiation and elongation during chromosome replication	NA
UHGV-2170618_69	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2170618_69	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2170618_69	COG	COG0305	Replicative DNA helicase	NA
UHGV-2170618_69	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2170618_70	PHROG	phrog_16304	NA	unknown function
UHGV-2170618_70	UniRef90	UniRef90_UPI001E631D8F	NA	NA
UHGV-2170618_70	eggNOG-mapper	742726.HMPREF9448_02012	HNH endonuclease	NA
UHGV-2170618_70	Pfam	PF19808	NA	DUF6291
UHGV-2170618_70	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2170618_72	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2170618_72	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2170618_72	UniRef90	UniRef90_UPI000E48ADF6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2170618_72	eggNOG-mapper	435590.BVU_2854	Endodeoxyribonuclease RusA	NA
UHGV-2170618_72	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2170618_72	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2170618_74	eggNOG-mapper	411901.BACCAC_02347	NA	NA
UHGV-2170618_77	Structural annotation	PF02767, TIGR00663, COG0592	NA	NA
UHGV-2170618_78	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2170618_78	eggNOG-mapper	1121100.JCM6294_522	NA	NA
UHGV-2170618_78	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2170618_79	UniRef90	UniRef90_F3QQV6	Conserved domain protein	NA
UHGV-2170618_79	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-2170618_80	Structural annotation	PF12684, TIGR04256, COG5377	NA	NA
UHGV-2170618_82	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2170618_82	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-2170618_82	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-2170618_82	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-2170618_84	PHROG	phrog_19665	NA	unknown function
UHGV-2170618_84	eggNOG-mapper	1121098.HMPREF1534_01114	NA	NA
UHGV-2170618_84	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2170618_85	KOfam	K21038	brt; reverse transcriptase [EC:2.7.7.49]	NA
UHGV-2170618_85	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2170618_85	UniRef90	UniRef90_A0A1Y3YRG0	Reverse transcriptase	NA
UHGV-2170618_85	eggNOG-mapper	457424.BFAG_02440	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2170618_85	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2170618_85	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2170618_85	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2170618_85	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-2170618_86	PHROG	phrog_11581	NA	unknown function
UHGV-2170618_86	eggNOG-mapper	457424.BFAG_02391	NA	NA
UHGV-2170618_87	PHROG	phrog_11581	NA	unknown function
UHGV-2170618_87	eggNOG-mapper	470145.BACCOP_01179	NA	NA
UHGV-2170618_88	PHROG	phrog_4074	NA	unknown function
UHGV-2170618_88	UniRef90	UniRef90_V7HYF3	Putative bacteriophage protein	NA
UHGV-2170618_88	eggNOG-mapper	742767.HMPREF9456_02400	NA	NA
UHGV-2170618_89	UniRef90	UniRef90_UPI0018990B29	helix-turn-helix domain-containing protein	NA
UHGV-2170618_89	eggNOG-mapper	1121100.JCM6294_512	NA	NA
UHGV-2170618_89	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2170618_89	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2170618_90	eggNOG-mapper	1347393.HG726021_gene411	NA	NA
UHGV-2170618_91	eggNOG-mapper	449673.BACSTE_00172	NA	NA
UHGV-2170618_91	Structural annotation	NF033948	NA	NA
UHGV-2170618_92	eggNOG-mapper	411476.BACOVA_03870	NA	NA
UHGV-2170618_92	Structural annotation	PF01475, MF_01909, NF041413, COG5045	NA	NA
UHGV-2170618_97	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2170618_97	UniRef90	UniRef90_A0A374URU3	HTH cro/C1-type domain-containing protein	NA
UHGV-2170618_97	eggNOG-mapper	1121100.JCM6294_1580	NA	NA
UHGV-2170618_100	PHROG	phrog_23063	NA	unknown function
UHGV-2170618_100	eggNOG-mapper	357276.EL88_08575	NA	NA
UHGV-2170618_100	Structural annotation	PF20482	NA	NA