UHGV-2170677

Genome information

Genome length 34,377 bps

CDS count 48

Completeness 75.76% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-2170677
vOTU ID	vOTU-040031
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029871\|Ga0245314_100598\|provirus_3_34379
BioSample	SAMEA3449364
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.55
Jumbo phage	No

Genome content
Genome length	34,377 bps
GC content	41.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.68%
Average CDS length	673.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2170677_2	PHROG	phrog_18190	NA	unknown function
UHGV-2170677_2	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2170677_3	PHROG	phrog_1194	NA	unknown function
UHGV-2170677_3	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-2170677_3	Pfam	PF20458	NA	DUF6711
UHGV-2170677_3	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2170677_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2170677_4	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-2170677_4	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-2170677_4	COG	COG1511	NA	NA
UHGV-2170677_4	Structural annotation	PF20155, COG3941	NA	NA
UHGV-2170677_7	PHROG	phrog_706	NA	unknown function
UHGV-2170677_7	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-2170677_7	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-2170677_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2170677_7	Structural annotation	PF06854	NA	NA
UHGV-2170677_8	PHROG	phrog_11299	NA	unknown function
UHGV-2170677_8	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2170677_8	Structural annotation	PF10666	NA	NA
UHGV-2170677_9	PHROG	phrog_3099	NA	unknown function
UHGV-2170677_9	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-2170677_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2170677_10	PHROG	phrog_3266	tail completion	connector
UHGV-2170677_10	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-2170677_10	Structural annotation	PF20765	NA	NA
UHGV-2170677_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2170677_11	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-2170677_11	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2170677_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2170677_11	Structural annotation	PF11114	NA	NA
UHGV-2170677_12	PHROG	phrog_3366	NA	unknown function
UHGV-2170677_12	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-2170677_12	Pfam	PF20536	NA	DUF6751
UHGV-2170677_12	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2170677_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2170677_13	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2170677_13	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-2170677_14	PHROG	phrog_422	major head protein	head and packaging
UHGV-2170677_14	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-2170677_14	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2170677_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2170677_15	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-2170677_15	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2170677_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2170677_15	Structural annotation	PF06810	NA	NA
UHGV-2170677_16	PHROG	phrog_2616	NA	unknown function
UHGV-2170677_16	Structural annotation	PF01281	NA	NA
UHGV-2170677_17	Structural annotation	PF11344	NA	NA
UHGV-2170677_18	eggNOG-mapper	861454.HMPREF9099_00606	NA	NA
UHGV-2170677_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2170677_19	UniRef90	UniRef90_UPI001B3C97A7	phage minor capsid protein	NA
UHGV-2170677_19	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-2170677_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2170677_19	COG	COG2369	NA	NA
UHGV-2170677_19	Structural annotation	PF06152	NA	NA
UHGV-2170677_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-2170677_20	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-2170677_20	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-2170677_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2170677_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2170677_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2170677_21	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-2170677_21	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2170677_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2170677_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2170677_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2170677_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-2170677_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2170677_22	Structural annotation	TIGR01636	NA	NA
UHGV-2170677_23	PHROG	phrog_25754	NA	unknown function
UHGV-2170677_23	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-2170677_23	Structural annotation	PF06372, NF041655	NA	NA
UHGV-2170677_27	Structural annotation	PF19824, MF_01506	NA	NA
UHGV-2170677_29	Structural annotation	PF02559, MF_00667, TIGR02861	NA	NA
UHGV-2170677_30	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2170677_30	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-2170677_30	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-2170677_30	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2170677_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2170677_30	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2170677_31	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2170677_31	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2170677_31	UniRef90	UniRef90_A0A359YIC2	Phage replicative DNA helicase, repA	NA
UHGV-2170677_31	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-2170677_31	COG	COG3598	RecA-family ATPase	NA
UHGV-2170677_32	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2170677_32	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2170677_32	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-2170677_32	eggNOG-mapper	411462.DORLON_00808	Primase C terminal 2 (PriCT-2)	NA
UHGV-2170677_32	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2170677_32	Pfam	PF13481	AAA domain	AAA_25
UHGV-2170677_32	COG	COG3598	RecA-family ATPase	NA
UHGV-2170677_32	Structural annotation	PF13481, PF08707, MF_00348, NF004384, NF040561, COG3598, COG1467	NA	NA
UHGV-2170677_33	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2170677_33	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2170677_33	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-2170677_33	eggNOG-mapper	1235792.C808_05388	helicase superfamily c-terminal domain	NA
UHGV-2170677_33	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2170677_33	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2170677_33	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2170677_33	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2170677_33	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2170677_34	PHROG	phrog_2698	NA	unknown function
UHGV-2170677_34	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-2170677_34	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-2170677_34	Structural annotation	PF17426, NF005674	NA	NA
UHGV-2170677_35	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2170677_35	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-2170677_35	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-2170677_35	Pfam	PF13479	AAA domain	AAA_24
UHGV-2170677_35	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2170677_37	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2170677_37	PHROG	phrog_1499	NA	unknown function
UHGV-2170677_37	UniRef90	UniRef90_A0A2N0UXU2	Chromosome segregation protein	NA
UHGV-2170677_37	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-2170677_37	Pfam	PF13476	AAA domain	AAA_23
UHGV-2170677_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2170677_37	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-2170677_38	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2170677_38	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-2170677_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2170677_38	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-2170677_42	UniRef90	UniRef90_A0A2N0ULS1	YozE_SAM_like domain-containing protein	NA
UHGV-2170677_44	UniRef90	UniRef90_UPI001494A832	helix-turn-helix domain-containing protein	NA
UHGV-2170677_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2170677_44	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-2170677_45	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-2170677_45	eggNOG-mapper	1392501.JIAC01000001_gene589	sequence-specific DNA binding	NA
UHGV-2170677_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2170677_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2170677_45	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-2170677_46	PHROG	phrog_1914	NA	unknown function
UHGV-2170677_46	UniRef90	UniRef90_A0A373XNL4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2170677_46	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2170677_46	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2170677_46	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2170677_46	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2170677_47	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-2170677_48	KOfam	K14059	int; integrase	NA
UHGV-2170677_48	PHROG	phrog_1	integrase	integration and excision
UHGV-2170677_48	UniRef90	UniRef90_UPI0008345DF0	tyrosine-type recombinase/integrase	NA
UHGV-2170677_48	eggNOG-mapper	693746.OBV_01970	Phage integrase family	NA
UHGV-2170677_48	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-2170677_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2170677_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2170677_48	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA