UHGV-2170943

Genome information

Genome length 40,070 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-2170943
vOTU ID	vOTU-010286
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029820\|Ga0245026_100147\|provirus_29608_69677
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.82
Jumbo phage	No

Genome content
Genome length	40,070 bps
GC content	42.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.09%
Average CDS length	594.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2170943_1	KOfam	K14059	int; integrase	NA
UHGV-2170943_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2170943_1	UniRef90	UniRef90_G4KS64	Putative site-specific recombinase	NA
UHGV-2170943_1	eggNOG-mapper	693746.OBV_03260	Belongs to the 'phage' integrase family	NA
UHGV-2170943_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2170943_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2170943_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2170943_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2170943_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2170943_2	PHROG	phrog_7974	NA	unknown function
UHGV-2170943_2	eggNOG-mapper	931276.Cspa_c57370	Phage Mu protein F like protein	NA
UHGV-2170943_2	COG	COG2369	NA	NA
UHGV-2170943_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2170943_3	UniRef90	UniRef90_A0A7U9SLI0	LexA repressor	NA
UHGV-2170943_3	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2170943_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2170943_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2170943_5	PHROG	phrog_20886	NA	unknown function
UHGV-2170943_5	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2170943_5	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-2170943_5	Structural annotation	PF06114	NA	NA
UHGV-2170943_7	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2170943_7	UniRef90	UniRef90_A0A173WBA4	HTH cro/C1-type domain-containing protein	NA
UHGV-2170943_7	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2170943_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2170943_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2170943_7	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2170943_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2170943_9	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2170943_9	UniRef90	UniRef90_A0A173W8D7	Transcriptional regulator, y4mF family	NA
UHGV-2170943_9	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-2170943_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2170943_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2170943_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2170943_11	Structural annotation	NF040556	NA	NA
UHGV-2170943_13	PHROG	phrog_3202	NA	unknown function
UHGV-2170943_13	UniRef90	UniRef90_A0A1Y4R5Y7	YjzC family protein	NA
UHGV-2170943_13	eggNOG-mapper	445974.CLORAM_02964	YjzC-like protein	NA
UHGV-2170943_13	Pfam	PF14168	YjzC-like protein	YjzC
UHGV-2170943_13	Structural annotation	PF14168	NA	NA
UHGV-2170943_14	UniRef90	UniRef90_A0A173W999	Helix-turn-helix domain	NA
UHGV-2170943_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2170943_14	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-2170943_15	UniRef90	UniRef90_UPI00083045E7	helix-turn-helix domain-containing protein	NA
UHGV-2170943_15	eggNOG-mapper	536233.CLO_1793	Helix-turn-helix domain	NA
UHGV-2170943_15	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2170943_15	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2170943_17	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2170943_17	UniRef90	UniRef90_A0A416VA03	Recombinase	NA
UHGV-2170943_17	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-2170943_17	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2170943_17	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2170943_17	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2170943_17	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2170943_18	PHROG	phrog_674	NA	unknown function
UHGV-2170943_18	UniRef90	UniRef90_UPI00156D61E9	NA	NA
UHGV-2170943_18	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-2170943_18	Pfam	PF07083	NA	DUF1351
UHGV-2170943_18	Structural annotation	PF07083	NA	NA
UHGV-2170943_21	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2170943_21	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2170943_21	UniRef90	UniRef90_A0A173W8R4	p33	NA
UHGV-2170943_21	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-2170943_21	Pfam	PF03837	RecT family	RecT
UHGV-2170943_21	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2170943_21	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2170943_21	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2170943_22	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2170943_22	UniRef90	UniRef90_A0A3R6WN18	NA	NA
UHGV-2170943_22	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-2170943_22	Pfam	PF06356	NA	DUF1064
UHGV-2170943_22	Structural annotation	PF06356	NA	NA
UHGV-2170943_23	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2170943_23	UniRef90	UniRef90_A0A3R6T4J6	Phage_rep_org_N domain-containing protein	NA
UHGV-2170943_23	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-2170943_23	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2170943_23	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2170943_23	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-2170943_24	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2170943_24	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2170943_24	UniRef90	UniRef90_A0A173W8R8	Modification methylase MboII	NA
UHGV-2170943_24	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-2170943_24	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2170943_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2170943_24	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2170943_24	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-2170943_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2170943_25	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2170943_25	UniRef90	UniRef90_A0A3A6J7Y8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2170943_25	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-2170943_25	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2170943_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2170943_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2170943_25	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2170943_26	UniRef90	UniRef90_A0A3D0PT83	Toxin-antitoxin system, toxin component, Bro family protein (Fragment)	NA
UHGV-2170943_26	eggNOG-mapper	411473.RUMCAL_00231	BRO family, N-terminal domain	NA
UHGV-2170943_26	COG	COG3617	Prophage antirepressor	NA
UHGV-2170943_27	PHROG	phrog_2776	NA	unknown function
UHGV-2170943_27	UniRef90	UniRef90_A0A5S4VR73	Helix-turn-helix domain-containing protein	NA
UHGV-2170943_27	eggNOG-mapper	411490.ANACAC_00794	NA	NA
UHGV-2170943_27	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-2170943_28	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-2170943_29	eggNOG-mapper	397288.C806_00098	NA	NA
UHGV-2170943_30	eggNOG-mapper	610130.Closa_1375	NA	NA
UHGV-2170943_31	PHROG	phrog_8684	NA	unknown function
UHGV-2170943_31	UniRef90	UniRef90_A0A3R7C0X3	YopX domain-containing protein	NA
UHGV-2170943_31	eggNOG-mapper	1235794.C811_01545	NA	NA
UHGV-2170943_31	Pfam	PF09643	YopX protein	YopX
UHGV-2170943_31	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2170943_31	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2170943_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2170943_34	UniRef90	UniRef90_A0A174WV03	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-2170943_34	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-2170943_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2170943_34	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-2170943_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2170943_36	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2170943_36	UniRef90	UniRef90_A0A3A6J830	Terminase small subunit	NA
UHGV-2170943_36	eggNOG-mapper	445335.CBN_2993	Terminase small subunit	NA
UHGV-2170943_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2170943_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2170943_36	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2170943_37	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-2170943_37	UniRef90	UniRef90_A0A3A6JKF1	Terminase	NA
UHGV-2170943_37	eggNOG-mapper	1408437.JNJN01000045_gene596	TIGRFAM Phage	NA
UHGV-2170943_37	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-2170943_37	COG	COG5410	NA	NA
UHGV-2170943_37	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-2170943_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-2170943_38	UniRef90	UniRef90_A0A3A6J7Z8	Phage portal protein	NA
UHGV-2170943_38	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2170943_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2170943_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2170943_39	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-2170943_39	Structural annotation	PF10651	NA	NA
UHGV-2170943_41	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-2170943_41	UniRef90	UniRef90_A0A8D9L2C5	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-2170943_41	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-2170943_41	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2170943_41	COG	COG2369	NA	NA
UHGV-2170943_41	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-2170943_42	UniRef90	UniRef90_A0A416UY02	Glutamyl-tRNA amidotransferase	NA
UHGV-2170943_43	PHROG	phrog_872	NA	unknown function
UHGV-2170943_43	UniRef90	UniRef90_UPI0018C70BF8	NA	NA
UHGV-2170943_43	eggNOG-mapper	573413.Spirs_2170	NA	NA
UHGV-2170943_43	Pfam	PF11195	NA	DUF2829
UHGV-2170943_43	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2170943_43	Structural annotation	PF11195	NA	NA
UHGV-2170943_44	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2170943_44	UniRef90	UniRef90_UPI000E5C7AD7	phage scaffolding protein	NA
UHGV-2170943_44	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-2170943_44	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2170943_44	Structural annotation	PF06810	NA	NA
UHGV-2170943_45	PHROG	phrog_212	major head protein	head and packaging
UHGV-2170943_45	UniRef90	UniRef90_A0A3A6J9J0	Phage capsid protein	NA
UHGV-2170943_45	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-2170943_45	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2170943_47	PHROG	phrog_1236	head protein	head and packaging
UHGV-2170943_47	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-2170943_47	Structural annotation	PF05135	NA	NA
UHGV-2170943_48	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-2170943_48	UniRef90	UniRef90_R6E225	Putative phage head-tail adaptor	NA
UHGV-2170943_48	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-2170943_48	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2170943_49	UniRef90	UniRef90_UPI000E5D9FC1	HK97 gp10 family phage protein	NA
UHGV-2170943_49	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-2170943_49	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2170943_50	PHROG	phrog_957	head protein	head and packaging
UHGV-2170943_50	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-2170943_50	Structural annotation	PF12691	NA	NA
UHGV-2170943_51	PHROG	phrog_885	major tail protein	tail
UHGV-2170943_51	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-2170943_51	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2170943_52	PHROG	phrog_1021	NA	unknown function
UHGV-2170943_52	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-2170943_53	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-2170943_54	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2170943_54	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-2170943_54	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2170943_54	Structural annotation	PF20155, MF_04138, COG3941	NA	NA
UHGV-2170943_55	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2170943_55	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-2170943_55	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-2170943_55	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2170943_56	PHROG	phrog_538	minor tail protein	tail
UHGV-2170943_56	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-2170943_56	eggNOG-mapper	658655.HMPREF0988_02550	NA	NA
UHGV-2170943_56	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2170943_56	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2170943_57	PHROG	phrog_9994	NA	unknown function
UHGV-2170943_57	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-2170943_57	Structural annotation	NF012201	NA	NA
UHGV-2170943_58	PHROG	phrog_199	holin	lysis
UHGV-2170943_58	UniRef90	UniRef90_A0A173W8Y4	Phage-related holin (Lysis protein)	NA
UHGV-2170943_58	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-2170943_58	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2170943_58	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2170943_58	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2170943_58	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2170943_59	KOfam	K07273	acm; lysozyme	NA
UHGV-2170943_59	PHROG	phrog_291	endolysin	lysis
UHGV-2170943_59	UniRef90	UniRef90_A0A1Q6MG54	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-2170943_59	eggNOG-mapper	411474.COPEUT_02639	hydrolase, family 25	NA
UHGV-2170943_59	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2170943_59	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2170943_59	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2170943_59	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2170943_60	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2170943_60	UniRef90	UniRef90_A8SXS3	HTH cro/C1-type domain-containing protein	NA
UHGV-2170943_60	eggNOG-mapper	764299.STRIC_1923	Transcriptional regulator	NA
UHGV-2170943_60	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2170943_60	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2170943_60	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2170943_61	PHROG	phrog_18218	NA	unknown function
UHGV-2170943_61	UniRef90	UniRef90_R6UJ37	Ribonuclease S-4	NA
UHGV-2170943_61	eggNOG-mapper	411474.COPEUT_02638	NA	NA
UHGV-2170943_61	Structural annotation	PF06946	NA	NA
UHGV-2170943_62	KOfam	K07273	acm; lysozyme	NA
UHGV-2170943_62	PHROG	phrog_291	endolysin	lysis
UHGV-2170943_62	UniRef90	UniRef90_D5HGU6	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-2170943_62	eggNOG-mapper	411474.COPEUT_02639	hydrolase, family 25	NA
UHGV-2170943_62	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2170943_62	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2170943_62	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2170943_62	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA