UHGV-2171828

Genome information

Genome length 33,561 bps

CDS count 47

Completeness 87.33% (medium-quality)

geNomad score 0.9530

Prediction confidence Confident

Genome information
Genome ID	UHGV-2171828
vOTU ID	vOTU-042176
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029839\|Ga0245267_100004\|provirus_191861_236264
BioSample	SAMEA3449318
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9530
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.55
Jumbo phage	No

Genome content
Genome length	33,561 bps
GC content	49.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.69%
Average CDS length	670.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2171828_1	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2171828_1	UniRef90	UniRef90_A0A0B0HIQ0	HTH-type transcriptional regulator Xre	NA
UHGV-2171828_1	eggNOG-mapper	1132442.KB889752_gene869	Helix-turn-helix XRE-family like proteins	NA
UHGV-2171828_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2171828_2	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-2171828_2	UniRef90	UniRef90_A0A5B6P9C0	XRE family transcriptional regulator	NA
UHGV-2171828_2	eggNOG-mapper	1007096.BAGW01000023_gene157	NA	NA
UHGV-2171828_2	Structural annotation	TIGR03070	NA	NA
UHGV-2171828_3	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2171828_3	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-2171828_4	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2171828_4	PHROG	phrog_18750	NA	unknown function
UHGV-2171828_4	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-2171828_4	eggNOG-mapper	445972.ANACOL_03333	Cell wall hydrolase	NA
UHGV-2171828_4	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-2171828_4	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-2171828_4	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-2171828_5	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-2171828_5	PHROG	phrog_923	NA	unknown function
UHGV-2171828_5	UniRef90	UniRef90_UPI0009F73A1A	pentapeptide repeat-containing protein	NA
UHGV-2171828_5	eggNOG-mapper	768710.DesyoDRAFT_5248	Pentapeptide repeats (8 copies)	NA
UHGV-2171828_5	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-2171828_5	COG	COG1357	NA	NA
UHGV-2171828_5	Structural annotation	PF13599, PF18350, MF_01354, NF000420, COG4873	NA	NA
UHGV-2171828_7	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2171828_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2171828_7	UniRef90	UniRef90_R6HY73	HTH cro/C1-type domain-containing protein	NA
UHGV-2171828_7	eggNOG-mapper	457412.RSAG_04663	sequence-specific DNA binding	NA
UHGV-2171828_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2171828_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2171828_7	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2171828_8	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2171828_8	PHROG	phrog_1499	NA	unknown function
UHGV-2171828_8	UniRef90	UniRef90_R6IXY5	AAA_15 domain-containing protein	NA
UHGV-2171828_8	eggNOG-mapper	478749.BRYFOR_07583	domain protein	NA
UHGV-2171828_8	PADLOC	AAA_15	NA	NA
UHGV-2171828_8	Pfam	PF13476	AAA domain	AAA_23
UHGV-2171828_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2171828_8	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2171828_9	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2171828_9	UniRef90	UniRef90_UPI001411FE86	ATP-binding protein	NA
UHGV-2171828_9	eggNOG-mapper	394503.Ccel_3309	AAA domain	NA
UHGV-2171828_9	Pfam	PF13479	AAA domain	AAA_24
UHGV-2171828_9	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2171828_10	PHROG	phrog_2698	NA	unknown function
UHGV-2171828_10	UniRef90	UniRef90_A0A417IL23	NA	NA
UHGV-2171828_10	eggNOG-mapper	1123511.KB905868_gene200	NA	NA
UHGV-2171828_10	Structural annotation	PF05037	NA	NA
UHGV-2171828_11	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2171828_11	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2171828_11	UniRef90	UniRef90_R6I0L6	Type III restriction protein res subunit	NA
UHGV-2171828_11	eggNOG-mapper	610130.Closa_1369	DEAD-like helicases superfamily	NA
UHGV-2171828_11	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2171828_11	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2171828_11	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2171828_11	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2171828_11	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2171828_12	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2171828_12	UniRef90	UniRef90_A0A8J6IQY0	Helix-turn-helix transcriptional regulator	NA
UHGV-2171828_12	eggNOG-mapper	573061.Clocel_3551	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2171828_12	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2171828_12	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2171828_12	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2171828_14	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2171828_14	UniRef90	UniRef90_R6H304	AP2 domain-containing protein	NA
UHGV-2171828_14	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-2171828_14	Structural annotation	PF17375	NA	NA
UHGV-2171828_15	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2171828_15	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2171828_15	UniRef90	UniRef90_A0A1C6CSE0	Regulatory protein repA	NA
UHGV-2171828_15	eggNOG-mapper	552396.HMPREF0863_02435	Primase C terminal 2 (PriCT-2)	NA
UHGV-2171828_15	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2171828_15	Pfam	PF13481	AAA domain	AAA_25
UHGV-2171828_15	COG	COG3598	RecA-family ATPase	NA
UHGV-2171828_15	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2171828_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2171828_16	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2171828_16	UniRef90	UniRef90_R6HY68	Endodeoxyribonuclease RusA	NA
UHGV-2171828_16	eggNOG-mapper	394503.Ccel_3302	endodeoxyribonuclease RusA	NA
UHGV-2171828_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2171828_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2171828_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2171828_17	Structural annotation	NF001606	NA	NA
UHGV-2171828_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2171828_18	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-2171828_18	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-2171828_18	Structural annotation	PF04545	NA	NA
UHGV-2171828_19	Structural annotation	NF007312, COG2336	NA	NA
UHGV-2171828_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2171828_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2171828_21	UniRef90	UniRef90_A0A374UNI2	Terminase small subunit	NA
UHGV-2171828_21	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-2171828_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2171828_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2171828_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2171828_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2171828_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2171828_22	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-2171828_22	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-2171828_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2171828_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2171828_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2171828_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-2171828_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2171828_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-2171828_23	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-2171828_23	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2171828_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2171828_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2171828_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2171828_24	UniRef90	UniRef90_A0A3D2QEP6	Phage_Mu_F domain-containing protein	NA
UHGV-2171828_24	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-2171828_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2171828_24	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-2171828_24	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2171828_24	COG	COG2369	NA	NA
UHGV-2171828_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2171828_26	UniRef90	UniRef90_UPI001651708C	phage scaffolding protein	NA
UHGV-2171828_26	eggNOG-mapper	1196028.ALEF01000043_gene465	Phage minor structural protein GP20	NA
UHGV-2171828_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2171828_27	PHROG	phrog_283	major head protein	head and packaging
UHGV-2171828_27	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-2171828_27	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-2171828_27	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-2171828_27	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2171828_28	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2171828_28	UniRef90	UniRef90_R6I6I7	NA	NA
UHGV-2171828_28	eggNOG-mapper	268407.PWYN_03015	NA	NA
UHGV-2171828_29	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2171828_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2171828_30	UniRef90	UniRef90_R6IVT6	Bacteriophage protein PF04883 family	NA
UHGV-2171828_30	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2171828_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2171828_30	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2171828_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2171828_31	Structural annotation	PF05657	NA	NA
UHGV-2171828_32	PHROG	phrog_158	major tail protein	tail
UHGV-2171828_32	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-2171828_32	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-2171828_32	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-2171828_32	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2171828_33	UniRef90	UniRef90_UPI0012BCDD8A	NA	NA
UHGV-2171828_33	eggNOG-mapper	1211844.CBLM010000016_gene1484	NA	NA
UHGV-2171828_33	Structural annotation	PF19591	NA	NA
UHGV-2171828_34	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2171828_34	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-2171828_34	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2171828_35	PHROG	phrog_23726	NA	unknown function
UHGV-2171828_35	UniRef90	UniRef90_A0A0M1UTM9	Cell surface domain protein	NA
UHGV-2171828_35	eggNOG-mapper	428125.CLOLEP_01549	cell wall binding repeat	NA
UHGV-2171828_35	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-2171828_36	PHROG	phrog_1194	NA	unknown function
UHGV-2171828_36	UniRef90	UniRef90_A0A0R1Q5P9	NA	NA
UHGV-2171828_36	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-2171828_36	Pfam	PF20458	NA	DUF6711
UHGV-2171828_36	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2171828_37	PHROG	phrog_6616	tail protein	tail
UHGV-2171828_37	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-2171828_37	eggNOG-mapper	1294142.CINTURNW_1042	Phage minor structural protein	NA
UHGV-2171828_37	COG	COG4926	Phage-related protein	NA
UHGV-2171828_37	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2171828_39	UniRef90	UniRef90_R6HYD9	Collagen triple helix repeat protein	NA
UHGV-2171828_39	Structural annotation	PF08481	NA	NA
UHGV-2171828_40	UniRef90	UniRef90_UPI001956EB51	leucine-rich repeat protein	NA
UHGV-2171828_40	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-2171828_40	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-2171828_40	Structural annotation	PF13306	NA	NA
UHGV-2171828_42	PHROG	phrog_27545	NA	unknown function
UHGV-2171828_42	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-2171828_42	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-2171828_42	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2171828_43	PHROG	phrog_1863	NA	unknown function
UHGV-2171828_43	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-2171828_44	PHROG	phrog_7698	endolysin	lysis
UHGV-2171828_44	UniRef90	UniRef90_R6IVV6	Possible cell wall-binding protein	NA
UHGV-2171828_44	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2171828_44	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2171828_44	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2171828_44	Structural annotation	PF01476, TIGR02899, COG1388	NA	NA
UHGV-2171828_45	PHROG	phrog_608	holin	lysis
UHGV-2171828_45	UniRef90	UniRef90_R6I9L8	Putative phage holin	NA
UHGV-2171828_45	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-2171828_45	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-2171828_47	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-2171828_47	PHROG	phrog_9764	NA	unknown function
UHGV-2171828_47	UniRef90	UniRef90_A0A5C8JIV1	Type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-2171828_47	eggNOG-mapper	1414720.CBYM010000017_gene3098	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-2171828_47	PADLOC	AbiQ	AbiQ	Abi
UHGV-2171828_47	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin