UHGV-2172071

Genome information

Genome length 39,525 bps

CDS count 61

Completeness 69.24% (medium-quality)

geNomad score 0.9729

Prediction confidence Confident

Genome information
Genome ID	UHGV-2172071
vOTU ID	vOTU-034340
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029876\|Ga0245325_100588\|provirus_13495_53019
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9729
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.48
Jumbo phage	No

Genome content
Genome length	39,525 bps
GC content	46.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	86.54%
Average CDS length	563.85 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2172071_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2172071_1	UniRef90	UniRef90_R6VD89	Peptidase_S24 domain-containing protein	NA
UHGV-2172071_1	eggNOG-mapper	679935.Alfi_2522	Transcriptional regulator	NA
UHGV-2172071_1	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2172071_1	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2172071_2	UniRef90	UniRef90_A0A5B5VMX3	Helix-turn-helix domain-containing protein	NA
UHGV-2172071_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2172071_6	PHROG	phrog_874	NA	unknown function
UHGV-2172071_6	eggNOG-mapper	563008.HMPREF0665_02420	NA	NA
UHGV-2172071_6	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2172071_7	PHROG	phrog_2776	NA	unknown function
UHGV-2172071_7	UniRef90	UniRef90_UPI001297AEBA	MmcB family DNA repair protein	NA
UHGV-2172071_7	eggNOG-mapper	580332.Slit_1962	NA	NA
UHGV-2172071_7	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-2172071_11	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-2172071_11	UniRef90	UniRef90_UPI0018749974	radical SAM protein	NA
UHGV-2172071_11	eggNOG-mapper	445970.ALIPUT_01609	radical SAM domain protein	NA
UHGV-2172071_11	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-2172071_11	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-2172071_12	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2172071_12	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2172071_12	UniRef90	UniRef90_UPI0018984E82	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2172071_12	eggNOG-mapper	1033733.CAEK01000007_gene1648	Cytosine-specific methyltransferase	NA
UHGV-2172071_12	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2172071_12	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2172071_12	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2172071_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2172071_12	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-2172071_13	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2172071_13	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-2172071_13	UniRef90	UniRef90_UPI001B39CDDA	site-specific DNA-methyltransferase	NA
UHGV-2172071_13	eggNOG-mapper	1123304.AQYA01000037_gene207	DNA methylase	NA
UHGV-2172071_13	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-2172071_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2172071_13	COG	COG0863	DNA modification methylase	NA
UHGV-2172071_13	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-2172071_14	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-2172071_14	PHROG	phrog_31265	NA	unknown function
UHGV-2172071_14	UniRef90	UniRef90_A0A5B5VMT7	Pentapeptide repeat-containing protein	NA
UHGV-2172071_14	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-2172071_14	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-2172071_14	Pfam	PF19062	NA	DUF5758
UHGV-2172071_14	COG	COG1357	NA	NA
UHGV-2172071_14	Structural annotation	PF19062, PF13599, NF011744, COG1357	NA	NA
UHGV-2172071_15	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2172071_15	UniRef90	UniRef90_UPI0013DE86F0	DnaD domain protein	NA
UHGV-2172071_15	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-2172071_15	Structural annotation	PF10771, MF_01177, NF041413, COG0640	NA	NA
UHGV-2172071_16	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2172071_16	UniRef90	UniRef90_A0A5B5VN39	Recombinase	NA
UHGV-2172071_16	eggNOG-mapper	1268240.ATFI01000007_gene442	Bacteriophage Lambda NinG protein	NA
UHGV-2172071_16	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-2172071_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2172071_17	eggNOG-mapper	742725.HMPREF9450_02078	NA	NA
UHGV-2172071_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2172071_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2172071_18	UniRef90	UniRef90_A0A5B5VMW8	Single-stranded DNA-binding protein	NA
UHGV-2172071_18	eggNOG-mapper	445970.ALIPUT_01479	Single-stranded DNA-binding protein	NA
UHGV-2172071_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2172071_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2172071_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2172071_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2172071_18	Structural annotation	PF00436, MF_00984, NF006445, COG0629	NA	NA
UHGV-2172071_21	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2172071_21	UniRef90	UniRef90_UPI0016270003	ERF family protein	NA
UHGV-2172071_21	eggNOG-mapper	1327970.R9ZVT8_9CAUD	ERF superfamily	NA
UHGV-2172071_21	Pfam	PF04404	ERF superfamily	ERF
UHGV-2172071_21	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-2172071_26	PHROG	phrog_98	NA	unknown function
UHGV-2172071_26	UniRef90	UniRef90_UPI0015BFB08D	YopX family protein	NA
UHGV-2172071_26	eggNOG-mapper	1458852.A0A059T7V5_9CAUD	YopX protein	NA
UHGV-2172071_26	Pfam	PF09643	YopX protein	YopX
UHGV-2172071_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2172071_30	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-2172071_30	UniRef90	UniRef90_A0A5B5VJJ0	Helix-turn-helix transcriptional regulator	NA
UHGV-2172071_30	eggNOG-mapper	1116472.MGMO_177c00100	helix_turn_helix, Lux Regulon	NA
UHGV-2172071_30	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-2172071_30	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-2172071_30	Structural annotation	PF00196, MF_00674, COG2771	NA	NA
UHGV-2172071_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2172071_32	Structural annotation	NF010465, COG1476	NA	NA
UHGV-2172071_33	eggNOG-mapper	869213.JCM21142_31116	addiction module antidote protein HigA	NA
UHGV-2172071_33	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2172071_34	UniRef90	UniRef90_A0A4Y8VB06	XRE family transcriptional regulator	NA
UHGV-2172071_34	eggNOG-mapper	1236504.HMPREF2132_02400	Helix-turn-helix XRE-family like proteins	NA
UHGV-2172071_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2172071_34	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2172071_35	UniRef90	UniRef90_A0A1I2D2G0	Preprotein translocase subunit SecB	NA
UHGV-2172071_35	eggNOG-mapper	385682.AFSL01000060_gene1838	NA	NA
UHGV-2172071_36	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2172071_36	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-2172071_36	UniRef90	UniRef90_UPI001E41025A	NA	NA
UHGV-2172071_36	eggNOG-mapper	1235788.C802_00067	ParB-like nuclease domain	NA
UHGV-2172071_36	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2172071_36	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2172071_36	Pfam	PF14386	NA	DUF4417
UHGV-2172071_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2172071_36	Structural annotation	PF14386, PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2172071_37	eggNOG-mapper	1232449.BAHV02000008_gene629	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2172071_37	COG	COG2369	NA	NA
UHGV-2172071_37	Structural annotation	PF04002, MF_00018, NF000642	NA	NA
UHGV-2172071_38	PHROG	phrog_15125	NA	unknown function
UHGV-2172071_38	eggNOG-mapper	1235788.C802_00070	NA	NA
UHGV-2172071_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2172071_39	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2172071_39	UniRef90	UniRef90_UPI00189A6221	PBSX family phage terminase large subunit	NA
UHGV-2172071_39	eggNOG-mapper	762982.HMPREF9442_01173	Phage terminase, large subunit, PBSX family	NA
UHGV-2172071_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2172071_39	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2172071_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-2172071_39	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2172071_40	PHROG	phrog_64	portal protein	head and packaging
UHGV-2172071_40	UniRef90	UniRef90_UPI0018975DA4	phage portal protein	NA
UHGV-2172071_40	eggNOG-mapper	742767.HMPREF9456_03336	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2172071_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2172071_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2172071_41	PHROG	phrog_5824	NA	unknown function
UHGV-2172071_41	eggNOG-mapper	1347393.HG726021_gene482	NA	NA
UHGV-2172071_42	PHROG	phrog_9196	NA	unknown function
UHGV-2172071_42	UniRef90	UniRef90_UPI0012969B58	head fiber protein	NA
UHGV-2172071_42	eggNOG-mapper	762968.HMPREF9441_00578	Head fiber protein	NA
UHGV-2172071_42	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-2172071_42	Structural annotation	PF21430, NF009633	NA	NA
UHGV-2172071_43	PHROG	phrog_29	major head protein	head and packaging
UHGV-2172071_43	UniRef90	UniRef90_UPI0008D9EBC9	major capsid protein	NA
UHGV-2172071_43	eggNOG-mapper	742767.HMPREF9456_03319	NA	NA
UHGV-2172071_43	Structural annotation	PF03864, MF_04133	NA	NA
UHGV-2172071_44	PHROG	phrog_16646	NA	unknown function
UHGV-2172071_44	eggNOG-mapper	411477.PARMER_01697	NA	NA
UHGV-2172071_44	Pfam	PF20449	NA	DUF6706
UHGV-2172071_44	Structural annotation	PF20449	NA	NA
UHGV-2172071_45	Structural annotation	PF20536	NA	NA
UHGV-2172071_46	PHROG	phrog_5597	NA	unknown function
UHGV-2172071_46	eggNOG-mapper	445970.ALIPUT_01654	NA	NA
UHGV-2172071_46	Structural annotation	PF16807, TIGR01633	NA	NA
UHGV-2172071_47	PHROG	phrog_14600	NA	unknown function
UHGV-2172071_47	eggNOG-mapper	445970.ALIPUT_01653	NA	NA
UHGV-2172071_47	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2172071_49	eggNOG-mapper	585543.HMPREF0969_03351	NA	NA
UHGV-2172071_50	KOfam	K23368	TRIP11; thyroid receptor-interacting protein 11	NA
UHGV-2172071_50	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-2172071_50	UniRef90	UniRef90_A0A174HCG8	ATPase involved in DNA repair	NA
UHGV-2172071_50	eggNOG-mapper	445970.ALIPUT_01650	NA	NA
UHGV-2172071_50	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2172071_51	PHROG	phrog_5377	NA	unknown function
UHGV-2172071_51	eggNOG-mapper	1077285.AGDG01000032_gene4183	NA	NA
UHGV-2172071_52	PHROG	phrog_6305	tail protein	tail
UHGV-2172071_52	UniRef90	UniRef90_F3QSN0	Conserved domain protein	NA
UHGV-2172071_52	eggNOG-mapper	445970.ALIPUT_01641	NA	NA
UHGV-2172071_52	Structural annotation	PF11514, TIGR01633, COG4722	NA	NA
UHGV-2172071_53	PHROG	phrog_10156	NA	unknown function
UHGV-2172071_53	eggNOG-mapper	445970.ALIPUT_00697	NA	NA
UHGV-2172071_54	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-2172071_54	PHROG	phrog_15286	NA	unknown function
UHGV-2172071_54	UniRef90	UniRef90_A0A1Y3WWU5	Bro-N domain-containing protein	NA
UHGV-2172071_54	eggNOG-mapper	679935.Alfi_2588	BRO family, N-terminal domain	NA
UHGV-2172071_54	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2172071_54	COG	COG3617	Prophage antirepressor	NA
UHGV-2172071_54	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-2172071_55	Structural annotation	PF11012, NF007814, COG3187	NA	NA
UHGV-2172071_58	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2172071_58	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2172071_58	UniRef90	UniRef90_UPI001D082E5A	phage antirepressor KilAC domain-containing protein	NA
UHGV-2172071_58	eggNOG-mapper	445975.COLSTE_01114	BRO family, N-terminal domain	NA
UHGV-2172071_58	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2172071_58	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2172071_58	COG	COG3617	Prophage antirepressor	NA
UHGV-2172071_59	UniRef90	UniRef90_A0A396MAY4	NA	NA
UHGV-2172071_59	Structural annotation	PF18929	NA	NA
UHGV-2172071_60	UniRef90	UniRef90_UPI001C37909D	SEC-C domain-containing protein	NA
UHGV-2172071_60	eggNOG-mapper	1105110.MC5_03480	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane	NA
UHGV-2172071_60	Pfam	PF02810	SEC-C motif	SEC-C
UHGV-2172071_60	COG	COG0653	Preprotein translocase subunit SecA (ATPase, RNA helicase)	NA
UHGV-2172071_60	Structural annotation	PF13650, TIGR03698, COG5550	NA	NA
UHGV-2172071_61	PHROG	phrog_17422	NA	unknown function
UHGV-2172071_61	eggNOG-mapper	445970.ALIPUT_00692	cellulase activity	NA
UHGV-2172071_61	COG	COG4926	Phage-related protein	NA
UHGV-2172071_61	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA