UHGV-2172116

Genome information

Genome length 34,204 bps

CDS count 58

Completeness 94.15% (high-quality)

geNomad score 0.9744

Prediction confidence Confident

Genome information
Genome ID	UHGV-2172116
vOTU ID	vOTU-076635
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029816\|Ga0244888_100232\|provirus_45946_80149
BioSample	SAMEA3708732
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.15% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9744
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.26
Jumbo phage	No

Genome content
Genome length	34,204 bps
GC content	50.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	96.32%
Average CDS length	570.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2172116_1	KOfam	K14059	int; integrase	NA
UHGV-2172116_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2172116_1	UniRef90	UniRef90_UPI001D00309B	site-specific integrase	NA
UHGV-2172116_1	eggNOG-mapper	568816.Acin_1406	Belongs to the 'phage' integrase family	NA
UHGV-2172116_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2172116_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2172116_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2172116_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2172116_2	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-2172116_2	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2172116_2	UniRef90	UniRef90_A0A8D5A5Y3	DNA polymerase III subunit epsilon	NA
UHGV-2172116_2	eggNOG-mapper	927704.SELR_11040	BRCA1 C Terminus (BRCT) domain	NA
UHGV-2172116_2	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2172116_2	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2172116_2	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-2172116_2	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-2172116_2	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-2172116_2	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-2172116_3	PHROG	phrog_20936	NA	unknown function
UHGV-2172116_3	UniRef90	UniRef90_UPI000F8E443B	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2172116_3	Structural annotation	PF06114	NA	NA
UHGV-2172116_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2172116_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2172116_4	UniRef90	UniRef90_UPI00047E223F	helix-turn-helix domain-containing protein	NA
UHGV-2172116_4	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-2172116_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2172116_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2172116_4	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-2172116_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2172116_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2172116_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2172116_5	UniRef90	UniRef90_UPI000556DD62	helix-turn-helix domain-containing protein	NA
UHGV-2172116_5	eggNOG-mapper	1111454.HMPREF1250_1029	Helix-turn-helix XRE-family like proteins	NA
UHGV-2172116_5	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2172116_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2172116_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2172116_6	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2172116_6	UniRef90	UniRef90_A0A1Q9YJ51	Bro-N domain-containing protein	NA
UHGV-2172116_6	eggNOG-mapper	891391.LAC30SC_06695	BRO family, N-terminal domain	NA
UHGV-2172116_6	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2172116_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2172116_6	COG	COG3617	Prophage antirepressor	NA
UHGV-2172116_6	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-2172116_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2172116_9	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-2172116_13	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2172116_13	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2172116_13	UniRef90	UniRef90_UPI001D060172	AAA family ATPase	NA
UHGV-2172116_13	eggNOG-mapper	1027292.HMPREF9372_3397	nuclear chromosome segregation	NA
UHGV-2172116_13	PADLOC	PbeC_00031	PbeC	PBE
UHGV-2172116_13	Pfam	PF13476	AAA domain	AAA_23
UHGV-2172116_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2172116_13	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2172116_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2172116_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2172116_14	UniRef90	UniRef90_UPI0008ECD644	recombinase RecT	NA
UHGV-2172116_14	eggNOG-mapper	666686.B1NLA3E_01105	RecT family	NA
UHGV-2172116_14	Pfam	PF03837	RecT family	RecT
UHGV-2172116_15	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2172116_15	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2172116_15	UniRef90	UniRef90_UPI001D06240E	MBL fold metallo-hydrolase	NA
UHGV-2172116_15	eggNOG-mapper	926692.AZYG01000059_gene79	Metallo-beta-lactamase superfamily	NA
UHGV-2172116_15	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-2172116_15	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2172116_15	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-2172116_17	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-2172116_17	UniRef90	UniRef90_UPI0008DA0128	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-2172116_17	eggNOG-mapper	1095737.HMPREF1110_1897	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-2172116_17	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2172116_17	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2172116_20	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-2172116_23	PHROG	phrog_774	NA	unknown function
UHGV-2172116_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2172116_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2172116_24	UniRef90	UniRef90_UPI0008F2889A	single-stranded DNA-binding protein	NA
UHGV-2172116_24	eggNOG-mapper	591001.Acfer_0039	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2172116_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2172116_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2172116_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2172116_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2172116_24	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2172116_25	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2172116_25	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-2172116_25	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-2172116_25	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-2172116_29	Structural annotation	MF_00773	NA	NA
UHGV-2172116_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2172116_30	eggNOG-mapper	706434.HMPREF9429_00537	NA	NA
UHGV-2172116_30	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-2172116_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2172116_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2172116_31	UniRef90	UniRef90_A0A8D4UTL0	HNHc domain-containing protein	NA
UHGV-2172116_31	eggNOG-mapper	290402.Cbei_0903	HNH nucleases	NA
UHGV-2172116_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2172116_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2172116_31	Structural annotation	NF008448	NA	NA
UHGV-2172116_32	PHROG	phrog_1066	NA	unknown function
UHGV-2172116_32	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-2172116_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2172116_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2172116_33	UniRef90	UniRef90_A0A8D4UU77	Terminase	NA
UHGV-2172116_33	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-2172116_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2172116_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2172116_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2172116_33	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2172116_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-2172116_34	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-2172116_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2172116_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2172116_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-2172116_35	UniRef90	UniRef90_UPI000C56C706	phage portal protein	NA
UHGV-2172116_35	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-2172116_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2172116_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2172116_35	Structural annotation	PF04860, TIGR01537, COG4695	NA	NA
UHGV-2172116_36	KOfam	K06904	NA	NA
UHGV-2172116_36	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2172116_36	UniRef90	UniRef90_UPI00164975A0	HK97 family phage prohead protease	NA
UHGV-2172116_36	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-2172116_36	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2172116_36	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2172116_36	COG	COG3740	Phage head maturation protease	NA
UHGV-2172116_36	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2172116_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-2172116_37	UniRef90	UniRef90_UPI001648ED55	phage major capsid protein	NA
UHGV-2172116_37	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-2172116_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2172116_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2172116_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2172116_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2172116_38	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2172116_38	UniRef90	UniRef90_UPI001647B235	head-tail connector protein	NA
UHGV-2172116_38	eggNOG-mapper	935948.KE386495_gene1332	Phage gp6-like head-tail connector protein	NA
UHGV-2172116_38	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2172116_38	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2172116_38	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2172116_39	PHROG	phrog_25	head closure Hc1	connector
UHGV-2172116_39	UniRef90	UniRef90_UPI001648A1FB	phage head closure protein	NA
UHGV-2172116_39	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-2172116_39	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2172116_39	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2172116_39	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2172116_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2172116_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2172116_40	UniRef90	UniRef90_UPI001645C731	HK97 gp10 family phage protein	NA
UHGV-2172116_40	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2172116_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2172116_40	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2172116_41	PHROG	phrog_525	NA	unknown function
UHGV-2172116_41	eggNOG-mapper	293826.Amet_2419	NA	NA
UHGV-2172116_41	Pfam	PF20765	NA	DUF6838
UHGV-2172116_42	PHROG	phrog_1480	tail sheath	tail
UHGV-2172116_42	UniRef90	UniRef90_UPI0016491346	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-2172116_42	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-2172116_42	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2172116_42	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2172116_42	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2172116_43	PHROG	phrog_365	tail protein	tail
UHGV-2172116_43	UniRef90	UniRef90_A0A2S0M4K4	Phage portal protein	NA
UHGV-2172116_43	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-2172116_43	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2172116_43	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2172116_44	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2172116_44	UniRef90	UniRef90_UPI001645A435	XkdN-like protein	NA
UHGV-2172116_44	eggNOG-mapper	1232428.CAVO010000003_gene1002	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2172116_44	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2172116_44	Structural annotation	PF08890	NA	NA
UHGV-2172116_45	PHROG	phrog_2722	NA	unknown function
UHGV-2172116_46	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2172116_46	UniRef90	UniRef90_UPI001645A310	phage tail tape measure protein	NA
UHGV-2172116_46	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-2172116_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2172116_46	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2172116_46	COG	COG5283	Phage-related tail protein	NA
UHGV-2172116_46	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2172116_47	PHROG	phrog_5184	NA	unknown function
UHGV-2172116_47	UniRef90	UniRef90_W8TF03	Phage-like element PBSX protein XkdP	NA
UHGV-2172116_47	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-2172116_47	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-2172116_47	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2172116_47	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-2172116_48	PHROG	phrog_400	tail protein	tail
UHGV-2172116_48	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-2172116_48	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-2172116_48	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2172116_48	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-2172116_49	PHROG	phrog_579	NA	unknown function
UHGV-2172116_49	UniRef90	UniRef90_UPI0016483798	NA	NA
UHGV-2172116_49	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-2172116_49	Pfam	PF10844	NA	DUF2577
UHGV-2172116_49	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-2172116_50	PHROG	phrog_120	baseplate protein	tail
UHGV-2172116_50	UniRef90	UniRef90_UPI001646EAB8	NA	NA
UHGV-2172116_50	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-2172116_50	Pfam	PF10934	NA	DUF2634
UHGV-2172116_50	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2172116_50	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-2172116_51	PHROG	phrog_6	baseplate protein	tail
UHGV-2172116_51	UniRef90	UniRef90_UPI0016450683	baseplate J/gp47 family protein	NA
UHGV-2172116_51	eggNOG-mapper	1232428.CAVO010000003_gene996	Baseplate J-like protein	NA
UHGV-2172116_51	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2172116_51	COG	COG3299	NA	NA
UHGV-2172116_51	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2172116_52	PHROG	phrog_521	tail protein	tail
UHGV-2172116_52	UniRef90	UniRef90_A0A848EVX3	NA	NA
UHGV-2172116_52	eggNOG-mapper	568816.Acin_1302	NA	NA
UHGV-2172116_52	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2172116_52	COG	COG3778	NA	NA
UHGV-2172116_52	Structural annotation	PF10076, COG3778	NA	NA
UHGV-2172116_53	PHROG	phrog_7037	tail fiber protein	tail
UHGV-2172116_53	UniRef90	UniRef90_UPI000486D8B9	phage tail protein	NA
UHGV-2172116_53	eggNOG-mapper	1273103.NM10_08074	Phage tail-collar fibre protein	NA
UHGV-2172116_53	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2172116_53	Structural annotation	PF12571	NA	NA
UHGV-2172116_54	PHROG	phrog_1084	NA	unknown function
UHGV-2172116_54	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-2172116_54	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-2172116_56	eggNOG-mapper	1200557.JHWV01000006_gene1705	Membrane	NA
UHGV-2172116_56	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2172116_58	eggNOG-mapper	1273103.NM10_08099	NA	NA