UHGV-2172194

Genome information

Genome length 41,968 bps

CDS count 73

Completeness 99.90% (high-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-2172194
vOTU ID	vOTU-014665
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029844\|Ga0245276_1000242\|provirus_15196_57163
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.69
Jumbo phage	No

Genome content
Genome length	41,968 bps
GC content	27.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	91.07%
Average CDS length	526.40 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2172194_3	PHROG	phrog_9659	NA	unknown function
UHGV-2172194_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2172194_5	PHROG	phrog_9611	endolysin	lysis
UHGV-2172194_5	UniRef90	UniRef90_R6H5X6	N-acetylmuramyl-L-alanine amidase negative regulator of AmpC AmpD	NA
UHGV-2172194_5	eggNOG-mapper	642492.Clole_0841	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-2172194_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2172194_5	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2172194_5	Structural annotation	PF01510, PF20780, MF_04111, NF008758, COG5632	NA	NA
UHGV-2172194_6	PHROG	phrog_199	holin	lysis
UHGV-2172194_6	UniRef90	UniRef90_A0A1I2KQ14	Holin	NA
UHGV-2172194_6	eggNOG-mapper	1229783.C273_09544	Bacteriophage holin family	NA
UHGV-2172194_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2172194_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2172194_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2172194_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2172194_7	PHROG	phrog_2310	NA	unknown function
UHGV-2172194_7	eggNOG-mapper	632245.CLP_2682	NA	NA
UHGV-2172194_8	Structural annotation	TIGR03711	NA	NA
UHGV-2172194_9	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2172194_9	PHROG	phrog_6616	tail protein	tail
UHGV-2172194_9	eggNOG-mapper	279808.SH1753	Prophage endopeptidase tail	NA
UHGV-2172194_9	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-2172194_9	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-2172194_9	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-2172194_10	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-2172194_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2172194_11	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-2172194_11	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-2172194_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2172194_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2172194_12	UniRef90	UniRef90_R7F982	Conserved domain protein	NA
UHGV-2172194_12	eggNOG-mapper	573061.Clocel_0220	Mu-like prophage protein Com	NA
UHGV-2172194_12	Structural annotation	PF10122, COG4416	NA	NA
UHGV-2172194_13	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-2172194_13	eggNOG-mapper	394503.Ccel_3036	Bacteriophage Gp15 protein	NA
UHGV-2172194_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2172194_13	Structural annotation	PF06854	NA	NA
UHGV-2172194_14	PHROG	phrog_8300	NA	unknown function
UHGV-2172194_14	eggNOG-mapper	1123263.AUKY01000051_gene1073	NA	NA
UHGV-2172194_14	Structural annotation	PF06896	NA	NA
UHGV-2172194_15	PHROG	phrog_820	major tail protein	tail
UHGV-2172194_15	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-2172194_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2172194_16	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2172194_16	UniRef90	UniRef90_UPI0016BCEC89	minor capsid protein	NA
UHGV-2172194_16	eggNOG-mapper	1151292.QEW_2427	NA	NA
UHGV-2172194_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2172194_16	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2172194_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2172194_17	eggNOG-mapper	585501.HMPREF6123_0831	NA	NA
UHGV-2172194_18	PHROG	phrog_8710	NA	unknown function
UHGV-2172194_18	eggNOG-mapper	1282664.H354_06676	NA	NA
UHGV-2172194_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2172194_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2172194_19	eggNOG-mapper	552396.HMPREF0863_01637	NA	NA
UHGV-2172194_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-2172194_21	UniRef90	UniRef90_A0A1Q6LIQ2	Phage capsid protein	NA
UHGV-2172194_21	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-2172194_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2172194_24	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-2172194_24	UniRef90	UniRef90_A0A1Q6LGX4	PASTA domain-containing protein (Fragment)	NA
UHGV-2172194_24	eggNOG-mapper	1410674.JNKU01000005_gene1524	Host cell surface-exposed lipoprotein	NA
UHGV-2172194_24	Pfam	PF03793	PASTA domain	PASTA
UHGV-2172194_24	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-2172194_24	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2172194_24	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-2172194_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2172194_26	UniRef90	UniRef90_A0A8G1TMC4	Minor capsid protein	NA
UHGV-2172194_26	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2172194_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2172194_26	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2172194_26	Structural annotation	PF06152	NA	NA
UHGV-2172194_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-2172194_27	UniRef90	UniRef90_R7FBF4	Putative phage minor capsid protein	NA
UHGV-2172194_27	eggNOG-mapper	1294142.CINTURNW_1024	NA	NA
UHGV-2172194_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-2172194_28	PHROG	phrog_4502	NA	unknown function
UHGV-2172194_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2172194_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2172194_29	UniRef90	UniRef90_A0A1Q6LGZ0	Terminase	NA
UHGV-2172194_29	eggNOG-mapper	1232449.BAHV02000018_gene1531	Phage terminase, large subunit, PBSX family	NA
UHGV-2172194_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-2172194_29	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2172194_30	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-2172194_30	UniRef90	UniRef90_A0A1Q6LGU3	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-2172194_30	eggNOG-mapper	1232430.CAVG010000114_gene1028	NA	NA
UHGV-2172194_30	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-2172194_30	Structural annotation	PF13022, COG3677	NA	NA
UHGV-2172194_34	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-2172194_46	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-2172194_48	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2172194_48	UniRef90	UniRef90_A0A7C9LJY9	NA	NA
UHGV-2172194_48	eggNOG-mapper	879308.HMPREF9130_0415	NA	NA
UHGV-2172194_48	Pfam	PF06356	NA	DUF1064
UHGV-2172194_48	Structural annotation	PF06356	NA	NA
UHGV-2172194_49	eggNOG-mapper	411470.RUMGNA_02041	NA	NA
UHGV-2172194_50	PHROG	phrog_1123	NA	unknown function
UHGV-2172194_50	eggNOG-mapper	1560313.A0A0D3MSU0_9CAUD	NA	NA
UHGV-2172194_50	Structural annotation	PF02002, TIGR03433, COG1695	NA	NA
UHGV-2172194_51	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2172194_51	Structural annotation	PF11417	NA	NA
UHGV-2172194_52	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2172194_52	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2172194_52	eggNOG-mapper	1567011.A0A0A7S128_9VIRU	calcium ion binding	NA
UHGV-2172194_52	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2172194_52	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2172194_52	Structural annotation	PF07120, COG3756	NA	NA
UHGV-2172194_53	PHROG	phrog_7566	NA	unknown function
UHGV-2172194_53	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-2172194_54	Structural annotation	PF16454, NF007974	NA	NA
UHGV-2172194_55	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2172194_55	UniRef90	UniRef90_R5PYB3	Metallo-beta-lactamase domain protein	NA
UHGV-2172194_55	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-2172194_55	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2172194_55	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2172194_55	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-2172194_56	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2172194_56	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-2172194_56	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-2172194_56	Pfam	PF03837	RecT family	RecT
UHGV-2172194_56	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-2172194_56	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2172194_56	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2172194_57	PHROG	phrog_674	NA	unknown function
UHGV-2172194_57	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-2172194_57	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-2172194_57	Pfam	PF07083	NA	DUF1351
UHGV-2172194_57	Structural annotation	PF07083	NA	NA
UHGV-2172194_60	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2172194_60	UniRef90	UniRef90_N1ZZ26	NA	NA
UHGV-2172194_60	eggNOG-mapper	1235802.C823_04729	NA	NA
UHGV-2172194_60	Pfam	PF13643	NA	DUF4145
UHGV-2172194_60	Structural annotation	PF13643	NA	NA
UHGV-2172194_61	PHROG	phrog_14088	NA	unknown function
UHGV-2172194_61	UniRef90	UniRef90_A0A3R6M7R7	Carboxypeptidase	NA
UHGV-2172194_61	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-2172194_63	Structural annotation	PF09035, NF040990, COG3311	NA	NA
UHGV-2172194_66	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2172194_66	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2172194_66	UniRef90	UniRef90_A0A1Q6K3M2	HTH cro/C1-type domain-containing protein	NA
UHGV-2172194_66	eggNOG-mapper	755731.Clo1100_0531	Helix-turn-helix XRE-family like proteins	NA
UHGV-2172194_66	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2172194_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2172194_66	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2172194_67	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2172194_67	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2172194_67	UniRef90	UniRef90_A0A1Q6LHM3	HTH cro/C1-type domain-containing protein	NA
UHGV-2172194_67	eggNOG-mapper	632292.Calhy_0360	Helix-turn-helix domain	NA
UHGV-2172194_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2172194_67	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2172194_67	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2172194_68	PHROG	phrog_87	metallo-protease	other
UHGV-2172194_68	UniRef90	UniRef90_A0A2J6XX50	Peptidase_M78 domain-containing protein	NA
UHGV-2172194_68	eggNOG-mapper	663278.Ethha_2392	NA	NA
UHGV-2172194_68	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2172194_69	KOfam	K14059	int; integrase	NA
UHGV-2172194_69	PHROG	phrog_1	integrase	integration and excision
UHGV-2172194_69	UniRef90	UniRef90_UPI001E00B77B	site-specific integrase	NA
UHGV-2172194_69	eggNOG-mapper	86416.Clopa_0550	Belongs to the 'phage' integrase family	NA
UHGV-2172194_69	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2172194_69	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2172194_69	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2172194_69	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2172194_71	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2172194_71	PHROG	phrog_95	integrase	integration and excision
UHGV-2172194_71	UniRef90	UniRef90_A0A7X6NWA3	Recombinase family protein (Fragment)	NA
UHGV-2172194_71	eggNOG-mapper	1235790.C805_02273	Ogr/Delta-like zinc finger	NA
UHGV-2172194_71	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2172194_71	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2172194_73	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2172194_73	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2172194_73	UniRef90	UniRef90_R7FG63	SF4 helicase domain-containing protein	NA
UHGV-2172194_73	eggNOG-mapper	665956.HMPREF1032_03165	Participates in initiation and elongation during chromosome replication	NA
UHGV-2172194_73	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2172194_73	COG	COG0305	Replicative DNA helicase	NA
UHGV-2172194_73	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA