UHGV-2172430

Genome information

Genome length 36,967 bps

CDS count 53

Completeness 95.69% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-2172430
vOTU ID	vOTU-063957
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029820\|Ga0245026_100226\|provirus_58841_95807
BioSample	SAMEA3708870
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.52
Jumbo phage	No

Genome content
Genome length	36,967 bps
GC content	43.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.50%
Average CDS length	647.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2172430_1	KOfam	K14059	int; integrase	NA
UHGV-2172430_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2172430_1	UniRef90	UniRef90_R6FPR5	Tyr recombinase domain-containing protein	NA
UHGV-2172430_1	eggNOG-mapper	1235793.C809_00531	Phage integrase family	NA
UHGV-2172430_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2172430_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2172430_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2172430_2	PHROG	phrog_29766	NA	unknown function
UHGV-2172430_2	UniRef90	UniRef90_R6FYE5	Gp2	NA
UHGV-2172430_2	eggNOG-mapper	1391647.AVSV01000022_gene2581	NA	NA
UHGV-2172430_3	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2172430_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2172430_3	UniRef90	UniRef90_A0A174KVM8	Conjugal transfer protein TrbA	NA
UHGV-2172430_3	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-2172430_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2172430_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2172430_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2172430_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2172430_5	UniRef90	UniRef90_A0A1C5T373	Antitoxin PezA	NA
UHGV-2172430_5	eggNOG-mapper	742741.HMPREF9475_00400	Helix-turn-helix XRE-family like proteins	NA
UHGV-2172430_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2172430_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2172430_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2172430_5	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2172430_7	PHROG	phrog_6058	NA	unknown function
UHGV-2172430_7	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-2172430_9	PHROG	phrog_38345	NA	unknown function
UHGV-2172430_9	Structural annotation	PF01375, NF002013, COG3502	NA	NA
UHGV-2172430_10	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2172430_10	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-2172430_10	eggNOG-mapper	411468.CLOSCI_01469	NA	NA
UHGV-2172430_10	Structural annotation	PF21578	NA	NA
UHGV-2172430_11	PHROG	phrog_824	NA	unknown function
UHGV-2172430_11	UniRef90	UniRef90_A0A494WKS7	VRR-NUC domain-containing protein	NA
UHGV-2172430_11	eggNOG-mapper	411468.CLOSCI_01472	VRR_NUC	NA
UHGV-2172430_11	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2172430_12	PHROG	phrog_20014	NA	unknown function
UHGV-2172430_12	eggNOG-mapper	411470.RUMGNA_02042	NA	NA
UHGV-2172430_13	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2172430_13	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2172430_13	UniRef90	UniRef90_A0A412T732	ParA family protein	NA
UHGV-2172430_13	eggNOG-mapper	411468.CLOSCI_01475	Cellulose biosynthesis protein BcsQ	NA
UHGV-2172430_13	Pfam	PF13614	AAA domain	AAA_31
UHGV-2172430_13	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2172430_13	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-2172430_15	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2172430_15	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2172430_15	UniRef90	UniRef90_B0NDE9	Cytosine-specific methyltransferase	NA
UHGV-2172430_15	eggNOG-mapper	411468.CLOSCI_01477	C-5 cytosine-specific DNA methylase	NA
UHGV-2172430_15	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2172430_15	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2172430_15	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2172430_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2172430_15	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-2172430_16	PHROG	phrog_24368	NA	unknown function
UHGV-2172430_16	eggNOG-mapper	742741.HMPREF9475_00412	NA	NA
UHGV-2172430_17	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2172430_17	PHROG	phrog_15982	NA	unknown function
UHGV-2172430_17	UniRef90	UniRef90_A0A412Q2H3	ParB domain-containing protein	NA
UHGV-2172430_17	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-2172430_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2172430_17	Pfam	PF12961	NA	DUF3850
UHGV-2172430_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2172430_17	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-2172430_18	PHROG	phrog_15982	NA	unknown function
UHGV-2172430_18	UniRef90	UniRef90_UPI0002FBCBB1	NA	NA
UHGV-2172430_18	eggNOG-mapper	411468.CLOSCI_01480	NA	NA
UHGV-2172430_18	Pfam	PF12961	NA	DUF3850
UHGV-2172430_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2172430_18	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-2172430_19	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-2172430_19	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-2172430_19	UniRef90	UniRef90_A0A373S7Q8	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-2172430_19	eggNOG-mapper	411468.CLOSCI_01481	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-2172430_19	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-2172430_19	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-2172430_19	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-2172430_20	PHROG	phrog_34936	NA	unknown function
UHGV-2172430_20	eggNOG-mapper	742741.HMPREF9475_00416	NA	NA
UHGV-2172430_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2172430_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2172430_22	UniRef90	UniRef90_A0A3R5XI83	Single-stranded DNA-binding protein	NA
UHGV-2172430_22	eggNOG-mapper	411468.CLOSCI_01483	Single-strand binding protein family	NA
UHGV-2172430_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2172430_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2172430_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2172430_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2172430_22	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2172430_23	PHROG	phrog_36526	NA	unknown function
UHGV-2172430_23	eggNOG-mapper	742741.HMPREF9475_00418	NA	NA
UHGV-2172430_24	PHROG	phrog_1558	NA	unknown function
UHGV-2172430_24	eggNOG-mapper	742741.HMPREF9475_00419	NA	NA
UHGV-2172430_24	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-2172430_25	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2172430_25	UniRef90	UniRef90_B0NDF8	HNH endonuclease domain protein	NA
UHGV-2172430_25	eggNOG-mapper	411468.CLOSCI_01486	NA	NA
UHGV-2172430_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2172430_26	UniRef90	UniRef90_A0A414EC99	Phage terminase small subunit P27 family	NA
UHGV-2172430_26	eggNOG-mapper	411468.CLOSCI_01487	Phage terminase, small subunit	NA
UHGV-2172430_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2172430_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2172430_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2172430_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2172430_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2172430_27	UniRef90	UniRef90_A0A174ZPG1	Phage terminase-like protein, large subunit	NA
UHGV-2172430_27	eggNOG-mapper	411468.CLOSCI_01488	Phage Terminase	NA
UHGV-2172430_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2172430_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2172430_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2172430_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2172430_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-2172430_28	UniRef90	UniRef90_A0A412Q229	Phage portal protein	NA
UHGV-2172430_28	eggNOG-mapper	411468.CLOSCI_01489	Phage portal protein	NA
UHGV-2172430_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2172430_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2172430_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2172430_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2172430_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2172430_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2172430_29	UniRef90	UniRef90_A0A1C5T576	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2172430_29	eggNOG-mapper	742741.HMPREF9475_00424	Clp protease	NA
UHGV-2172430_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2172430_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2172430_29	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2172430_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-2172430_30	UniRef90	UniRef90_A0A174ZQ75	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2172430_30	eggNOG-mapper	411468.CLOSCI_01491	Phage capsid family	NA
UHGV-2172430_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2172430_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2172430_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2172430_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2172430_31	UniRef90	UniRef90_A0A412Q2I2	Phage gp6-like head-tail connector protein	NA
UHGV-2172430_31	eggNOG-mapper	411468.CLOSCI_01492	NA	NA
UHGV-2172430_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2172430_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2172430_32	PHROG	phrog_25	head closure Hc1	connector
UHGV-2172430_32	UniRef90	UniRef90_A0A412Q2M1	Phage head-tail joining protein	NA
UHGV-2172430_32	eggNOG-mapper	742741.HMPREF9475_00427	Phage head-tail joining protein	NA
UHGV-2172430_32	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2172430_32	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2172430_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2172430_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2172430_33	UniRef90	UniRef90_B0NDG6	Phage protein, HK97 gp10 family	NA
UHGV-2172430_33	eggNOG-mapper	411468.CLOSCI_01494	Phage protein, HK97 gp10 family	NA
UHGV-2172430_33	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2172430_33	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-2172430_34	PHROG	phrog_78	tail terminator	connector
UHGV-2172430_34	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-2172430_34	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2172430_35	PHROG	phrog_88	major tail protein	tail
UHGV-2172430_35	UniRef90	UniRef90_A0A412Q217	Major tail protein	NA
UHGV-2172430_35	eggNOG-mapper	411468.CLOSCI_01496	phage major tail protein, phi13 family	NA
UHGV-2172430_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2172430_35	COG	COG5492	NA	NA
UHGV-2172430_35	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2172430_36	PHROG	phrog_13494	NA	unknown function
UHGV-2172430_36	eggNOG-mapper	411468.CLOSCI_01497	NA	NA
UHGV-2172430_36	Structural annotation	PF20378	NA	NA
UHGV-2172430_37	PHROG	phrog_25901	NA	unknown function
UHGV-2172430_37	eggNOG-mapper	411468.CLOSCI_01498	NA	NA
UHGV-2172430_37	Structural annotation	PF10109	NA	NA
UHGV-2172430_38	KOfam	K16808	NUMA1; nuclear mitotic apparatus protein 1	NA
UHGV-2172430_38	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2172430_38	UniRef90	UniRef90_A0A350S489	PhageMin_Tail domain-containing protein	NA
UHGV-2172430_38	eggNOG-mapper	742741.HMPREF9475_00433	Phage tail tape measure protein, TP901 family	NA
UHGV-2172430_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2172430_38	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-2172430_38	Structural annotation	PF10145, PF05384, TIGR01760, NF006545, COG5280	NA	NA
UHGV-2172430_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2172430_39	UniRef90	UniRef90_UPI001D05C493	phage tail family protein	NA
UHGV-2172430_39	eggNOG-mapper	411459.RUMOBE_01724	phage tail	NA
UHGV-2172430_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-2172430_39	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-2172430_40	PHROG	phrog_18110	NA	unknown function
UHGV-2172430_40	UniRef90	UniRef90_A0A373S6M8	Prophage_tail domain-containing protein	NA
UHGV-2172430_40	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-2172430_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2172430_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2172430_40	COG	COG4926	Phage-related protein	NA
UHGV-2172430_40	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-2172430_42	PHROG	phrog_31398	NA	unknown function
UHGV-2172430_42	UniRef90	UniRef90_A0A1C6JQX6	BppU_N domain-containing protein	NA
UHGV-2172430_42	eggNOG-mapper	411459.RUMOBE_01721	NA	NA
UHGV-2172430_42	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2172430_42	Structural annotation	PF10651, NF033814, COG2372	NA	NA
UHGV-2172430_44	UniRef90	UniRef90_A0A414EC92	SH3 domain-containing protein	NA
UHGV-2172430_45	PHROG	phrog_5302	tail protein	tail
UHGV-2172430_45	eggNOG-mapper	411468.CLOSCI_01504	NA	NA
UHGV-2172430_45	Structural annotation	COG1262	NA	NA
UHGV-2172430_46	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2172430_46	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2172430_46	UniRef90	UniRef90_UPI001EDD71BD	RNA-directed DNA polymerase	NA
UHGV-2172430_46	eggNOG-mapper	742741.HMPREF9475_00439	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2172430_46	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2172430_46	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2172430_46	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2172430_47	PHROG	phrog_134	NA	unknown function
UHGV-2172430_47	UniRef90	UniRef90_UPI001D0857EC	XkdX family protein	NA
UHGV-2172430_47	eggNOG-mapper	742741.HMPREF9475_00440	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-2172430_47	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2172430_47	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-2172430_47	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2172430_48	PHROG	phrog_29601	NA	unknown function
UHGV-2172430_48	eggNOG-mapper	411468.CLOSCI_01508	NA	NA
UHGV-2172430_49	PHROG	phrog_1863	NA	unknown function
UHGV-2172430_49	eggNOG-mapper	742741.HMPREF9475_00442	NA	NA
UHGV-2172430_50	PHROG	phrog_18218	NA	unknown function
UHGV-2172430_50	UniRef90	UniRef90_R6U590	Ribonuclease S-4	NA
UHGV-2172430_50	eggNOG-mapper	411459.RUMOBE_00910	NA	NA
UHGV-2172430_51	KOfam	K07273	acm; lysozyme	NA
UHGV-2172430_51	PHROG	phrog_291	endolysin	lysis
UHGV-2172430_51	UniRef90	UniRef90_A0A3R6RNG6	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-2172430_51	eggNOG-mapper	411474.COPEUT_02639	hydrolase, family 25	NA
UHGV-2172430_51	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2172430_51	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2172430_51	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2172430_51	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2172430_52	PHROG	phrog_33061	NA	unknown function
UHGV-2172430_52	eggNOG-mapper	411468.CLOSCI_01514	NA	NA
UHGV-2172430_52	Structural annotation	PF19087	NA	NA
UHGV-2172430_53	eggNOG-mapper	411474.COPEUT_02193	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family	NA
UHGV-2172430_53	COG	COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	NA