UHGV-2172593

Genome information

Genome length 32,782 bps

CDS count 46

Completeness 94.88% (high-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-2172593
vOTU ID	vOTU-074891
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029996\|Ga0245029_100029\|provirus_156249_189030
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.88% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.57
Jumbo phage	No

Genome content
Genome length	32,782 bps
GC content	45.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	95.34%
Average CDS length	682.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2172593_1	KOfam	K14059	int; integrase	NA
UHGV-2172593_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2172593_1	UniRef90	UniRef90_A0A374HXT9	Site-specific integrase	NA
UHGV-2172593_1	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-2172593_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2172593_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2172593_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2172593_2	KOfam	K03763	polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]	NA
UHGV-2172593_2	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2172593_2	UniRef90	UniRef90_A0A373VNA0	Exonuclease domain-containing protein	NA
UHGV-2172593_2	eggNOG-mapper	877424.ATWC01000001_gene2107	EXOIII	NA
UHGV-2172593_2	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2172593_2	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2172593_2	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-2172593_2	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-2172593_3	PHROG	phrog_20936	NA	unknown function
UHGV-2172593_3	UniRef90	UniRef90_A0A374E958	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2172593_3	eggNOG-mapper	861450.HMPREF0080_02020	NA	NA
UHGV-2172593_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2172593_3	Structural annotation	PF06114	NA	NA
UHGV-2172593_4	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-2172593_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2172593_4	UniRef90	UniRef90_A0A373VPW9	XRE family transcriptional regulator	NA
UHGV-2172593_4	eggNOG-mapper	1304866.K413DRAFT_3003	addiction module antidote protein HigA	NA
UHGV-2172593_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2172593_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2172593_4	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2172593_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2172593_5	UniRef90	UniRef90_A0A373VQ70	XRE family transcriptional regulator	NA
UHGV-2172593_5	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2172593_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2172593_6	PHROG	phrog_14088	NA	unknown function
UHGV-2172593_6	UniRef90	UniRef90_A0A374HW23	Carboxypeptidase	NA
UHGV-2172593_6	eggNOG-mapper	626523.GCWU000342_01045	NA	NA
UHGV-2172593_7	Structural annotation	MF_00273	NA	NA
UHGV-2172593_12	PHROG	phrog_38338	NA	unknown function
UHGV-2172593_12	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2172593_12	eggNOG-mapper	641112.ACOK01000073_gene2869	NA	NA
UHGV-2172593_13	PHROG	phrog_8470	NA	unknown function
UHGV-2172593_13	UniRef90	UniRef90_UPI0019175B9C	PcfJ domain-containing protein	NA
UHGV-2172593_13	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-2172593_13	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2172593_13	Structural annotation	PF14284	NA	NA
UHGV-2172593_14	PHROG	phrog_15609	NA	unknown function
UHGV-2172593_14	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-2172593_14	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-2172593_14	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2172593_15	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2172593_15	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-2172593_15	eggNOG-mapper	881621.LIV_2167	Siphovirus Gp157	NA
UHGV-2172593_15	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2172593_15	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2172593_16	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2172593_16	UniRef90	UniRef90_A0A373VPJ3	ATP-binding protein (Fragment)	NA
UHGV-2172593_16	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-2172593_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-2172593_16	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2172593_17	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2172593_17	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2172593_17	UniRef90	UniRef90_A0A356CZA9	Helicase	NA
UHGV-2172593_17	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-2172593_17	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2172593_17	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2172593_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2172593_17	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2172593_17	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2172593_18	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2172593_18	UniRef90	UniRef90_A0A373SNE0	VRR-NUC domain-containing protein	NA
UHGV-2172593_18	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-2172593_18	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2172593_18	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-2172593_19	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2172593_19	UniRef90	UniRef90_A0A373SL44	NA	NA
UHGV-2172593_19	eggNOG-mapper	1423807.BACO01000050_gene1454	NA	NA
UHGV-2172593_19	Pfam	PF05037	NA	DUF669
UHGV-2172593_19	Structural annotation	PF05037, NF004948	NA	NA
UHGV-2172593_20	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2172593_20	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2172593_20	UniRef90	UniRef90_A0A356CZ91	DNA primase	NA
UHGV-2172593_20	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-2172593_20	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2172593_20	Pfam	PF19263	NA	DUF5906
UHGV-2172593_20	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2172593_20	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2172593_20	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2172593_20	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-2172593_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2172593_22	UniRef90	UniRef90_A0A371AT86	NA	NA
UHGV-2172593_23	PHROG	phrog_104	portal protein	head and packaging
UHGV-2172593_23	UniRef90	UniRef90_A0A373VNC1	Phage portal protein	NA
UHGV-2172593_23	eggNOG-mapper	1280698.AUJS01000007_gene1033	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2172593_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2172593_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2172593_24	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-2172593_24	UniRef90	UniRef90_R6D1F4	Ntox50 domain-containing protein	NA
UHGV-2172593_24	eggNOG-mapper	1280698.AUJS01000007_gene1034	cell adhesion	NA
UHGV-2172593_24	COG	COG2369	NA	NA
UHGV-2172593_25	eggNOG-mapper	936596.HMPREF1495_2378	NA	NA
UHGV-2172593_27	PHROG	phrog_17688	NA	unknown function
UHGV-2172593_27	UniRef90	UniRef90_A0A374HI97	Terminase	NA
UHGV-2172593_27	eggNOG-mapper	936375.HMPREF1152_0677	phage terminase, large subunit	NA
UHGV-2172593_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2172593_27	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-2172593_28	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-2172593_28	UniRef90	UniRef90_A0A373VN88	NA	NA
UHGV-2172593_28	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-2172593_28	Pfam	PF14265	NA	DUF4355
UHGV-2172593_28	Structural annotation	PF14265	NA	NA
UHGV-2172593_29	PHROG	phrog_32396	NA	unknown function
UHGV-2172593_29	UniRef90	UniRef90_A0A374HI43	Phage major capsid protein	NA
UHGV-2172593_29	eggNOG-mapper	1231377.C426_1737	Phage capsid family	NA
UHGV-2172593_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2172593_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2172593_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2172593_30	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2172593_30	UniRef90	UniRef90_R6C7E8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2172593_30	eggNOG-mapper	936375.HMPREF1152_0681	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2172593_30	Pfam	PF09355	NA	Phage_Gp19
UHGV-2172593_30	Structural annotation	PF09355	NA	NA
UHGV-2172593_31	PHROG	phrog_501	head closure Hc1	connector
UHGV-2172593_31	UniRef90	UniRef90_R6CEU4	NA	NA
UHGV-2172593_31	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-2172593_31	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2172593_32	PHROG	phrog_387	neck protein	connector
UHGV-2172593_32	UniRef90	UniRef90_A0A0E4H9B2	NA	NA
UHGV-2172593_32	eggNOG-mapper	883110.HMPREF9260_00655	NA	NA
UHGV-2172593_33	PHROG	phrog_123	tail terminator	connector
UHGV-2172593_33	UniRef90	UniRef90_F3MWA9	NA	NA
UHGV-2172593_33	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-2172593_33	Structural annotation	PF06141	NA	NA
UHGV-2172593_34	PHROG	phrog_117	major tail protein	tail
UHGV-2172593_34	UniRef90	UniRef90_A0A374HI29	Phage tail protein	NA
UHGV-2172593_34	eggNOG-mapper	875454.BAEW01000017_gene1590	domain, Protein	NA
UHGV-2172593_34	COG	COG5492	NA	NA
UHGV-2172593_34	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2172593_35	PHROG	phrog_1526	NA	unknown function
UHGV-2172593_35	UniRef90	UniRef90_A0A0E4H642	NA	NA
UHGV-2172593_35	eggNOG-mapper	1423775.BAMN01000011_gene597	NA	NA
UHGV-2172593_36	PHROG	phrog_1633	NA	unknown function
UHGV-2172593_36	UniRef90	UniRef90_A0A139QHL2	NA	NA
UHGV-2172593_36	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-2172593_36	Pfam	PF17318	NA	DUF5361
UHGV-2172593_36	Structural annotation	PF17318	NA	NA
UHGV-2172593_37	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2172593_37	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-2172593_37	COG	COG1511	NA	NA
UHGV-2172593_38	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2172593_38	UniRef90	UniRef90_A0A2N0ZMV0	Phage tail protein	NA
UHGV-2172593_38	eggNOG-mapper	1414720.CBYM010000001_gene708	PFAM Phage tail protein	NA
UHGV-2172593_38	COG	COG4722	Phage-related protein YomH	NA
UHGV-2172593_38	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-2172593_39	PHROG	phrog_3558	tail protein	tail
UHGV-2172593_39	UniRef90	UniRef90_A0A374HI53	Prophage_tail domain-containing protein	NA
UHGV-2172593_39	eggNOG-mapper	641112.ACOK01000073_gene2906	Prophage endopeptidase tail	NA
UHGV-2172593_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2172593_39	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2172593_39	COG	COG4926	Phage-related protein	NA
UHGV-2172593_39	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2172593_40	Structural annotation	PF21295, NF012201	NA	NA
UHGV-2172593_41	eggNOG-mapper	877411.JMMA01000002_gene2461	NA	NA
UHGV-2172593_41	Structural annotation	PF10651	NA	NA
UHGV-2172593_42	KOfam	K05636	LAMB1; laminin, beta 1	NA
UHGV-2172593_42	Structural annotation	PF10651	NA	NA
UHGV-2172593_44	PHROG	phrog_134	NA	unknown function
UHGV-2172593_44	UniRef90	UniRef90_A0A374HLL3	XkdX family protein	NA
UHGV-2172593_44	eggNOG-mapper	1298920.KI911353_gene4834	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-2172593_44	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2172593_44	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2172593_45	PHROG	phrog_199	holin	lysis
UHGV-2172593_45	UniRef90	UniRef90_A0A373XMP0	Holin	NA
UHGV-2172593_45	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-2172593_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2172593_45	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2172593_45	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2172593_45	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2172593_46	PHROG	phrog_297	holin	lysis
UHGV-2172593_46	UniRef90	UniRef90_A0A356CY82	Peptidase C51 domain-containing protein	NA
UHGV-2172593_46	eggNOG-mapper	1160721.RBI_II00521	hydrolase, family 25	NA
UHGV-2172593_46	Pfam	PF05257	CHAP domain	CHAP
UHGV-2172593_46	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2172593_46	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA