UHGV-2173430

Genome information

Genome length 40,327 bps

CDS count 51

Completeness 100.00% (complete)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-2173430
vOTU ID	vOTU-001645
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029815\|Ga0244882_1000884
BioSample	SAMEA3708726
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.64
Jumbo phage	No

Genome content
Genome length	40,327 bps
GC content	43.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	94.04%
Average CDS length	748.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2173430_1	PHROG	phrog_21765	NA	unknown function
UHGV-2173430_1	eggNOG-mapper	1235792.C808_05353	NA	NA
UHGV-2173430_2	PHROG	phrog_24267	NA	unknown function
UHGV-2173430_2	UniRef90	UniRef90_A0A0F7L5Y2	Phage capsid protein	NA
UHGV-2173430_2	eggNOG-mapper	1203602.HMPREF1527_01080	NA	NA
UHGV-2173430_4	PHROG	phrog_937	hemolysin	other
UHGV-2173430_5	PHROG	phrog_443	holin	lysis
UHGV-2173430_5	UniRef90	UniRef90_UPI001BA9F6DF	holin	NA
UHGV-2173430_5	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-2173430_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2173430_5	Structural annotation	PF16945	NA	NA
UHGV-2173430_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2173430_6	PHROG	phrog_435	endolysin	lysis
UHGV-2173430_6	UniRef90	UniRef90_A0A416INH6	MurNAc-LAA domain-containing protein	NA
UHGV-2173430_6	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-2173430_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2173430_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2173430_6	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-2173430_7	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2173430_10	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-2173430_11	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2173430_13	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2173430_13	PHROG	phrog_95	integrase	integration and excision
UHGV-2173430_13	UniRef90	UniRef90_A0A1C5MEA8	Transposase and inactivated derivatives	NA
UHGV-2173430_13	eggNOG-mapper	1235798.C817_01900	Resolvase, N terminal domain	NA
UHGV-2173430_13	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2173430_13	Pfam	PF07508	Recombinase	Recombinase
UHGV-2173430_13	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2173430_13	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2173430_13	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-2173430_16	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2173430_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2173430_16	UniRef90	UniRef90_A0A417W960	XRE family transcriptional regulator	NA
UHGV-2173430_16	eggNOG-mapper	1235793.C809_03587	Helix-turn-helix XRE-family like proteins	NA
UHGV-2173430_16	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2173430_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2173430_16	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2173430_23	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2173430_23	PHROG	phrog_17417	NA	unknown function
UHGV-2173430_23	UniRef90	UniRef90_A0A416INU5	Cell wall hydrolase	NA
UHGV-2173430_23	eggNOG-mapper	742733.HMPREF9469_05073	Cell Wall Hydrolase	NA
UHGV-2173430_23	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-2173430_23	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-2173430_23	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-2173430_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2173430_24	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-2173430_24	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2173430_25	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2173430_25	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2173430_25	UniRef90	UniRef90_A0A3R6KTE4	RNase H type-1 domain-containing protein	NA
UHGV-2173430_25	eggNOG-mapper	643648.Slip_0653	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2173430_25	Pfam	PF00075	RNase H	RNase_H
UHGV-2173430_25	COG	COG0328	Ribonuclease HI	NA
UHGV-2173430_25	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2173430_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2173430_26	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2173430_26	UniRef90	UniRef90_A0A3R6P3N3	ParB/RepB/Spo0J family partition protein	NA
UHGV-2173430_26	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-2173430_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2173430_26	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-2173430_26	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2173430_26	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-2173430_27	eggNOG-mapper	1304866.K413DRAFT_4636	NA	NA
UHGV-2173430_27	Structural annotation	PF17457	NA	NA
UHGV-2173430_28	PHROG	phrog_21026	NA	unknown function
UHGV-2173430_30	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2173430_30	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2173430_30	UniRef90	UniRef90_A0A416INX1	PAPS_reduct domain-containing protein	NA
UHGV-2173430_30	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2173430_30	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2173430_30	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2173430_30	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-2173430_32	PHROG	phrog_25176	NA	unknown function
UHGV-2173430_32	eggNOG-mapper	397290.C810_01476	NA	NA
UHGV-2173430_33	Pfam	PF14359	NA	DUF4406
UHGV-2173430_34	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-2173430_34	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-2173430_35	Structural annotation	NF011508	NA	NA
UHGV-2173430_37	UniRef90	UniRef90_A0A2Y9BMC9	DNA-binding Xre family transcriptional regulator	NA
UHGV-2173430_37	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2173430_38	PHROG	phrog_2164	NA	unknown function
UHGV-2173430_38	eggNOG-mapper	1033733.CAEK01000007_gene1672	NA	NA
UHGV-2173430_39	PHROG	phrog_2412	NA	unknown function
UHGV-2173430_39	UniRef90	UniRef90_A0A3A4N1N3	Stress-induced protein	NA
UHGV-2173430_39	eggNOG-mapper	120574.Q8SBI2_9CAUD	NA	NA
UHGV-2173430_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2173430_40	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2173430_40	UniRef90	UniRef90_A0A1I0BGR2	Terminase-like family protein	NA
UHGV-2173430_40	eggNOG-mapper	411483.FAEPRAA2165_01044	Terminase-like family	NA
UHGV-2173430_40	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2173430_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-2173430_40	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2173430_41	PHROG	phrog_156	portal protein	head and packaging
UHGV-2173430_41	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-2173430_41	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-2173430_41	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-2173430_42	KOfam	K07584	NA	NA
UHGV-2173430_42	PHROG	phrog_4478	peptidase	other
UHGV-2173430_42	UniRef90	UniRef90_A0A650C9F1	Ribosomal-processing cysteine protease Prp	NA
UHGV-2173430_42	eggNOG-mapper	1605.Lani381_0911	Cysteine protease Prp	NA
UHGV-2173430_42	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2173430_42	COG	COG2868	NA	NA
UHGV-2173430_42	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2173430_43	PHROG	phrog_13908	NA	unknown function
UHGV-2173430_43	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-2173430_44	PHROG	phrog_1357	major head protein	head and packaging
UHGV-2173430_44	UniRef90	UniRef90_A0A1I0BH03	Major capsid protein, N4-gp56 family	NA
UHGV-2173430_44	eggNOG-mapper	748224.HMPREF9436_02545	NA	NA
UHGV-2173430_44	Pfam	PF13252	NA	DUF4043
UHGV-2173430_44	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2173430_44	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2173430_46	PHROG	phrog_12105	NA	unknown function
UHGV-2173430_46	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-2173430_47	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-2173430_47	eggNOG-mapper	1321782.HMPREF1986_00351	NA	NA
UHGV-2173430_47	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-2173430_49	PHROG	phrog_21397	NA	unknown function
UHGV-2173430_49	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-2173430_50	PHROG	phrog_22978	NA	unknown function
UHGV-2173430_50	UniRef90	UniRef90_A0A1I0BI48	LPD23 domain-containing protein	NA
UHGV-2173430_50	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-2173430_50	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-2173430_51	PHROG	phrog_1419	tail protein	tail
UHGV-2173430_51	Pfam	PF10651	BppU N-terminal domain	BppU_N