UHGV-2173657

Genome information

vOTU vOTU-019693

Genome length 27,786 bps

CDS count 46

Completeness 79.76% (medium-quality)

geNomad score 0.9695

Prediction confidence Confident

Genome information
Genome ID	UHGV-2173657
vOTU ID	vOTU-019693
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300030030\|Ga0245278_100803\|provirus_2_34080
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9695
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.8
Jumbo phage	No

Genome content
Genome length	27,786 bps
GC content	56.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.29%
Average CDS length	560.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2173657_2	Pfam	PF18938	Atypical Rib domain	aRib
UHGV-2173657_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2173657_2	Structural annotation	PF20622	NA	NA
UHGV-2173657_3	PHROG	phrog_6616	tail protein	tail
UHGV-2173657_3	Structural annotation	PF13550, PF09931, NF033848, COG3500	NA	NA
UHGV-2173657_4	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2173657_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2173657_5	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2173657_5	eggNOG-mapper	1449050.JNLE01000003_gene3881	domain protein	NA
UHGV-2173657_5	COG	COG1511	NA	NA
UHGV-2173657_6	PHROG	phrog_706	NA	unknown function
UHGV-2173657_6	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-2173657_6	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2173657_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2173657_6	Structural annotation	PF06854	NA	NA
UHGV-2173657_7	PHROG	phrog_11299	NA	unknown function
UHGV-2173657_7	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2173657_7	Structural annotation	PF10666	NA	NA
UHGV-2173657_8	PHROG	phrog_3099	NA	unknown function
UHGV-2173657_8	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-2173657_8	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-2173657_9	PHROG	phrog_3266	tail completion	connector
UHGV-2173657_9	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2173657_9	Structural annotation	PF12691	NA	NA
UHGV-2173657_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2173657_10	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-2173657_10	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2173657_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2173657_10	Structural annotation	PF11114	NA	NA
UHGV-2173657_11	PHROG	phrog_3366	NA	unknown function
UHGV-2173657_11	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2173657_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2173657_12	eggNOG-mapper	33035.JPJF01000106_gene3131	NA	NA
UHGV-2173657_13	PHROG	phrog_267	major head protein	head and packaging
UHGV-2173657_13	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-2173657_13	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2173657_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2173657_14	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-2173657_14	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-2173657_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2173657_14	Structural annotation	PF06810	NA	NA
UHGV-2173657_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2173657_15	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-2173657_15	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-2173657_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2173657_15	COG	COG2369	NA	NA
UHGV-2173657_15	Structural annotation	PF06152	NA	NA
UHGV-2173657_16	PHROG	phrog_533	portal protein	head and packaging
UHGV-2173657_16	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-2173657_16	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2173657_16	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2173657_17	PHROG	phrog_1233	NA	unknown function
UHGV-2173657_17	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-2173657_17	Structural annotation	PF13058	NA	NA
UHGV-2173657_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2173657_18	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2173657_18	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-2173657_18	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2173657_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2173657_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2173657_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2173657_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2173657_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-2173657_18	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2173657_19	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2173657_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2173657_20	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-2173657_20	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-2173657_20	Pfam	PF07374	NA	DUF1492
UHGV-2173657_20	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2173657_22	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2173657_22	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-2173657_22	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-2173657_22	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-2173657_23	PHROG	phrog_5781	NA	unknown function
UHGV-2173657_23	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-2173657_23	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-2173657_23	Pfam	PF14359	NA	DUF4406
UHGV-2173657_23	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2173657_23	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2173657_24	PHROG	phrog_1029	NA	unknown function
UHGV-2173657_24	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-2173657_24	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2173657_25	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2173657_25	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-2173657_25	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-2173657_27	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-2173657_28	KOfam	K03700	recU; recombination protein U	NA
UHGV-2173657_28	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2173657_28	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-2173657_28	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-2173657_28	Pfam	PF03838	Recombination protein U	RecU
UHGV-2173657_28	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-2173657_28	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2173657_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2173657_29	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-2173657_29	Structural annotation	PF21578	NA	NA
UHGV-2173657_32	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-2173657_32	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2173657_32	UniRef90	UniRef90_UPI0018F33479	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-2173657_32	eggNOG-mapper	268407.PWYN_12320	AbrB family transcriptional regulator	NA
UHGV-2173657_32	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-2173657_32	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-2173657_32	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-2173657_32	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-2173657_33	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-2173657_34	PHROG	phrog_585	NA	unknown function
UHGV-2173657_34	Pfam	PF10711	NA	DUF2513
UHGV-2173657_35	PHROG	phrog_750	NA	unknown function
UHGV-2173657_35	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2173657_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2173657_39	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2173657_39	UniRef90	UniRef90_K1UM29	Helix-turn-helix domain protein (Fragment)	NA
UHGV-2173657_39	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-2173657_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2173657_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2173657_39	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2173657_41	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2173657_41	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-2173657_41	eggNOG-mapper	1120971.AUCA01000073_gene2914	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2173657_41	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2173657_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2173657_41	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2173657_43	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2173657_43	PHROG	phrog_95	integrase	integration and excision
UHGV-2173657_43	UniRef90	UniRef90_A0A6N3GHP2	DNA-invertase hin	NA
UHGV-2173657_43	eggNOG-mapper	1297617.JPJD01000037_gene3107	Resolvase, N terminal domain	NA
UHGV-2173657_43	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2173657_43	Pfam	PF07508	Recombinase	Recombinase
UHGV-2173657_43	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2173657_43	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2173657_43	Structural annotation	PF07508, NF041201	NA	NA
UHGV-2173657_44	eggNOG-mapper	1297617.JPJD01000037_gene3106	NA	NA
UHGV-2173657_46	PHROG	phrog_11138	NA	unknown function
UHGV-2173657_46	UniRef90	UniRef90_R5EAN1	Sigma70_r4_2 domain-containing protein	NA
UHGV-2173657_46	eggNOG-mapper	1297617.JPJD01000037_gene3105	DNA-templated transcription, initiation	NA
UHGV-2173657_46	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2173657_46	Structural annotation	PF08281, MF_00962, TIGR02479, COG1595	NA	NA