UHGV-2174306

Genome information

Genome length 38,184 bps

CDS count 45

Completeness 95.08% (high-quality)

geNomad score 0.9689

Prediction confidence Confident

Genome information
Genome ID	UHGV-2174306
vOTU ID	vOTU-011361
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029819\|Ga0245024_100699\|provirus_2999_41182
BioSample	SAMEA3708868
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.08% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9689
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.81
Jumbo phage	No

Genome content
Genome length	38,184 bps
GC content	41.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.16%
Average CDS length	784.20 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2174306_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2174306_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2174306_4	UniRef90	UniRef90_UPI001F485D98	helix-turn-helix transcriptional regulator	NA
UHGV-2174306_4	eggNOG-mapper	1347393.HG726026_gene2595	Peptidase S24-like	NA
UHGV-2174306_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2174306_4	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2174306_4	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2174306_5	PHROG	phrog_6486	NA	unknown function
UHGV-2174306_5	UniRef90	UniRef90_UPI000E9613FB	helix-turn-helix transcriptional regulator	NA
UHGV-2174306_5	eggNOG-mapper	411901.BACCAC_01209	BRO family, N-terminal domain	NA
UHGV-2174306_5	COG	COG3617	Prophage antirepressor	NA
UHGV-2174306_5	Structural annotation	PF03374, PF08346, COG3645, COG3561	NA	NA
UHGV-2174306_6	UniRef90	UniRef90_UPI0004B91365	helix-turn-helix domain-containing protein	NA
UHGV-2174306_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2174306_6	COG	COG0789	DNA-binding transcriptional regulator, MerR family	NA
UHGV-2174306_7	eggNOG-mapper	272559.BF9343_2321	NA	NA
UHGV-2174306_11	PHROG	phrog_35955	NA	unknown function
UHGV-2174306_11	eggNOG-mapper	435591.BDI_0859	DnaD domain protein	NA
UHGV-2174306_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2174306_12	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2174306_12	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2174306_12	UniRef90	UniRef90_E5CG76	DNA helicase	NA
UHGV-2174306_12	eggNOG-mapper	1077285.AGDG01000032_gene4173	Participates in initiation and elongation during chromosome replication	NA
UHGV-2174306_12	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2174306_12	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2174306_12	COG	COG0305	Replicative DNA helicase	NA
UHGV-2174306_12	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2174306_14	UniRef90	UniRef90_A0A496C6J9	Ribbon-helix-helix domain-containing protein	NA
UHGV-2174306_14	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-2174306_16	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2174306_16	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2174306_16	UniRef90	UniRef90_A0A412GGT3	HNH endonuclease	NA
UHGV-2174306_16	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-2174306_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2174306_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2174306_17	UniRef90	UniRef90_A0A139JUN9	NA	NA
UHGV-2174306_17	eggNOG-mapper	1268240.ATFI01000008_gene2008	NA	NA
UHGV-2174306_17	Pfam	PF16476	NA	DUF5053
UHGV-2174306_17	Structural annotation	PF16476	NA	NA
UHGV-2174306_18	UniRef90	UniRef90_A0A139JU77	Acyltransferase	NA
UHGV-2174306_19	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2174306_19	UniRef90	UniRef90_A0A412GGR3	Phage terminase small subunit P27 family	NA
UHGV-2174306_19	eggNOG-mapper	1268240.ATFI01000007_gene422	Phage terminase, small subunit	NA
UHGV-2174306_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2174306_19	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2174306_19	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2174306_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2174306_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2174306_20	UniRef90	UniRef90_A0A3E5G6E2	Terminase large subunit	NA
UHGV-2174306_20	eggNOG-mapper	1268240.ATFI01000007_gene421	Phage Terminase	NA
UHGV-2174306_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2174306_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2174306_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2174306_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2174306_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-2174306_21	UniRef90	UniRef90_A0A412GGJ4	Phage portal protein	NA
UHGV-2174306_21	eggNOG-mapper	1268240.ATFI01000007_gene420	Phage portal protein	NA
UHGV-2174306_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2174306_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2174306_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2174306_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2174306_22	KOfam	K06904	NA	NA
UHGV-2174306_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2174306_22	UniRef90	UniRef90_A0A412GGS6	HK97 family phage prohead protease	NA
UHGV-2174306_22	eggNOG-mapper	1268240.ATFI01000007_gene419	Caudovirus prohead serine protease	NA
UHGV-2174306_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2174306_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2174306_22	COG	COG3740	Phage head maturation protease	NA
UHGV-2174306_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2174306_23	PHROG	phrog_617	major head protein	head and packaging
UHGV-2174306_23	UniRef90	UniRef90_A0A412GGN2	Phage major capsid protein	NA
UHGV-2174306_23	eggNOG-mapper	1268240.ATFI01000007_gene418	Phage capsid family	NA
UHGV-2174306_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2174306_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2174306_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2174306_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2174306_24	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2174306_24	UniRef90	UniRef90_A0A412GGH5	Phage gp6-like head-tail connector protein	NA
UHGV-2174306_24	eggNOG-mapper	1268240.ATFI01000007_gene417	Phage gp6-like head-tail connector protein	NA
UHGV-2174306_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2174306_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2174306_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2174306_25	UniRef90	UniRef90_A0A412GGN5	Head-tail adaptor protein	NA
UHGV-2174306_25	eggNOG-mapper	1268240.ATFI01000007_gene416	Phage head-tail joining protein	NA
UHGV-2174306_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2174306_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2174306_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2174306_26	UniRef90	UniRef90_E2N7Z2	Putative phage protein, HK97 gp10 family	NA
UHGV-2174306_26	eggNOG-mapper	1268240.ATFI01000007_gene415	NA	NA
UHGV-2174306_26	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-2174306_27	UniRef90	UniRef90_A0A412GGS1	NA	NA
UHGV-2174306_27	eggNOG-mapper	1268240.ATFI01000007_gene414	NA	NA
UHGV-2174306_27	Structural annotation	PF11367, COG5003	NA	NA
UHGV-2174306_28	PHROG	phrog_1407	major tail protein	tail
UHGV-2174306_28	UniRef90	UniRef90_A0A449I4M1	Phage major tail protein 2	NA
UHGV-2174306_28	eggNOG-mapper	1268240.ATFI01000007_gene413	Phage tail tube protein	NA
UHGV-2174306_28	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2174306_29	eggNOG-mapper	1268240.ATFI01000007_gene412	NA	NA
UHGV-2174306_30	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-2174306_30	UniRef90	UniRef90_A0A139JU72	Tape measure domain protein	NA
UHGV-2174306_30	eggNOG-mapper	1268240.ATFI01000007_gene411	tape measure	NA
UHGV-2174306_30	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2174306_30	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2174306_30	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2174306_30	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2174306_31	eggNOG-mapper	1268240.ATFI01000007_gene410	NA	NA
UHGV-2174306_31	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-2174306_32	eggNOG-mapper	1122971.BAME01000151_gene6563	Phage minor structural protein	NA
UHGV-2174306_32	COG	COG4926	Phage-related protein	NA
UHGV-2174306_33	UniRef90	UniRef90_UPI000E4DD471	phage neck protein fibritin	NA
UHGV-2174306_33	eggNOG-mapper	1122931.AUAE01000005_gene3260	NA	NA
UHGV-2174306_33	Pfam	PF07921	Fibritin C-terminal region	Fibritin_C
UHGV-2174306_35	UniRef90	UniRef90_A0A414HV79	NA	NA
UHGV-2174306_35	eggNOG-mapper	411479.BACUNI_00733	NA	NA
UHGV-2174306_35	Pfam	PF14301	NA	DUF4376
UHGV-2174306_36	UniRef90	UniRef90_F3PDX9	Conserved domain protein	NA
UHGV-2174306_36	eggNOG-mapper	411479.BACUNI_00732	NA	NA
UHGV-2174306_36	Structural annotation	PF06197, COG3371	NA	NA
UHGV-2174306_37	UniRef90	UniRef90_A0A174UZM2	Holin family	NA
UHGV-2174306_37	eggNOG-mapper	1121100.JCM6294_559	NA	NA
UHGV-2174306_37	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2174306_37	Structural annotation	PF05105, NF035928, COG4824	NA	NA
UHGV-2174306_38	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2174306_38	PHROG	phrog_435	endolysin	lysis
UHGV-2174306_38	UniRef90	UniRef90_A0A412GGT2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2174306_38	eggNOG-mapper	411476.BACOVA_03951	COG NOG32858 non supervised orthologous group	NA
UHGV-2174306_38	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2174306_38	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2174306_38	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-2174306_39	eggNOG-mapper	1347393.HG726021_gene391	NA	NA
UHGV-2174306_40	UniRef90	UniRef90_A0A523YRT2	NA	NA
UHGV-2174306_40	Structural annotation	PF18929	NA	NA
UHGV-2174306_41	KOfam	K07039	NA	NA
UHGV-2174306_41	UniRef90	UniRef90_UPI001E3816E0	SEC-C domain-containing protein	NA
UHGV-2174306_41	eggNOG-mapper	1408324.JNJK01000006_gene1333	SEC-C motif	NA
UHGV-2174306_41	Pfam	PF13975	gag-polyprotein putative aspartyl protease	gag-asp_proteas
UHGV-2174306_41	Pfam	PF02810	SEC-C motif	SEC-C
UHGV-2174306_41	COG	COG3012	NA	NA
UHGV-2174306_41	Structural annotation	PF13650, TIGR03698, COG5550	NA	NA
UHGV-2174306_43	UniRef90	UniRef90_UPI001C37A7A8	bacteriophage abortive infection AbiH family protein	NA
UHGV-2174306_43	eggNOG-mapper	999419.HMPREF1077_00265	Bacteriophage abortive infection AbiH	NA
UHGV-2174306_43	Pfam	PF14253	Bacteriophage abortive infection AbiH	AbiH
UHGV-2174306_43	Structural annotation	PF14253	NA	NA
UHGV-2174306_44	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2174306_44	PHROG	phrog_1	integrase	integration and excision
UHGV-2174306_44	UniRef90	UniRef90_UPI0004B61A58	site-specific integrase	NA
UHGV-2174306_44	eggNOG-mapper	1347393.HG726026_gene2633	Arm DNA-binding domain	NA
UHGV-2174306_44	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-2174306_44	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2174306_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2174306_44	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2174306_44	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA