UHGV-2174362

Genome information

Genome length 35,967 bps

CDS count 53

Completeness 86.84% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-2174362
vOTU ID	vOTU-042184
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029844\|Ga0245276_1000288\|provirus_24992_60958
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.05
Jumbo phage	No

Genome content
Genome length	35,967 bps
GC content	42.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.59%
Average CDS length	639.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2174362_2	PHROG	phrog_2742	endolysin	lysis
UHGV-2174362_2	UniRef90	UniRef90_A0A845KJG7	MurNAc-LAA domain-containing protein	NA
UHGV-2174362_2	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2174362_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2174362_2	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-2174362_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2174362_2	Structural annotation	PF01520, TIGR02883, COG5492, COG0860	NA	NA
UHGV-2174362_3	PHROG	phrog_1129	holin	lysis
UHGV-2174362_3	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-2174362_3	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-2174362_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2174362_3	Structural annotation	PF06946	NA	NA
UHGV-2174362_4	PHROG	phrog_1009	NA	unknown function
UHGV-2174362_4	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-2174362_4	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-2174362_6	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-2174362_6	PHROG	phrog_9478	minor tail protein	tail
UHGV-2174362_6	UniRef90	UniRef90_UPI001C0193FC	phage tail protein	NA
UHGV-2174362_6	eggNOG-mapper	476272.RUMHYD_02865	NA	NA
UHGV-2174362_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2174362_6	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2174362_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2174362_6	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2174362_7	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2174362_7	UniRef90	UniRef90_UPI00156D6BD7	phage tail family protein	NA
UHGV-2174362_7	eggNOG-mapper	1235796.C815_00909	Phage tail protein	NA
UHGV-2174362_7	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2174362_7	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2174362_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-2174362_7	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-2174362_8	PHROG	phrog_19074	NA	unknown function
UHGV-2174362_8	UniRef90	UniRef90_A0A174PKR4	Phage-related protein	NA
UHGV-2174362_8	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-2174362_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2174362_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2174362_8	COG	COG5283	Phage-related tail protein	NA
UHGV-2174362_8	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2174362_9	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-2174362_9	UniRef90	UniRef90_F0YWR6	NA	NA
UHGV-2174362_9	eggNOG-mapper	556261.HMPREF0240_01278	NA	NA
UHGV-2174362_10	PHROG	phrog_183	tail chaperone protein	tail
UHGV-2174362_10	UniRef90	UniRef90_A0A174PQ19	NA	NA
UHGV-2174362_10	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-2174362_10	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-2174362_10	Structural annotation	PF12363	NA	NA
UHGV-2174362_11	PHROG	phrog_238	major tail protein	tail
UHGV-2174362_11	UniRef90	UniRef90_A0A173YN47	Phage major tail protein, TP901-1 family	NA
UHGV-2174362_11	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-2174362_11	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2174362_11	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2174362_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2174362_12	PHROG	phrog_176	tail terminator	connector
UHGV-2174362_12	UniRef90	UniRef90_UPI001D04E689	NA	NA
UHGV-2174362_12	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-2174362_12	Structural annotation	PF11367	NA	NA
UHGV-2174362_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2174362_13	UniRef90	UniRef90_UPI00156D85AA	HK97 gp10 family phage protein	NA
UHGV-2174362_13	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2174362_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2174362_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2174362_13	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2174362_14	PHROG	phrog_348	minor head protein	head and packaging
UHGV-2174362_14	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-2174362_14	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2174362_15	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2174362_15	UniRef90	UniRef90_A0A173ZES1	Phage gp6-like head-tail connector protein	NA
UHGV-2174362_15	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-2174362_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2174362_15	Structural annotation	PF05135	NA	NA
UHGV-2174362_16	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-2174362_16	UniRef90	UniRef90_UPI00189B7272	Rho termination protein	NA
UHGV-2174362_16	eggNOG-mapper	279808.SH2353	Rho termination factor, N-terminal domain	NA
UHGV-2174362_17	PHROG	phrog_544	major head protein	head and packaging
UHGV-2174362_17	eggNOG-mapper	476272.RUMHYD_02854	NA	NA
UHGV-2174362_17	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2174362_18	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2174362_18	UniRef90	UniRef90_A0A3E3JYM4	NA	NA
UHGV-2174362_18	eggNOG-mapper	1235792.C808_05338	NA	NA
UHGV-2174362_18	Pfam	PF14265	NA	DUF4355
UHGV-2174362_18	Structural annotation	PF14265	NA	NA
UHGV-2174362_19	KOfam	K07584	NA	NA
UHGV-2174362_19	PHROG	phrog_4478	peptidase	other
UHGV-2174362_19	UniRef90	UniRef90_A0A173ZDU8	Predicted ribosomal protein	NA
UHGV-2174362_19	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-2174362_19	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2174362_19	COG	COG2868	NA	NA
UHGV-2174362_19	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2174362_20	PHROG	phrog_1233	NA	unknown function
UHGV-2174362_20	eggNOG-mapper	1232453.BAIF02000011_gene3355	NA	NA
UHGV-2174362_22	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2174362_22	UniRef90	UniRef90_UPI001D03EE61	minor capsid protein	NA
UHGV-2174362_22	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2174362_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2174362_22	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2174362_22	COG	COG2369	NA	NA
UHGV-2174362_22	Structural annotation	PF04233, PF04002, TIGR01641, NF000642, COG2003, COG2369	NA	NA
UHGV-2174362_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-2174362_23	UniRef90	UniRef90_R9JSE7	SPP1 family phage portal protein	NA
UHGV-2174362_23	eggNOG-mapper	476272.RUMHYD_02846	Phage portal protein, SPP1 family	NA
UHGV-2174362_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2174362_23	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2174362_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-2174362_24	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2174362_24	UniRef90	UniRef90_UPI00046F67CE	terminase family protein	NA
UHGV-2174362_24	eggNOG-mapper	1232453.BAIF02000011_gene3352	NA	NA
UHGV-2174362_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2174362_24	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-2174362_25	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2174362_25	UniRef90	UniRef90_UPI001C3AC719	Helix-turn-helix domain-containing protein	NA
UHGV-2174362_25	eggNOG-mapper	1232453.BAIF02000011_gene3351	HNH endonuclease	NA
UHGV-2174362_25	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2174362_25	Structural annotation	PF07141	NA	NA
UHGV-2174362_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2174362_26	UniRef90	UniRef90_UPI0018988F04	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2174362_26	eggNOG-mapper	411462.DORLON_00800	NA	NA
UHGV-2174362_26	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2174362_26	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-2174362_27	PHROG	phrog_7024	NA	unknown function
UHGV-2174362_27	eggNOG-mapper	689781.AUJX01000031_gene121	NA	NA
UHGV-2174362_27	AcrCatalog	cluster_1398	NA	NA
UHGV-2174362_28	Structural annotation	PF21220, COG2771	NA	NA
UHGV-2174362_31	PHROG	phrog_24386	NA	unknown function
UHGV-2174362_31	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-2174362_31	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-2174362_33	Structural annotation	PF10400	NA	NA
UHGV-2174362_34	PHROG	phrog_7566	NA	unknown function
UHGV-2174362_34	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-2174362_35	PHROG	phrog_15077	NA	unknown function
UHGV-2174362_35	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-2174362_35	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-2174362_35	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2174362_36	PHROG	phrog_8470	NA	unknown function
UHGV-2174362_36	UniRef90	UniRef90_UPI001D0719D3	PcfJ domain-containing protein	NA
UHGV-2174362_36	eggNOG-mapper	1235793.C809_02197	PcfJ-like protein	NA
UHGV-2174362_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2174362_36	Structural annotation	PF14284	NA	NA
UHGV-2174362_37	UniRef90	UniRef90_UPI0003F6328F	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2174362_37	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-2174362_37	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-2174362_38	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2174362_38	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2174362_38	UniRef90	UniRef90_A0A173RBQ5	Ribonuclease H	NA
UHGV-2174362_38	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-2174362_38	Pfam	PF00075	RNase H	RNase_H
UHGV-2174362_38	COG	COG0328	Ribonuclease HI	NA
UHGV-2174362_38	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2174362_40	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2174362_40	eggNOG-mapper	411461.DORFOR_01138	NA	NA
UHGV-2174362_40	Structural annotation	PF01446	NA	NA
UHGV-2174362_44	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2174362_44	UniRef90	UniRef90_UPI0018984E24	NA	NA
UHGV-2174362_44	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-2174362_44	Pfam	PF13643	NA	DUF4145
UHGV-2174362_44	Structural annotation	PF06573	NA	NA
UHGV-2174362_45	PHROG	phrog_3882	NA	unknown function
UHGV-2174362_46	UniRef90	UniRef90_UPI00189E1E84	XRE family transcriptional regulator	NA
UHGV-2174362_46	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-2174362_46	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2174362_47	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2174362_47	UniRef90	UniRef90_A0A173Z9V2	Helix-turn-helix domain-containing protein	NA
UHGV-2174362_47	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-2174362_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2174362_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2174362_47	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2174362_48	PHROG	phrog_87	metallo-protease	other
UHGV-2174362_48	UniRef90	UniRef90_A0A374BT00	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2174362_48	eggNOG-mapper	1235792.C808_05259	Zn peptidase	NA
UHGV-2174362_48	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2174362_48	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2174362_48	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2174362_49	Structural annotation	PF21170, NF040959, COG1729	NA	NA
UHGV-2174362_50	UniRef90	UniRef90_UPI001C0CC79F	EbhA	NA
UHGV-2174362_50	eggNOG-mapper	1121865.OMW_00786	NA	NA
UHGV-2174362_50	Structural annotation	PF20650	NA	NA
UHGV-2174362_51	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2174362_51	PHROG	phrog_95	integrase	integration and excision
UHGV-2174362_51	UniRef90	UniRef90_A6BEV3	Resolvase, N-terminal domain protein	NA
UHGV-2174362_51	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-2174362_51	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2174362_51	Pfam	PF07508	Recombinase	Recombinase
UHGV-2174362_51	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2174362_51	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2174362_51	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-2174362_52	PHROG	phrog_23452	NA	unknown function
UHGV-2174362_52	UniRef90	UniRef90_A0A174JNC4	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-2174362_52	eggNOG-mapper	1280698.AUJS01000010_gene819	Putative peptidoglycan binding domain	NA
UHGV-2174362_52	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2174362_52	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2174362_52	Structural annotation	PF01471, COG3409	NA	NA
UHGV-2174362_53	PHROG	phrog_443	holin	lysis
UHGV-2174362_53	UniRef90	UniRef90_UPI001F16E4E6	holin	NA
UHGV-2174362_53	eggNOG-mapper	411462.DORLON_00825	Putative lactococcus lactis phage r1t holin	NA
UHGV-2174362_53	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2174362_53	Structural annotation	PF16945	NA	NA