UHGV-2174429

Genome information

Genome length 38,760 bps

CDS count 48

Completeness 99.90% (high-quality)

geNomad score 0.9486

Prediction confidence Confident

Genome information
Genome ID	UHGV-2174429
vOTU ID	vOTU-062652
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029842\|Ga0245273_100182\|provirus_22886_61645
BioSample	SAMEA3449324
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9486
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.98
Jumbo phage	No

Genome content
Genome length	38,760 bps
GC content	57.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.92%
Average CDS length	764.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2174429_1	PHROG	phrog_328	head maturation protease	head and packaging
UHGV-2174429_1	UniRef90	UniRef90_UPI001C023827	phage protease	NA
UHGV-2174429_1	eggNOG-mapper	794903.OPIT5_08310	P22 coat protein - gene protein 5	NA
UHGV-2174429_1	Pfam	PF10123	Mu-like prophage I protein	Mu-like_Pro
UHGV-2174429_2	eggNOG-mapper	521674.Plim_2126	NA	NA
UHGV-2174429_2	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-2174429_2	Structural annotation	PF20911, MF_04133, NF041162, COG4397	NA	NA
UHGV-2174429_3	Structural annotation	PF21190, TIGR03511, COG4935	NA	NA
UHGV-2174429_9	Structural annotation	PF14594, TIGR01646, COG4379	NA	NA
UHGV-2174429_10	Structural annotation	PF18404, MF_01520, TIGR03469, COG1442	NA	NA
UHGV-2174429_11	Structural annotation	PF18654, TIGR00606, COG0268	NA	NA
UHGV-2174429_12	Structural annotation	PF18404, MF_01520, TIGR03469, COG1442	NA	NA
UHGV-2174429_13	Structural annotation	PF14594, TIGR01646, COG4379	NA	NA
UHGV-2174429_18	Structural annotation	PF05587, PF03388, COG3506	NA	NA
UHGV-2174429_21	COG	COG2928	NA	NA
UHGV-2174429_22	Structural annotation	PF20039	NA	NA
UHGV-2174429_23	eggNOG-mapper	278957.ABEA03000019_gene1901	NA	NA
UHGV-2174429_24	UniRef90	UniRef90_A0A2N8I9T0	NA	NA
UHGV-2174429_24	Structural annotation	PF07030, COG4387	NA	NA
UHGV-2174429_25	PHROG	phrog_1005	major head protein	head and packaging
UHGV-2174429_25	eggNOG-mapper	794903.OPIT5_21825	NA	NA
UHGV-2174429_27	PHROG	phrog_328	head maturation protease	head and packaging
UHGV-2174429_27	UniRef90	UniRef90_A0A3E1EBJ4	Mu-like prophage I protein	NA
UHGV-2174429_27	eggNOG-mapper	552398.HMPREF0866_02218	Mu-like prophage I protein	NA
UHGV-2174429_27	Pfam	PF10123	Mu-like prophage I protein	Mu-like_Pro
UHGV-2174429_27	COG	COG4388	Mu-like prophage I protein	NA
UHGV-2174429_28	PHROG	phrog_113	portal protein	head and packaging
UHGV-2174429_28	UniRef90	UniRef90_A0A857Z5Q4	PBECR2 domain-containing protein	NA
UHGV-2174429_28	eggNOG-mapper	278957.ABEA03000019_gene1900	Mu-like prophage protein gp29	NA
UHGV-2174429_28	Pfam	PF06074	NA	DUF935
UHGV-2174429_28	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-2174429_28	COG	COG4383	NA	NA
UHGV-2174429_29	eggNOG-mapper	794903.OPIT5_21795	Mu-like prophage FluMu protein gp28	NA
UHGV-2174429_29	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-2174429_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2174429_30	UniRef90	UniRef90_A0A1C7P9U0	Terminase-like family	NA
UHGV-2174429_30	eggNOG-mapper	278957.ABEA03000094_gene4689	Mu-like prophage FluMu protein gp28	NA
UHGV-2174429_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2174429_30	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-2174429_31	UniRef90	UniRef90_A0A7G6DWZ3	NA	NA
UHGV-2174429_34	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-2174429_34	PHROG	phrog_2649	endolysin	lysis
UHGV-2174429_34	UniRef90	UniRef90_A0A857ZST6	Peptidase_M15_4 domain-containing protein	NA
UHGV-2174429_34	eggNOG-mapper	349741.Amuc_1134	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-2174429_34	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-2174429_34	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-2174429_34	Structural annotation	NF000472, COG2173	NA	NA
UHGV-2174429_36	UniRef90	UniRef90_A0A8F1K3X3	DNA-binding protein	NA
UHGV-2174429_36	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2174429_39	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2174429_39	UniRef90	UniRef90_UPI001EDEDA8C	host-nuclease inhibitor Gam family protein	NA
UHGV-2174429_39	eggNOG-mapper	742727.HMPREF9447_01724	Bacteriophage Mu Gam like protein	NA
UHGV-2174429_39	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-2174429_39	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-2174429_42	Structural annotation	MF_01326_A, NF007260, NF005100	NA	NA
UHGV-2174429_43	PHROG	phrog_874	NA	unknown function
UHGV-2174429_43	UniRef90	UniRef90_UPI00137452E8	morphogenetic protein	NA
UHGV-2174429_43	eggNOG-mapper	349741.Amuc_1711	NA	NA
UHGV-2174429_43	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2174429_46	UniRef90	UniRef90_A0A8F1FXY5	Peptidase_S24 domain-containing protein	NA
UHGV-2174429_46	eggNOG-mapper	349741.Amuc_1794	Peptidase S24-like	NA
UHGV-2174429_46	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2174429_48	KOfam	K14059	int; integrase	NA
UHGV-2174429_48	PHROG	phrog_1	integrase	integration and excision
UHGV-2174429_48	UniRef90	UniRef90_B2UKS9	Integrase family protein	NA
UHGV-2174429_48	eggNOG-mapper	349741.Amuc_1378	Belongs to the 'phage' integrase family	NA
UHGV-2174429_48	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2174429_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2174429_48	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2174429_48	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02225, COG4974	NA	NA