UHGV-2174574

Genome information

Genome length 39,323 bps

CDS count 51

Completeness 83.98% (medium-quality)

geNomad score 0.9692

Prediction confidence Confident

Genome information
Genome ID	UHGV-2174574
vOTU ID	vOTU-030662
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029847\|Ga0245281_100521\|provirus_1_39323
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9692
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.56
Jumbo phage	No

Genome content
Genome length	39,323 bps
GC content	47.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	94.14%
Average CDS length	729.18 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2174574_2	KOfam	K07273	acm; lysozyme	NA
UHGV-2174574_2	PHROG	phrog_291	endolysin	lysis
UHGV-2174574_2	UniRef90	UniRef90_A0A1C6GH19	Autolytic lysozyme	NA
UHGV-2174574_2	eggNOG-mapper	641112.ACOK01000108_gene1814	hydrolase, family 25	NA
UHGV-2174574_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2174574_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2174574_2	Structural annotation	PF01183, NF002575, COG3757	NA	NA
UHGV-2174574_3	PHROG	phrog_199	holin	lysis
UHGV-2174574_3	UniRef90	UniRef90_A0A1C6GH21	Phage-related holin (Lysis protein)	NA
UHGV-2174574_3	eggNOG-mapper	642492.Clole_0759	toxin secretion phage lysis holin	NA
UHGV-2174574_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2174574_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2174574_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2174574_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2174574_4	PHROG	phrog_17180	NA	unknown function
UHGV-2174574_4	eggNOG-mapper	1200557.JHWV01000006_gene1699	NA	NA
UHGV-2174574_5	eggNOG-mapper	665950.HMPREF1025_01559	NA	NA
UHGV-2174574_5	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-2174574_5	Structural annotation	PF13385, PF19789, PF06339, NF041449, COG2273	NA	NA
UHGV-2174574_8	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2174574_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2174574_10	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-2174574_10	UniRef90	UniRef90_A0A1C6GMQ4	Phage-related protein	NA
UHGV-2174574_10	eggNOG-mapper	1504822.CCNO01000012_gene489	phage tail tape measure protein	NA
UHGV-2174574_10	COG	COG5412	Phage-related protein	NA
UHGV-2174574_11	PHROG	phrog_706	NA	unknown function
UHGV-2174574_11	UniRef90	UniRef90_A0A1C6GMP1	Bacteriophage Gp15 protein	NA
UHGV-2174574_11	eggNOG-mapper	1321782.HMPREF1986_02275	Bacteriophage Gp15 protein	NA
UHGV-2174574_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2174574_11	Structural annotation	PF06854	NA	NA
UHGV-2174574_12	eggNOG-mapper	536233.CLO_0892	NA	NA
UHGV-2174574_12	Structural annotation	PF10666	NA	NA
UHGV-2174574_13	PHROG	phrog_820	major tail protein	tail
UHGV-2174574_13	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-2174574_13	eggNOG-mapper	665956.HMPREF1032_02945	NA	NA
UHGV-2174574_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2174574_14	Structural annotation	PF08873	NA	NA
UHGV-2174574_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2174574_15	UniRef90	UniRef90_A0A1C6GMA0	Minor capsid protein	NA
UHGV-2174574_15	eggNOG-mapper	1238184.CM001792_gene98	Minor capsid protein	NA
UHGV-2174574_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2174574_15	Structural annotation	PF11114	NA	NA
UHGV-2174574_16	PHROG	phrog_793	head-tail adaptor	connector
UHGV-2174574_16	UniRef90	UniRef90_A0A1C6GM46	Minor capsid protein	NA
UHGV-2174574_16	eggNOG-mapper	1238184.CM001792_gene97	Minor capsid protein	NA
UHGV-2174574_16	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-2174574_16	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-2174574_16	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2174574_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2174574_17	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-2174574_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-2174574_18	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-2174574_18	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-2174574_18	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2174574_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2174574_19	UniRef90	UniRef90_A0A1C6GGD5	Phage minor structural protein GP20	NA
UHGV-2174574_19	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-2174574_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2174574_19	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2174574_20	PHROG	phrog_774	NA	unknown function
UHGV-2174574_20	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-2174574_21	PHROG	phrog_419	NA	unknown function
UHGV-2174574_21	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-2174574_21	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-2174574_21	Structural annotation	PF14083	NA	NA
UHGV-2174574_22	Structural annotation	PF11607, MF_01077, NF037951, COG4568	NA	NA
UHGV-2174574_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2174574_23	UniRef90	UniRef90_A0A1C6GGW2	Phage minor capsid protein 2	NA
UHGV-2174574_23	eggNOG-mapper	1151292.QEW_4539	NA	NA
UHGV-2174574_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2174574_23	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-2174574_23	COG	COG2369	NA	NA
UHGV-2174574_23	Structural annotation	PF06152, PF15542	NA	NA
UHGV-2174574_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-2174574_24	UniRef90	UniRef90_A0A1C6GG74	Phage portal protein, putative, A118 family	NA
UHGV-2174574_24	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-2174574_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2174574_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2174574_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2174574_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2174574_25	UniRef90	UniRef90_A0A1C6GFY7	Phage terminase, large subunit, PBSX family	NA
UHGV-2174574_25	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2174574_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2174574_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2174574_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2174574_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2174574_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2174574_26	Structural annotation	PF15968	NA	NA
UHGV-2174574_27	Pfam	PF20505	NA	DUF6731
UHGV-2174574_27	Structural annotation	PF20505	NA	NA
UHGV-2174574_28	Structural annotation	TIGR01636	NA	NA
UHGV-2174574_30	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2174574_30	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2174574_30	UniRef90	UniRef90_R4K7K3	DNA/RNA helicase, superfamily II, SNF2 family	NA
UHGV-2174574_30	eggNOG-mapper	86416.Clopa_0567	snf2 family	NA
UHGV-2174574_30	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2174574_30	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2174574_30	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2174574_30	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2174574_30	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2174574_31	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2174574_31	UniRef90	UniRef90_UPI00092FE6E0	VRR-NUC domain-containing protein	NA
UHGV-2174574_31	eggNOG-mapper	706434.HMPREF9429_00391	VRR_NUC	NA
UHGV-2174574_31	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-2174574_32	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2174574_32	UniRef90	UniRef90_A0A3G2R4E0	Virulence-associated protein E	NA
UHGV-2174574_32	eggNOG-mapper	1321778.HMPREF1982_02544	Virulence-associated protein E	NA
UHGV-2174574_32	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2174574_32	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2174574_32	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-2174574_33	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2174574_33	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2174574_33	UniRef90	UniRef90_A0A315Y314	DNA polymerase	NA
UHGV-2174574_33	eggNOG-mapper	1449126.JQKL01000006_gene840	DNA polymerase	NA
UHGV-2174574_33	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2174574_33	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2174574_33	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2174574_34	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2174574_34	UniRef90	UniRef90_A0A7G6E7X9	NA	NA
UHGV-2174574_34	eggNOG-mapper	1449126.JQKL01000006_gene839	NA	NA
UHGV-2174574_34	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2174574_34	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-2174574_35	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2174574_35	UniRef90	UniRef90_A0A1G4FJP6	Inactivated superfamily I helicase	NA
UHGV-2174574_35	eggNOG-mapper	1449126.JQKL01000006_gene838	NA	NA
UHGV-2174574_35	Pfam	PF10926	NA	DUF2800
UHGV-2174574_35	COG	COG2887	RecB family exonuclease	NA
UHGV-2174574_35	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2174574_36	PHROG	phrog_18562	NA	unknown function
UHGV-2174574_36	eggNOG-mapper	1089548.KI783301_gene2636	NA	NA
UHGV-2174574_38	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2174574_38	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2174574_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2174574_38	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-2174574_43	UniRef90	UniRef90_UPI00164C9F56	helix-turn-helix domain-containing protein	NA
UHGV-2174574_43	eggNOG-mapper	929506.CbC4_1187	NA	NA
UHGV-2174574_43	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-2174574_44	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2174574_44	UniRef90	UniRef90_A0A1C6GF80	Predicted transcriptional regulator	NA
UHGV-2174574_44	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-2174574_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2174574_44	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-2174574_45	PHROG	phrog_87	metallo-protease	other
UHGV-2174574_45	UniRef90	UniRef90_A0A7X9BSM0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2174574_45	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-2174574_45	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2174574_45	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2174574_46	eggNOG-mapper	218284.CCDN010000001_gene861	Phage minor capsid protein 2	NA
UHGV-2174574_47	Structural annotation	PF19495, TIGR03931	NA	NA
UHGV-2174574_48	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2174574_48	PHROG	phrog_95	integrase	integration and excision
UHGV-2174574_48	UniRef90	UniRef90_A0A1C6GEY5	Resolvase, N terminal domain	NA
UHGV-2174574_48	eggNOG-mapper	718252.FP2_29980	NA	NA
UHGV-2174574_48	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2174574_48	Pfam	PF07508	Recombinase	Recombinase
UHGV-2174574_48	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2174574_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2174574_48	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2174574_50	PHROG	phrog_9773	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-2174574_50	Structural annotation	PF19481, PF01978, MF_01909, NF040939, COG5625	NA	NA