UHGV-2175134

Genome information

Genome length 37,966 bps

CDS count 58

Completeness 66.53% (medium-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-2175134
vOTU ID	vOTU-018992
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029845\|Ga0245277_1000204\|provirus_1_42350
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	66.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.1
Jumbo phage	No

Genome content
Genome length	37,966 bps
GC content	48.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.46%
Average CDS length	617.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2175134_4	Structural annotation	PF03370	NA	NA
UHGV-2175134_5	PHROG	phrog_11011	long tail fiber protein distal subunit	tail
UHGV-2175134_5	eggNOG-mapper	742725.HMPREF9450_02124	NA	NA
UHGV-2175134_7	eggNOG-mapper	742725.HMPREF9450_01065	NA	NA
UHGV-2175134_7	Structural annotation	PF20459	NA	NA
UHGV-2175134_8	PHROG	phrog_12	portal protein	head and packaging
UHGV-2175134_8	UniRef90	UniRef90_UPI001CF883FB	phage portal protein	NA
UHGV-2175134_8	eggNOG-mapper	742725.HMPREF9450_01066	Phage portal protein	NA
UHGV-2175134_8	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2175134_8	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2175134_8	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-2175134_11	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-2175134_11	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-2175134_11	eggNOG-mapper	742725.HMPREF9450_01068	NA	NA
UHGV-2175134_11	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2175134_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2175134_12	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2175134_12	UniRef90	UniRef90_A0A379MU54	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2175134_12	eggNOG-mapper	1033732.CAHI01000030_gene1215	Belongs to the peptidase S14 family	NA
UHGV-2175134_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2175134_12	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2175134_13	PHROG	phrog_5783	NA	unknown function
UHGV-2175134_13	UniRef90	UniRef90_UPI001E2C6287	NYN domain-containing protein	NA
UHGV-2175134_13	eggNOG-mapper	702438.HMPREF9431_02012	NYN domain	NA
UHGV-2175134_13	Pfam	PF01936	NYN domain	NYN
UHGV-2175134_13	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-2175134_13	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-2175134_15	eggNOG-mapper	742767.HMPREF9456_03308	NA	NA
UHGV-2175134_17	PHROG	phrog_14295	NA	unknown function
UHGV-2175134_17	eggNOG-mapper	762968.HMPREF9441_00568	NA	NA
UHGV-2175134_17	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2175134_18	Structural annotation	PF21683	NA	NA
UHGV-2175134_19	Structural annotation	PF16774, TIGR01633, COG3499	NA	NA
UHGV-2175134_21	Structural annotation	PF06141, NF040576, COG3167	NA	NA
UHGV-2175134_25	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2175134_25	UniRef90	UniRef90_A0A1Y4AKJ8	Terminase	NA
UHGV-2175134_25	eggNOG-mapper	1203611.KB894548_gene2449	domain protein	NA
UHGV-2175134_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2175134_25	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-2175134_25	COG	COG5410	NA	NA
UHGV-2175134_25	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-2175134_26	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2175134_26	UniRef90	UniRef90_A0A563DE01	DNA-packaging protein	NA
UHGV-2175134_26	eggNOG-mapper	1168548.I6S1J2_9CAUD	Pfam:GP3_package	NA
UHGV-2175134_26	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2175134_26	Structural annotation	PF16677	NA	NA
UHGV-2175134_27	eggNOG-mapper	1235803.C825_05321	NA	NA
UHGV-2175134_27	Structural annotation	PF16509, TIGR02985, COG1595	NA	NA
UHGV-2175134_28	eggNOG-mapper	1121100.JCM6294_1073	NA	NA
UHGV-2175134_28	Pfam	PF08299	Bacterial dnaA protein helix-turn-helix	Bac_DnaA_C
UHGV-2175134_28	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2175134_28	Structural annotation	PF08299, NF004688	NA	NA
UHGV-2175134_29	UniRef90	UniRef90_UPI00191FB118	retroviral-like aspartic protease family protein	NA
UHGV-2175134_29	Pfam	PF13650	Aspartyl protease	Asp_protease_2
UHGV-2175134_29	COG	COG3577	Predicted aspartyl protease	NA
UHGV-2175134_30	PHROG	phrog_35741	NA	unknown function
UHGV-2175134_30	eggNOG-mapper	445970.ALIPUT_01619	NA	NA
UHGV-2175134_33	UniRef90	UniRef90_A0A396M967	NA	NA
UHGV-2175134_33	Pfam	PF04448	NA	DUF551
UHGV-2175134_33	Structural annotation	PF04448	NA	NA
UHGV-2175134_35	Structural annotation	PF16007, NF038251, COG1695	NA	NA
UHGV-2175134_36	PHROG	phrog_10841	NA	unknown function
UHGV-2175134_37	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-2175134_41	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2175134_41	UniRef90	UniRef90_A0A285X3F3	NA	NA
UHGV-2175134_41	eggNOG-mapper	679935.Alfi_0470	NA	NA
UHGV-2175134_41	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2175134_41	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-2175134_42	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2175134_42	UniRef90	UniRef90_UPI0018AC7931	recombination protein NinG	NA
UHGV-2175134_42	eggNOG-mapper	762968.HMPREF9441_03237	NA	NA
UHGV-2175134_42	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-2175134_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2175134_42	Structural annotation	PF05766	NA	NA
UHGV-2175134_44	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-2175134_44	UniRef90	UniRef90_UPI0018A94F46	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-2175134_44	eggNOG-mapper	1268240.ATFI01000008_gene2555	NA	NA
UHGV-2175134_44	Pfam	PF12684	NA	DUF3799
UHGV-2175134_44	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-2175134_45	PHROG	phrog_14584	NA	unknown function
UHGV-2175134_45	eggNOG-mapper	1268240.ATFI01000008_gene2554	NA	NA
UHGV-2175134_52	PHROG	phrog_11227	protease	other
UHGV-2175134_52	UniRef90	UniRef90_A0A841MSP4	Regulator of protease activity HflC (Stomatin/prohibitin superfamily)	NA
UHGV-2175134_52	eggNOG-mapper	742725.HMPREF9450_02070	NA	NA
UHGV-2175134_54	Structural annotation	PF14084	NA	NA
UHGV-2175134_55	Structural annotation	NF033948	NA	NA
UHGV-2175134_56	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2175134_56	UniRef90	UniRef90_G5H733	HTH cro/C1-type domain-containing protein	NA
UHGV-2175134_56	eggNOG-mapper	742725.HMPREF9450_00876	Transcriptional regulator	NA
UHGV-2175134_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2175134_56	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2175134_56	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2175134_56	Structural annotation	PF01381, PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2175134_57	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-2175134_57	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2175134_57	UniRef90	UniRef90_UPI000E4E038E	type I restriction endonuclease	NA
UHGV-2175134_57	eggNOG-mapper	445970.ALIPUT_01215	Type I restriction enzyme HsdR protein N-terminal domain protein	NA
UHGV-2175134_57	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-2175134_57	COG	COG4748	NA	NA
UHGV-2175134_57	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-2175134_58	eggNOG-mapper	445970.ALIPUT_01643	NA	NA
UHGV-2175134_58	Structural annotation	PF19818	NA	NA