UHGV-2175282

Genome information

Genome length 33,027 bps

CDS count 46

Completeness 93.25% (high-quality)

geNomad score 0.9688

Prediction confidence Confident

Genome information
Genome ID	UHGV-2175282
vOTU ID	vOTU-062701
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029843\|Ga0245274_100004\|provirus_364516_418863
BioSample	SAMEA3449325
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.25% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9688
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.7
Jumbo phage	No

Genome content
Genome length	33,027 bps
GC content	44.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.04%
Average CDS length	671.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2175282_1	PHROG	phrog_16255	NA	unknown function
UHGV-2175282_1	UniRef90	UniRef90_UPI0003F7F860	RloB family protein	NA
UHGV-2175282_1	eggNOG-mapper	1280664.AUIX01000019_gene2692	RloB-like protein	NA
UHGV-2175282_1	PADLOC	AbiLii-1	AbiLii	Abi
UHGV-2175282_1	Pfam	PF13707	RloB-like protein	RloB
UHGV-2175282_1	Structural annotation	PF13707, COG1731	NA	NA
UHGV-2175282_2	KOfam	K06926	NA	NA
UHGV-2175282_2	PHROG	phrog_5836	NA	unknown function
UHGV-2175282_2	UniRef90	UniRef90_W7UPE2	Abortive phage infection protein	NA
UHGV-2175282_2	eggNOG-mapper	1280664.AUIX01000019_gene2691	AAA domain, putative AbiEii toxin, Type IV TA system	NA
UHGV-2175282_2	PADLOC	AbiLi-1	AbiLi	Abi
UHGV-2175282_2	Pfam	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
UHGV-2175282_2	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-2175282_2	Structural annotation	PF13304, MF_00365, NF041760, COG4637	NA	NA
UHGV-2175282_3	KOfam	K07273	acm; lysozyme	NA
UHGV-2175282_3	PHROG	phrog_291	endolysin	lysis
UHGV-2175282_3	UniRef90	UniRef90_A0A1C6IMI8	Autolytic lysozyme	NA
UHGV-2175282_3	eggNOG-mapper	246199.CUS_5914	hydrolase, family 25	NA
UHGV-2175282_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2175282_3	Pfam	PF01476	LysM domain	LysM
UHGV-2175282_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2175282_3	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2175282_4	PHROG	phrog_1863	NA	unknown function
UHGV-2175282_4	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2175282_5	PHROG	phrog_13256	NA	unknown function
UHGV-2175282_5	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-2175282_6	PHROG	phrog_134	NA	unknown function
UHGV-2175282_6	UniRef90	UniRef90_A0A373VFP4	XkdX family protein	NA
UHGV-2175282_6	eggNOG-mapper	1298920.KI911353_gene543	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-2175282_6	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2175282_6	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2175282_8	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-2175282_8	Structural annotation	PF10651	NA	NA
UHGV-2175282_10	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-2175282_10	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-2175282_10	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2175282_11	PHROG	phrog_1194	NA	unknown function
UHGV-2175282_11	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-2175282_11	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2175282_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2175282_12	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-2175282_12	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-2175282_12	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-2175282_12	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2175282_13	PHROG	phrog_706	NA	unknown function
UHGV-2175282_13	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-2175282_13	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-2175282_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2175282_13	Structural annotation	PF06854	NA	NA
UHGV-2175282_14	PHROG	phrog_11299	NA	unknown function
UHGV-2175282_14	eggNOG-mapper	411471.SUBVAR_06935	NA	NA
UHGV-2175282_14	Structural annotation	PF20378	NA	NA
UHGV-2175282_15	PHROG	phrog_3099	NA	unknown function
UHGV-2175282_15	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-2175282_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2175282_16	PHROG	phrog_3266	tail completion	connector
UHGV-2175282_16	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-2175282_16	Structural annotation	PF20765	NA	NA
UHGV-2175282_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2175282_17	UniRef90	UniRef90_UPI00143BEF55	minor capsid protein	NA
UHGV-2175282_17	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2175282_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2175282_17	Structural annotation	PF11114	NA	NA
UHGV-2175282_18	PHROG	phrog_3366	NA	unknown function
UHGV-2175282_18	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-2175282_18	Pfam	PF20536	NA	DUF6751
UHGV-2175282_18	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2175282_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2175282_19	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2175282_19	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-2175282_20	PHROG	phrog_544	major head protein	head and packaging
UHGV-2175282_20	UniRef90	UniRef90_R6T873	Major head protein	NA
UHGV-2175282_20	eggNOG-mapper	936580.HMPREF1516_0718	NA	NA
UHGV-2175282_20	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2175282_20	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2175282_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2175282_21	UniRef90	UniRef90_R6U550	Phage minor structural protein GP20	NA
UHGV-2175282_21	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-2175282_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2175282_21	Structural annotation	PF06810	NA	NA
UHGV-2175282_22	Structural annotation	PF12305	NA	NA
UHGV-2175282_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2175282_23	UniRef90	UniRef90_R6SXL7	Phage minor capsid protein 2	NA
UHGV-2175282_23	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-2175282_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2175282_23	COG	COG2369	NA	NA
UHGV-2175282_23	Structural annotation	PF06152	NA	NA
UHGV-2175282_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-2175282_24	UniRef90	UniRef90_R6TDI6	Phage portal protein SPP1 Gp6-like	NA
UHGV-2175282_24	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-2175282_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2175282_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2175282_25	PHROG	phrog_18557	terminase large subunit	head and packaging
UHGV-2175282_25	UniRef90	UniRef90_A0A1C6IMR2	Phage terminase, large subunit, PBSX family	NA
UHGV-2175282_25	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2175282_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2175282_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2175282_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2175282_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2175282_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2175282_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2175282_28	UniRef90	UniRef90_A0A371AT86	NA	NA
UHGV-2175282_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2175282_30	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2175282_30	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2175282_30	UniRef90	UniRef90_A0A356CZ91	DNA primase	NA
UHGV-2175282_30	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-2175282_30	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2175282_30	Pfam	PF19263	NA	DUF5906
UHGV-2175282_30	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2175282_30	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2175282_30	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2175282_30	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-2175282_31	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2175282_31	UniRef90	UniRef90_A0A373SL44	NA	NA
UHGV-2175282_31	eggNOG-mapper	1423807.BACO01000050_gene1454	NA	NA
UHGV-2175282_31	Pfam	PF05037	NA	DUF669
UHGV-2175282_31	Structural annotation	PF05037, NF004948	NA	NA
UHGV-2175282_32	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2175282_32	UniRef90	UniRef90_A0A373SNE0	VRR-NUC domain-containing protein	NA
UHGV-2175282_32	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-2175282_32	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2175282_32	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-2175282_33	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2175282_33	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2175282_33	UniRef90	UniRef90_A0A356CZA9	Helicase	NA
UHGV-2175282_33	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-2175282_33	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2175282_33	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2175282_33	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2175282_33	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2175282_33	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2175282_34	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2175282_34	UniRef90	UniRef90_A0A373VPJ3	ATP-binding protein (Fragment)	NA
UHGV-2175282_34	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-2175282_34	Pfam	PF13479	AAA domain	AAA_24
UHGV-2175282_34	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2175282_35	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2175282_35	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-2175282_35	eggNOG-mapper	881621.LIV_2167	Siphovirus Gp157	NA
UHGV-2175282_35	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2175282_35	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2175282_36	PHROG	phrog_15609	NA	unknown function
UHGV-2175282_36	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-2175282_36	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-2175282_36	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2175282_42	Structural annotation	PF11372	NA	NA
UHGV-2175282_44	PHROG	phrog_750	NA	unknown function
UHGV-2175282_44	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-2175282_44	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2175282_46	UniRef90	UniRef90_A0A373VPI4	HTH cro/C1-type domain-containing protein	NA
UHGV-2175282_46	eggNOG-mapper	1292035.H476_1036	NA	NA
UHGV-2175282_46	Structural annotation	PF05339, NF041951, COG1396	NA	NA