UHGV-2175531

Genome information

vOTU vOTU-019590

Genome length 50,578 bps

CDS count 75

Completeness 64.39% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-2175531
vOTU ID	vOTU-019590
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029791\|Ga0243849_1000222\|provirus_181_50758
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.46
Jumbo phage	No

Genome content
Genome length	50,578 bps
GC content	41.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	83.89%
Average CDS length	568.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2175531_1	eggNOG-mapper	1232453.BAIF02000002_gene1278	NA	NA
UHGV-2175531_3	UniRef90	UniRef90_A0A317UAL9	LexA_DNA_bind domain-containing protein	NA
UHGV-2175531_3	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-2175531_3	Structural annotation	PF01726, MF_00732, TIGR00738, COG0640	NA	NA
UHGV-2175531_4	PHROG	phrog_19106	NA	unknown function
UHGV-2175531_4	UniRef90	UniRef90_A0A317UEK9	GIY-YIG domain-containing protein	NA
UHGV-2175531_4	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-2175531_4	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-2175531_4	Structural annotation	TIGR01453	NA	NA
UHGV-2175531_5	PHROG	phrog_2164	NA	unknown function
UHGV-2175531_5	eggNOG-mapper	1260356.D920_00267	NA	NA
UHGV-2175531_6	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2175531_6	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2175531_6	UniRef90	UniRef90_UPI000E4E54B6	DNA cytosine methyltransferase	NA
UHGV-2175531_6	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-2175531_6	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2175531_6	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2175531_6	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2175531_6	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2175531_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2175531_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2175531_7	UniRef90	UniRef90_A0A317UFG5	Single-stranded DNA-binding protein	NA
UHGV-2175531_7	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-2175531_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2175531_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2175531_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2175531_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2175531_7	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2175531_9	PHROG	phrog_30930	NA	unknown function
UHGV-2175531_9	eggNOG-mapper	1214184.ALKY01000039_gene933	NA	NA
UHGV-2175531_9	Structural annotation	PF05037	NA	NA
UHGV-2175531_10	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2175531_10	UniRef90	UniRef90_A0A6N7SQ41	MBL fold metallo-hydrolase	NA
UHGV-2175531_10	eggNOG-mapper	397290.C810_01486	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-2175531_10	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2175531_11	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2175531_11	UniRef90	UniRef90_A0A412SAY1	MBL fold metallo-hydrolase	NA
UHGV-2175531_11	eggNOG-mapper	1321778.HMPREF1982_01213	Metallo-beta-lactamase superfamily	NA
UHGV-2175531_11	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-2175531_11	dbAPIS	APIS001	NA	NA
UHGV-2175531_11	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2175531_13	PHROG	phrog_25456	NA	unknown function
UHGV-2175531_14	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2175531_14	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2175531_14	UniRef90	UniRef90_A0A317UBP4	Reverse transcriptase domain-containing protein	NA
UHGV-2175531_14	eggNOG-mapper	658655.HMPREF0988_00871	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2175531_14	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2175531_14	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2175531_14	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2175531_14	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-2175531_15	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-2175531_15	UniRef90	UniRef90_A0A3E5ENL0	Four helix bundle protein	NA
UHGV-2175531_15	eggNOG-mapper	658655.HMPREF0988_00872	NA	NA
UHGV-2175531_15	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-2175531_15	Structural annotation	PF05635, NF033474, COG3308	NA	NA
UHGV-2175531_16	PHROG	phrog_9958	NA	unknown function
UHGV-2175531_16	UniRef90	UniRef90_A0A1C5S103	NA	NA
UHGV-2175531_16	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-2175531_16	Pfam	PF19789	NA	DUF6273
UHGV-2175531_16	Structural annotation	PF19789	NA	NA
UHGV-2175531_17	PHROG	phrog_9958	NA	unknown function
UHGV-2175531_17	UniRef90	UniRef90_R5KQI2	NA	NA
UHGV-2175531_17	eggNOG-mapper	658655.HMPREF0988_00874	NA	NA
UHGV-2175531_17	Pfam	PF19789	NA	DUF6273
UHGV-2175531_17	Structural annotation	PF19789	NA	NA
UHGV-2175531_19	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2175531_19	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2175531_19	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-2175531_19	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-2175531_19	Pfam	PF03837	RecT family	RecT
UHGV-2175531_19	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2175531_19	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2175531_19	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2175531_20	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2175531_20	PHROG	phrog_21084	recombinase	other
UHGV-2175531_20	UniRef90	UniRef90_A0A373NR21	AAA_23 domain-containing protein	NA
UHGV-2175531_20	eggNOG-mapper	476272.RUMHYD_03317	nuclear chromosome segregation	NA
UHGV-2175531_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2175531_20	Structural annotation	PF11398, PF05276, MF_00449, TIGR03185, COG0419	NA	NA
UHGV-2175531_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2175531_21	PHROG	phrog_26861	NA	unknown function
UHGV-2175531_21	UniRef90	UniRef90_A0A845QJ99	Single-stranded DNA-binding protein	NA
UHGV-2175531_21	eggNOG-mapper	1120998.AUFC01000016_gene32	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-2175531_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2175531_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2175531_21	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-2175531_25	Structural annotation	PF10922	NA	NA
UHGV-2175531_27	Structural annotation	PF12729	NA	NA
UHGV-2175531_28	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2175531_28	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2175531_28	UniRef90	UniRef90_A0A6N2U2M0	Phage antirepressor protein KilAC domain protein	NA
UHGV-2175531_28	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-2175531_28	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2175531_28	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2175531_28	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2175531_28	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2175531_31	UniRef90	UniRef90_A0A396QAC5	NA	NA
UHGV-2175531_31	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-2175531_31	Pfam	PF05339	NA	DUF739
UHGV-2175531_31	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2175531_31	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-2175531_32	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2175531_32	UniRef90	UniRef90_UPI001D029144	transcriptional regulator	NA
UHGV-2175531_32	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-2175531_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2175531_32	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-2175531_35	eggNOG-mapper	1121296.JONJ01000014_gene308	NA	NA
UHGV-2175531_36	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-2175531_36	PHROG	phrog_8810	NA	unknown function
UHGV-2175531_36	UniRef90	UniRef90_A0A317UEJ5	Stage 0 sporulation protein A homolog	NA
UHGV-2175531_36	eggNOG-mapper	1123009.AUID01000024_gene1449	NA	NA
UHGV-2175531_36	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-2175531_36	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-2175531_36	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-2175531_36	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-2175531_37	KOfam	K07273	acm; lysozyme	NA
UHGV-2175531_37	PHROG	phrog_291	endolysin	lysis
UHGV-2175531_37	UniRef90	UniRef90_A0A317UBE2	PG_binding_1 domain-containing protein	NA
UHGV-2175531_37	eggNOG-mapper	476272.RUMHYD_02876	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-2175531_37	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2175531_37	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2175531_37	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-2175531_37	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-2175531_38	UniRef90	UniRef90_UPI001C0EBDDC	pyocin knob domain-containing protein	NA
UHGV-2175531_39	PHROG	phrog_6616	tail protein	tail
UHGV-2175531_39	UniRef90	UniRef90_A0A317UCC3	Peptidase S74 domain-containing protein	NA
UHGV-2175531_39	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-2175531_39	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-2175531_39	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2175531_39	Structural annotation	PF05113, PF01835, PF03921, NF033848, COG3500	NA	NA
UHGV-2175531_40	PHROG	phrog_1194	NA	unknown function
UHGV-2175531_40	eggNOG-mapper	673837.D2IZU9_9CAUD	NA	NA
UHGV-2175531_40	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2175531_41	PHROG	phrog_32721	NA	unknown function
UHGV-2175531_41	UniRef90	UniRef90_UPI00101B9F0E	Ig-like domain-containing protein	NA
UHGV-2175531_41	eggNOG-mapper	397288.C806_03994	domain, Protein	NA
UHGV-2175531_41	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2175531_41	COG	COG5492	NA	NA
UHGV-2175531_41	Structural annotation	PF02368, PF08758, PF06832, MF_04116, NF010681, COG5492	NA	NA
UHGV-2175531_42	PHROG	phrog_2316	NA	unknown function
UHGV-2175531_42	UniRef90	UniRef90_UPI001570BA1B	NA	NA
UHGV-2175531_42	eggNOG-mapper	1504823.CCMM01000012_gene2233	NA	NA
UHGV-2175531_42	Pfam	PF16475	NA	DUF5052
UHGV-2175531_42	Structural annotation	PF16475	NA	NA
UHGV-2175531_43	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-2175531_45	PHROG	phrog_21101	NA	unknown function
UHGV-2175531_45	UniRef90	UniRef90_A0A317UAL1	NA	NA
UHGV-2175531_45	eggNOG-mapper	877415.JNJQ01000017_gene246	Prolyl oligopeptidase family	NA
UHGV-2175531_45	Pfam	PF07866	NA	DUF1653
UHGV-2175531_45	COG	COG4099	Predicted peptidase	NA
UHGV-2175531_45	Structural annotation	PF07866, COG4728	NA	NA
UHGV-2175531_46	PHROG	phrog_2880	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2175531_46	UniRef90	UniRef90_A0A412EKX5	Helix-turn-helix domain-containing protein	NA
UHGV-2175531_46	eggNOG-mapper	1121012.AUKX01000063_gene1091	Helix-turn-helix domain	NA
UHGV-2175531_46	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2175531_46	Structural annotation	PF13730, MF_01819, TIGR04176, COG5529	NA	NA
UHGV-2175531_47	Structural annotation	PF12990	NA	NA
UHGV-2175531_48	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2175531_48	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2175531_48	Structural annotation	PF08784, COG5625	NA	NA
UHGV-2175531_49	PHROG	phrog_28918	NA	unknown function
UHGV-2175531_49	eggNOG-mapper	476272.RUMHYD_01973	phage tail tape measure protein	NA
UHGV-2175531_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2175531_50	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2175531_50	UniRef90	UniRef90_A0A173UI60	Group I intron endonuclease	NA
UHGV-2175531_50	eggNOG-mapper	745718.JADT01000019_gene1515	Intron encoded nuclease repeat motif	NA
UHGV-2175531_50	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-2175531_50	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-2175531_50	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-2175531_50	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-2175531_51	PHROG	phrog_28918	NA	unknown function
UHGV-2175531_51	eggNOG-mapper	97139.C824_02812	phage tail tape measure protein	NA
UHGV-2175531_51	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2175531_53	PHROG	phrog_36112	NA	unknown function
UHGV-2175531_53	eggNOG-mapper	476272.RUMHYD_01969	NA	NA
UHGV-2175531_53	Structural annotation	PF16478	NA	NA
UHGV-2175531_54	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-2175531_56	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2175531_56	UniRef90	UniRef90_A0A1M4ZH65	Prophage antirepressor	NA
UHGV-2175531_56	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-2175531_56	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2175531_56	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2175531_56	COG	COG3617	Prophage antirepressor	NA
UHGV-2175531_56	Structural annotation	PF03374, PF02498, TIGR02681, COG3617	NA	NA
UHGV-2175531_61	eggNOG-mapper	476272.RUMHYD_01911	NA	NA
UHGV-2175531_61	Structural annotation	PF08962	NA	NA
UHGV-2175531_62	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-2175531_62	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-2175531_62	UniRef90	UniRef90_A0A317UAH6	DNA recombinase	NA
UHGV-2175531_62	eggNOG-mapper	476272.RUMHYD_01910	Resolvase, N terminal domain	NA
UHGV-2175531_62	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2175531_62	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-2175531_62	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2175531_62	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-2175531_63	UniRef90	UniRef90_A0A4Q5ERS4	NA	NA
UHGV-2175531_63	eggNOG-mapper	536227.CcarbDRAFT_4360	NA	NA
UHGV-2175531_63	Pfam	PF20075	NA	DUF6471
UHGV-2175531_63	Structural annotation	PF20075, NF041951, COG3655	NA	NA
UHGV-2175531_64	eggNOG-mapper	476272.RUMHYD_01907	NA	NA
UHGV-2175531_65	KOfam	K19090	cas5t; CRISPR-associated protein Cas5t	NA
UHGV-2175531_65	UniRef90	UniRef90_UPI0015707911	CRISPR-associated protein Cas5	NA
UHGV-2175531_65	eggNOG-mapper	1443125.Z962_10435	CRISPR-associated protein Cas5	NA
UHGV-2175531_65	PADLOC	cas_Cas5t	CRISPR-associated protein Cas5, subtype I-B/TNEAP	CRISPR-CAS
UHGV-2175531_65	Pfam	PF09704	CRISPR-associated protein (Cas_Cas5)	Cas_Cas5d
UHGV-2175531_65	COG	COG1688	CRISPR/Cas system-associated protein Cas5, RAMP superfamily	NA
UHGV-2175531_65	Structural annotation	PF09704, TIGR01895, COG1688	NA	NA
UHGV-2175531_67	UniRef90	UniRef90_S2ZLJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-2175531_67	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-2175531_67	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2175531_69	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2175531_69	UniRef90	UniRef90_A0A4Q5ERY6	XRE family transcriptional regulator	NA
UHGV-2175531_69	eggNOG-mapper	1235790.C805_00736	Transcriptional regulator	NA
UHGV-2175531_69	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2175531_69	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2175531_69	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2175531_71	eggNOG-mapper	658659.HMPREF0983_00103	NA	NA
UHGV-2175531_71	Structural annotation	PF18847, NF002761, COG1847	NA	NA
UHGV-2175531_75	PHROG	phrog_8680	NA	unknown function
UHGV-2175531_75	UniRef90	UniRef90_A0A412EMT7	NA	NA
UHGV-2175531_75	eggNOG-mapper	476272.RUMHYD_01896	NA	NA
UHGV-2175531_75	Pfam	PF14386	NA	DUF4417
UHGV-2175531_75	Structural annotation	PF14386	NA	NA