UHGV-2175788

Genome information

Genome length 37,436 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9732

Prediction confidence Confident

Genome information
Genome ID	UHGV-2175788
vOTU ID	vOTU-010605
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029793\|Ga0243738_1000077\|provirus_96881_137367
BioSample	SAMN05971441
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9732
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.5
Jumbo phage	No

Genome content
Genome length	37,436 bps
GC content	40.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.81%
Average CDS length	647.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2175788_1	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-2175788_1	PHROG	phrog_7	endolysin	lysis
UHGV-2175788_1	UniRef90	UniRef90_A0A1Y4VDT0	Lysozyme	NA
UHGV-2175788_1	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-2175788_1	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-2175788_1	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2175788_1	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-2175788_1	HAMAP	MF_04110	Endolysin	NA
UHGV-2175788_1	Structural annotation	PF08230, PF00959, MF_04110, COG3772	NA	NA
UHGV-2175788_2	PHROG	phrog_199	holin	lysis
UHGV-2175788_2	UniRef90	UniRef90_A0A414B826	Holin	NA
UHGV-2175788_2	eggNOG-mapper	1234679.BN424_1359	toxin secretion phage lysis holin	NA
UHGV-2175788_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2175788_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2175788_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2175788_3	Structural annotation	PF03412	NA	NA
UHGV-2175788_4	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-2175788_4	Structural annotation	PF00041, NF038367	NA	NA
UHGV-2175788_6	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2175788_7	PHROG	phrog_13589	NA	unknown function
UHGV-2175788_7	eggNOG-mapper	1121335.Clst_0408	ATPase involved in DNA repair	NA
UHGV-2175788_7	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-2175788_8	eggNOG-mapper	1410624.JNKK01000017_gene1988	NA	NA
UHGV-2175788_8	Structural annotation	PF01957, NF003085, COG1585	NA	NA
UHGV-2175788_9	PHROG	phrog_1887	tail protein	tail
UHGV-2175788_9	eggNOG-mapper	1392487.JIAD01000001_gene511	NA	NA
UHGV-2175788_9	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2175788_10	UniRef90	UniRef90_A0A285PT43	Fibronectin type III	NA
UHGV-2175788_10	eggNOG-mapper	1410624.JNKK01000045_gene550	Fibronectin type 3 domain	NA
UHGV-2175788_10	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-2175788_10	Structural annotation	PF02010, PF06995, PF16794, PF16303, PF19271, MF_04116, NF010681, TIGR02126, COG3499, COG3401	NA	NA
UHGV-2175788_11	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2175788_11	UniRef90	UniRef90_A0A1C5Y9X6	Phage-related protein	NA
UHGV-2175788_11	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-2175788_11	COG	COG1511	NA	NA
UHGV-2175788_11	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-2175788_12	PHROG	phrog_1633	NA	unknown function
UHGV-2175788_12	UniRef90	UniRef90_UPI000352F87D	NA	NA
UHGV-2175788_12	eggNOG-mapper	883110.HMPREF9260_00651	NA	NA
UHGV-2175788_12	Structural annotation	PF17318	NA	NA
UHGV-2175788_14	PHROG	phrog_117	major tail protein	tail
UHGV-2175788_14	UniRef90	UniRef90_A0A1Q8EF54	Major tail protein	NA
UHGV-2175788_14	eggNOG-mapper	585203.SMSK564_1279	domain, Protein	NA
UHGV-2175788_14	COG	COG5492	NA	NA
UHGV-2175788_14	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2175788_15	PHROG	phrog_123	tail terminator	connector
UHGV-2175788_15	UniRef90	UniRef90_A0A4U9XN73	NA	NA
UHGV-2175788_15	eggNOG-mapper	1121864.OMO_02157	NA	NA
UHGV-2175788_15	Structural annotation	PF06141	NA	NA
UHGV-2175788_16	eggNOG-mapper	875454.BAEW01000017_gene1592	NA	NA
UHGV-2175788_17	PHROG	phrog_501	head closure Hc1	connector
UHGV-2175788_17	eggNOG-mapper	665950.HMPREF1025_02528	NA	NA
UHGV-2175788_17	Structural annotation	PF12206, COG5614	NA	NA
UHGV-2175788_18	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-2175788_18	UniRef90	UniRef90_UPI0015704514	Gp19/Gp15/Gp42 family protein	NA
UHGV-2175788_18	eggNOG-mapper	742742.HMPREF9452_01301	Phage protein Gp19/Gp15/Gp42	NA
UHGV-2175788_18	Pfam	PF09355	NA	Phage_Gp19
UHGV-2175788_18	Structural annotation	PF09355	NA	NA
UHGV-2175788_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-2175788_20	UniRef90	UniRef90_R6G6T1	Gp7	NA
UHGV-2175788_20	eggNOG-mapper	205876.Q855V6_9CAUD	peptidase activity	NA
UHGV-2175788_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2175788_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2175788_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2175788_21	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-2175788_21	UniRef90	UniRef90_UPI001C03A2F1	NA	NA
UHGV-2175788_21	eggNOG-mapper	1123263.AUKY01000068_gene501	NA	NA
UHGV-2175788_21	Pfam	PF14265	NA	DUF4355
UHGV-2175788_21	Structural annotation	PF14265	NA	NA
UHGV-2175788_22	PHROG	phrog_918	NA	unknown function
UHGV-2175788_22	UniRef90	UniRef90_UPI001D092FF5	NA	NA
UHGV-2175788_22	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-2175788_22	Pfam	PF19791	NA	DUF6275
UHGV-2175788_22	Structural annotation	PF19791	NA	NA
UHGV-2175788_23	PHROG	phrog_1048	NA	unknown function
UHGV-2175788_23	UniRef90	UniRef90_UPI001D091C35	NA	NA
UHGV-2175788_23	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-2175788_23	Pfam	PF11195	NA	DUF2829
UHGV-2175788_23	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2175788_23	Structural annotation	PF11195	NA	NA
UHGV-2175788_24	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-2175788_24	UniRef90	UniRef90_A0A373CYS5	Bro-N domain-containing protein	NA
UHGV-2175788_24	eggNOG-mapper	642492.Clole_2799	Prophage antirepressor	NA
UHGV-2175788_24	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2175788_24	COG	COG3617	Prophage antirepressor	NA
UHGV-2175788_24	Structural annotation	PF02498, COG3617	NA	NA
UHGV-2175788_26	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-2175788_26	UniRef90	UniRef90_A0A844E763	ADPrib_exo_Tox domain-containing protein	NA
UHGV-2175788_26	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-2175788_26	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2175788_26	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-2175788_26	Structural annotation	PF03496, MF_04139, NF040688	NA	NA
UHGV-2175788_27	PHROG	phrog_104	portal protein	head and packaging
UHGV-2175788_27	UniRef90	UniRef90_A0A174L3Q9	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2175788_27	eggNOG-mapper	1123263.AUKY01000112_gene2059	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2175788_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2175788_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2175788_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2175788_28	UniRef90	UniRef90_UPI001D0087E2	terminase large subunit	NA
UHGV-2175788_28	eggNOG-mapper	1123263.AUKY01000112_gene2060	phage terminase, large subunit	NA
UHGV-2175788_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2175788_28	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-2175788_29	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2175788_29	UniRef90	UniRef90_UPI00156E0A7C	HNH endonuclease	NA
UHGV-2175788_29	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-2175788_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2175788_30	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-2175788_30	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-2175788_30	Structural annotation	PF02996	NA	NA
UHGV-2175788_31	PHROG	phrog_6568	NA	unknown function
UHGV-2175788_31	eggNOG-mapper	742740.HMPREF9474_02283	NA	NA
UHGV-2175788_34	UniRef90	UniRef90_A0A415UCM6	NA	NA
UHGV-2175788_34	eggNOG-mapper	1235799.C818_04211	NA	NA
UHGV-2175788_36	PHROG	phrog_17690	NA	unknown function
UHGV-2175788_36	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-2175788_38	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2175788_38	UniRef90	UniRef90_A0A1C5ZN97	Superfamily II helicase and inactivated derivatives	NA
UHGV-2175788_38	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-2175788_38	Pfam	PF06048	NA	DUF927
UHGV-2175788_38	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2175788_38	COG	COG5519	NA	NA
UHGV-2175788_38	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-2175788_39	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-2175788_39	PHROG	phrog_11992	NA	unknown function
UHGV-2175788_39	UniRef90	UniRef90_UPI001D0EB8AA	CHC2 zinc finger domain-containing protein	NA
UHGV-2175788_39	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-2175788_39	PADLOC	drt-UG29	DRT	DRT
UHGV-2175788_39	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-2175788_39	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-2175788_39	Structural annotation	PF01807, PF00401	NA	NA
UHGV-2175788_40	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2175788_40	UniRef90	UniRef90_UPI00156FB923	ERCC4 domain-containing protein	NA
UHGV-2175788_40	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-2175788_40	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-2175788_40	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-2175788_41	PHROG	phrog_18107	NA	unknown function
UHGV-2175788_41	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-2175788_41	Structural annotation	PF05037	NA	NA
UHGV-2175788_42	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2175788_42	UniRef90	UniRef90_A0A1C5SND3	AAA domain-containing protein	NA
UHGV-2175788_42	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-2175788_42	Pfam	PF13479	AAA domain	AAA_24
UHGV-2175788_42	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2175788_43	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-2175788_44	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2175788_44	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-2175788_44	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-2175788_44	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2175788_44	Structural annotation	PF05565	NA	NA
UHGV-2175788_46	Structural annotation	PF10922	NA	NA
UHGV-2175788_47	UniRef90	UniRef90_A0A415G6W5	Winged helix-turn-helix domain-containing protein	NA
UHGV-2175788_47	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-2175788_47	Structural annotation	PF20063	NA	NA
UHGV-2175788_48	PHROG	phrog_21028	NA	unknown function
UHGV-2175788_48	eggNOG-mapper	1235799.C818_04193	NA	NA
UHGV-2175788_48	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-2175788_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2175788_50	UniRef90	UniRef90_A0A3A8U981	XRE family transcriptional regulator	NA
UHGV-2175788_50	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-2175788_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2175788_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2175788_50	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2175788_51	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2175788_51	UniRef90	UniRef90_U2RAG2	HTH cro/C1-type domain-containing protein	NA
UHGV-2175788_51	eggNOG-mapper	1256908.HMPREF0373_00643	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2175788_51	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2175788_51	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2175788_51	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-2175788_52	PHROG	phrog_87	metallo-protease	other
UHGV-2175788_52	UniRef90	UniRef90_UPI001D07A9BA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2175788_52	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-2175788_52	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2175788_52	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2175788_53	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2175788_53	UniRef90	UniRef90_A0A415G6W4	Abi family protein	NA
UHGV-2175788_53	eggNOG-mapper	626523.GCWU000342_01051	Abi-like protein	NA
UHGV-2175788_53	PADLOC	AbiD	AbiD	Abi
UHGV-2175788_53	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2175788_53	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2175788_53	Structural annotation	PF07751, COG4823	NA	NA
UHGV-2175788_54	KOfam	K14059	int; integrase	NA
UHGV-2175788_54	PHROG	phrog_1	integrase	integration and excision
UHGV-2175788_54	UniRef90	UniRef90_A0A415G6Y0	Site-specific integrase	NA
UHGV-2175788_54	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-2175788_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2175788_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2175788_54	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA