UHGV-2176973

Genome information

Genome length 23,275 bps

CDS count 39

Completeness 55.34% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-2176973
vOTU ID	vOTU-036813
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029873\|Ga0245321_101443
BioSample	SAMEA3449371
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.89
Jumbo phage	No

Genome content
Genome length	23,275 bps
GC content	54.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	89.29%
Average CDS length	537.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2176973_1	PHROG	phrog_22978	NA	unknown function
UHGV-2176973_1	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-2176973_2	PHROG	phrog_3754	NA	unknown function
UHGV-2176973_2	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-2176973_3	PHROG	phrog_21718	NA	unknown function
UHGV-2176973_3	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-2176973_4	PHROG	phrog_22984	NA	unknown function
UHGV-2176973_5	PHROG	phrog_16490	NA	unknown function
UHGV-2176973_5	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-2176973_6	PHROG	phrog_20016	NA	unknown function
UHGV-2176973_6	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2176973_6	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-2176973_6	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2176973_7	PHROG	phrog_28802	NA	unknown function
UHGV-2176973_7	Structural annotation	PF12510	NA	NA
UHGV-2176973_8	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-2176973_9	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2176973_9	PHROG	phrog_95	integrase	integration and excision
UHGV-2176973_9	UniRef90	UniRef90_A0A1C6HT72	Resolvase, N terminal domain	NA
UHGV-2176973_9	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2176973_9	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2176973_9	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2176973_9	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2176973_9	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-2176973_10	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-2176973_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2176973_10	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-2176973_11	KOfam	K07448	mrr; restriction system protein	NA
UHGV-2176973_11	PHROG	phrog_19856	NA	unknown function
UHGV-2176973_11	UniRef90	UniRef90_A0A2Z4Q9W7	Restriction endonuclease	NA
UHGV-2176973_11	eggNOG-mapper	397290.C810_01426	Restriction endonuclease	NA
UHGV-2176973_11	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2176973_11	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-2176973_11	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-2176973_11	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-2176973_11	Structural annotation	PF04471, NF002876, COG1787	NA	NA
UHGV-2176973_13	eggNOG-mapper	1519439.JPJG01000061_gene1989	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2176973_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2176973_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2176973_13	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2176973_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2176973_14	UniRef90	UniRef90_A0A328UFC2	HTH cro/C1-type domain-containing protein	NA
UHGV-2176973_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2176973_14	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2176973_14	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2176973_15	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-2176973_15	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-2176973_17	PHROG	phrog_22529	NA	unknown function
UHGV-2176973_17	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-2176973_17	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-2176973_17	Pfam	PF06725	3D domain	3D
UHGV-2176973_17	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-2176973_17	Structural annotation	COG3584	NA	NA
UHGV-2176973_19	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-2176973_19	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2176973_19	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-2176973_21	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2176973_21	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-2176973_21	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-2176973_21	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2176973_21	Structural annotation	PF05565	NA	NA
UHGV-2176973_22	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2176973_22	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-2176973_22	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-2176973_22	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-2176973_23	PHROG	phrog_1389	NA	unknown function
UHGV-2176973_23	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-2176973_23	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-2176973_25	PHROG	phrog_7566	NA	unknown function
UHGV-2176973_25	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-2176973_25	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-2176973_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2176973_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2176973_26	UniRef90	UniRef90_R6GTK3	Single-stranded DNA-binding protein	NA
UHGV-2176973_26	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-2176973_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2176973_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2176973_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2176973_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2176973_26	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2176973_28	PHROG	phrog_15768	NA	unknown function
UHGV-2176973_28	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-2176973_28	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-2176973_28	Pfam	PF19808	NA	DUF6291
UHGV-2176973_28	Structural annotation	PF19808	NA	NA
UHGV-2176973_30	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2176973_30	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-2176973_30	eggNOG-mapper	862517.HMPREF9225_1657	NA	NA
UHGV-2176973_30	Pfam	PF06356	NA	DUF1064
UHGV-2176973_30	Structural annotation	PF06356	NA	NA
UHGV-2176973_31	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2176973_31	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2176973_31	UniRef90	UniRef90_A0A8D9PDC5	Adenine specific DNA methyltransferase	NA
UHGV-2176973_31	eggNOG-mapper	1125725.HMPREF1325_1312	N-4 methylation of cytosine	NA
UHGV-2176973_31	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-2176973_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2176973_31	COG	COG0863	DNA modification methylase	NA
UHGV-2176973_31	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-2176973_33	KOfam	K21507	dmt; methyltransferase [EC:2.1.1.-]	NA
UHGV-2176973_33	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-2176973_33	UniRef90	UniRef90_A0A1C5KYC3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2176973_33	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-2176973_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2176973_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2176973_36	PHROG	phrog_38832	NA	unknown function
UHGV-2176973_36	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-2176973_36	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-2176973_38	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA