UHGV-2177943

Genome information

Genome length 26,545 bps

CDS count 35

Completeness 62.73% (medium-quality)

geNomad score 0.9458

Prediction confidence Confident

Genome information
Genome ID	UHGV-2177943
vOTU ID	vOTU-026254
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029860\|Ga0245305_1000186\|provirus_82921_109465
BioSample	SAMEA3449355
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9458
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.32
Jumbo phage	No

Genome content
Genome length	26,545 bps
GC content	40.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	85.82%
Average CDS length	657.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2177943_1	PHROG	phrog_5978	NA	unknown function
UHGV-2177943_1	UniRef90	UniRef90_R5T8G8	Filamentation induced by cAMP protein Fic	NA
UHGV-2177943_1	eggNOG-mapper	118005.AWNK01000004_gene1058	Filamentation induced by cAMP protein fic	NA
UHGV-2177943_1	Pfam	PF13784	Fic/DOC family N-terminal	Fic_N
UHGV-2177943_1	Pfam	PF02661	Fic/DOC family	Fic
UHGV-2177943_1	Pfam	PF21248	Protein adenylyltransferase SoFic-like, C-terminal domain	SoFic-like_C
UHGV-2177943_1	COG	COG3177	Fic family protein	NA
UHGV-2177943_1	Structural annotation	PF02661, PF13784, PF21248, MF_01819, NF040876, COG3177	NA	NA
UHGV-2177943_2	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-2177943_2	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-2177943_2	UniRef90	UniRef90_UPI0018C5578F	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-2177943_2	eggNOG-mapper	1235792.C808_05257	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-2177943_2	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-2177943_2	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-2177943_2	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-2177943_3	PHROG	phrog_5978	NA	unknown function
UHGV-2177943_3	UniRef90	UniRef90_D6KQ44	Toxin-antitoxin system, toxin component, Fic family	NA
UHGV-2177943_3	eggNOG-mapper	411465.PEPMIC_00508	Fic/DOC family	NA
UHGV-2177943_3	Pfam	PF13784	Fic/DOC family N-terminal	Fic_N
UHGV-2177943_3	Pfam	PF02661	Fic/DOC family	Fic
UHGV-2177943_3	COG	COG3177	Fic family protein	NA
UHGV-2177943_3	Structural annotation	PF02661, PF13784, PF21248, MF_01819, NF040876, COG3177	NA	NA
UHGV-2177943_4	PHROG	phrog_16230	replication protein	DNA, RNA and nucleotide metabolism
UHGV-2177943_4	UniRef90	UniRef90_R5D8H2	Phage P1-related protein	NA
UHGV-2177943_4	eggNOG-mapper	649639.Bcell_2719	NA	NA
UHGV-2177943_5	PHROG	phrog_3732	NA	unknown function
UHGV-2177943_5	UniRef90	UniRef90_A0A3A9HPK4	NA	NA
UHGV-2177943_5	eggNOG-mapper	1280692.AUJL01000004_gene825	NA	NA
UHGV-2177943_5	Pfam	PF12686	NA	DUF3800
UHGV-2177943_5	Structural annotation	MF_00053, TIGR00729, COG1039	NA	NA
UHGV-2177943_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2177943_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2177943_6	UniRef90	UniRef90_UPI001F1C04A9	XRE family transcriptional regulator	NA
UHGV-2177943_6	eggNOG-mapper	1321820.HMPREF1983_00958	Helix-turn-helix XRE-family like proteins	NA
UHGV-2177943_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2177943_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2177943_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2177943_6	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-2177943_7	UniRef90	UniRef90_A0A848C2U3	Helix-turn-helix transcriptional regulator	NA
UHGV-2177943_7	eggNOG-mapper	864563.HMPREF9166_0598	DNA-binding helix-turn-helix protein	NA
UHGV-2177943_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2177943_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2177943_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2177943_9	PHROG	phrog_2232	NA	unknown function
UHGV-2177943_9	UniRef90	UniRef90_UPI00048D0E12	NA	NA
UHGV-2177943_9	eggNOG-mapper	561230.PC1_2623	NA	NA
UHGV-2177943_9	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-2177943_12	PHROG	phrog_9188	NA	unknown function
UHGV-2177943_12	Structural annotation	PF11023	NA	NA
UHGV-2177943_15	UniRef90	UniRef90_UPI000C9ADD73	NA	NA
UHGV-2177943_15	eggNOG-mapper	663278.Ethha_0449	NA	NA
UHGV-2177943_15	Pfam	PF13031	NA	DUF3892
UHGV-2177943_16	PHROG	phrog_7735	excisionase	integration and excision
UHGV-2177943_16	eggNOG-mapper	1443125.Z962_05785	NA	NA
UHGV-2177943_16	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2177943_16	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-2177943_17	PHROG	phrog_14367	NA	unknown function
UHGV-2177943_17	UniRef90	UniRef90_E4L8C9	LysM domain-containing protein	NA
UHGV-2177943_17	eggNOG-mapper	1009370.ALO_02386	LysM domain	NA
UHGV-2177943_17	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-2177943_17	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-2177943_20	PHROG	phrog_633	transcriptional regulator	transcription regulation
UHGV-2177943_20	eggNOG-mapper	1401067.HMPREF0872_06890	NA	NA
UHGV-2177943_20	Structural annotation	PF04703, MF_00732, NF033788, COG2345	NA	NA
UHGV-2177943_21	PHROG	phrog_674	NA	unknown function
UHGV-2177943_21	UniRef90	UniRef90_UPI0019577DA3	NA	NA
UHGV-2177943_21	eggNOG-mapper	318464.IO99_00465	NA	NA
UHGV-2177943_21	Pfam	PF07083	NA	DUF1351
UHGV-2177943_21	Structural annotation	PF07083	NA	NA
UHGV-2177943_22	PHROG	phrog_1366	NA	unknown function
UHGV-2177943_22	UniRef90	UniRef90_R5T4I4	AAA domain-containing protein	NA
UHGV-2177943_22	eggNOG-mapper	1123288.SOV_1c03840	AAA domain	NA
UHGV-2177943_22	Pfam	PF13479	AAA domain	AAA_24
UHGV-2177943_22	COG	COG0468	RecA/RadA recombinase	NA
UHGV-2177943_22	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2177943_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2177943_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2177943_23	UniRef90	UniRef90_R5T9W3	Single-stranded DNA-binding protein	NA
UHGV-2177943_23	eggNOG-mapper	657322.FPR_24250	Single-stranded DNA-binding protein	NA
UHGV-2177943_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2177943_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2177943_23	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-2177943_24	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-2177943_24	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2177943_24	UniRef90	UniRef90_R5SL79	Type III restriction enzyme res subunit	NA
UHGV-2177943_24	eggNOG-mapper	349161.Dred_2616	type III restriction enzyme, res subunit	NA
UHGV-2177943_24	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2177943_24	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2177943_24	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2177943_24	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2177943_24	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2177943_25	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2177943_25	UniRef90	UniRef90_R5SSW5	VRR-NUC domain-containing protein	NA
UHGV-2177943_25	eggNOG-mapper	679201.HMPREF9334_00465	VRR-NUC domain	NA
UHGV-2177943_25	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2177943_25	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2177943_26	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2177943_26	UniRef90	UniRef90_UPI0019578D90	NA	NA
UHGV-2177943_26	eggNOG-mapper	679201.HMPREF9334_00466	NA	NA
UHGV-2177943_26	Pfam	PF06048	NA	DUF927
UHGV-2177943_26	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2177943_26	COG	COG5519	NA	NA
UHGV-2177943_26	Structural annotation	PF06048, PF16793, PF18662, MF_00700, NF040561, TIGR00368, COG5519, COG1467	NA	NA
UHGV-2177943_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2177943_28	UniRef90	UniRef90_A0A892AKX3	NA	NA
UHGV-2177943_28	eggNOG-mapper	592028.GCWU000321_01368	NA	NA
UHGV-2177943_28	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2177943_29	UniRef90	UniRef90_A0A355GVT5	ATP-binding protein	NA
UHGV-2177943_29	eggNOG-mapper	370438.PTH_2497	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex	NA
UHGV-2177943_29	COG	COG0323	DNA mismatch repair ATPase MutL	NA
UHGV-2177943_29	Structural annotation	MF_00505, NF003555, COG0323	NA	NA
UHGV-2177943_30	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-2177943_30	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-2177943_30	UniRef90	UniRef90_A0A1M7YBS6	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-2177943_30	eggNOG-mapper	1064535.MELS_1090	NA	NA
UHGV-2177943_30	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-2177943_30	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-2177943_31	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-2177943_31	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-2177943_31	UniRef90	UniRef90_UPI0018C4DBE6	phage terminase large subunit family protein	NA
UHGV-2177943_31	eggNOG-mapper	1280706.AUJE01000010_gene653	Phage terminase large subunit (GpA)	NA
UHGV-2177943_31	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-2177943_31	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-2177943_31	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-2177943_31	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-2177943_31	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-2177943_32	PHROG	phrog_3896	NA	unknown function
UHGV-2177943_32	eggNOG-mapper	476272.RUMHYD_01985	NA	NA
UHGV-2177943_33	eggNOG-mapper	1405498.SSIM_07590	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-2177943_33	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2177943_34	UniRef90	UniRef90_UPI000F563D62	CopG family transcriptional regulator	NA
UHGV-2177943_34	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-2177943_34	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-2177943_35	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2177943_35	UniRef90	UniRef90_A0A833C9P1	Rha family transcriptional regulator	NA
UHGV-2177943_35	eggNOG-mapper	1235792.C808_03051	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-2177943_35	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2177943_35	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2177943_35	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA