UHGV-2178287

Genome information

Genome length 31,657 bps

CDS count 40

Completeness 77.72% (medium-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-2178287
vOTU ID	vOTU-036146
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029819\|Ga0245024_100112\|provirus_84664_129819
BioSample	SAMEA3708868
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.84
Jumbo phage	No

Genome content
Genome length	31,657 bps
GC content	44.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	93.44%
Average CDS length	743.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2178287_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2178287_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2178287_1	UniRef90	UniRef90_A0A3D0PWR7	Recombinase family protein	NA
UHGV-2178287_1	eggNOG-mapper	1449050.JNLE01000005_gene3962	Recombinase	NA
UHGV-2178287_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2178287_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2178287_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2178287_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2178287_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2178287_2	PHROG	phrog_2695	NA	unknown function
UHGV-2178287_2	UniRef90	UniRef90_A0A2S5CW93	SIR2_2 domain-containing protein	NA
UHGV-2178287_2	eggNOG-mapper	877421.AUJT01000014_gene2876	SIR2-like domain	NA
UHGV-2178287_2	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-2178287_2	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-2178287_2	COG	COG4088	tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein)	NA
UHGV-2178287_2	Structural annotation	PF13289	NA	NA
UHGV-2178287_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2178287_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2178287_4	UniRef90	UniRef90_A0A373V4F8	Helix-turn-helix domain-containing protein	NA
UHGV-2178287_4	eggNOG-mapper	697329.Rumal_3450	NA	NA
UHGV-2178287_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2178287_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2178287_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2178287_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2178287_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2178287_5	UniRef90	UniRef90_A0A0M6WGZ2	HTH_7 domain-containing protein	NA
UHGV-2178287_5	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-2178287_5	Pfam	PF21716	Probable addiction module antidote protein	dnstrm_HI1420
UHGV-2178287_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2178287_7	eggNOG-mapper	1262449.CP6013_3197	NA	NA
UHGV-2178287_11	PHROG	phrog_27517	NA	unknown function
UHGV-2178287_12	PHROG	phrog_38338	NA	unknown function
UHGV-2178287_12	eggNOG-mapper	693746.OBV_25410	NA	NA
UHGV-2178287_13	PHROG	phrog_8470	NA	unknown function
UHGV-2178287_13	UniRef90	UniRef90_UPI0019175B9C	PcfJ domain-containing protein	NA
UHGV-2178287_13	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-2178287_13	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2178287_13	Structural annotation	PF14284	NA	NA
UHGV-2178287_14	PHROG	phrog_15609	NA	unknown function
UHGV-2178287_14	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-2178287_14	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-2178287_14	Pfam	PF11300	NA	DUF3102
UHGV-2178287_14	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2178287_15	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2178287_15	PHROG	phrog_1499	NA	unknown function
UHGV-2178287_15	UniRef90	UniRef90_D4JVK7	AAA_23 domain-containing protein	NA
UHGV-2178287_15	eggNOG-mapper	1262914.BN533_01950	AAA domain	NA
UHGV-2178287_15	Pfam	PF13476	AAA domain	AAA_23
UHGV-2178287_15	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2178287_15	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2178287_16	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2178287_16	UniRef90	UniRef90_UPI001896F7FA	AAA family ATPase	NA
UHGV-2178287_16	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-2178287_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-2178287_16	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2178287_17	PHROG	phrog_2698	NA	unknown function
UHGV-2178287_17	UniRef90	UniRef90_A0A3D1HDU6	NA	NA
UHGV-2178287_17	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-2178287_17	Structural annotation	PF05037	NA	NA
UHGV-2178287_18	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2178287_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2178287_18	UniRef90	UniRef90_D4JVK4	DNA or RNA helicases of superfamily II	NA
UHGV-2178287_18	eggNOG-mapper	394503.Ccel_3307	helicase	NA
UHGV-2178287_18	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2178287_18	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2178287_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2178287_18	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2178287_18	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2178287_19	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2178287_19	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2178287_19	UniRef90	UniRef90_A0A174ZV32	Regulatory protein repA	NA
UHGV-2178287_19	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-2178287_19	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2178287_19	Pfam	PF13481	AAA domain	AAA_25
UHGV-2178287_19	COG	COG3598	RecA-family ATPase	NA
UHGV-2178287_19	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2178287_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2178287_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2178287_20	UniRef90	UniRef90_B0MKW2	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-2178287_20	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-2178287_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2178287_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2178287_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2178287_21	PHROG	phrog_22040	NA	unknown function
UHGV-2178287_21	Structural annotation	PF02559, NF008636, COG4568	NA	NA
UHGV-2178287_22	PHROG	phrog_22543	NA	unknown function
UHGV-2178287_23	UniRef90	UniRef90_B0MKX7	NA	NA
UHGV-2178287_24	Structural annotation	PF07374	NA	NA
UHGV-2178287_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2178287_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2178287_25	UniRef90	UniRef90_A0A174ZU67	Terminase small subunit	NA
UHGV-2178287_25	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-2178287_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2178287_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2178287_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2178287_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2178287_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2178287_26	UniRef90	UniRef90_A0A174ZXT9	Phage terminase, large subunit, PBSX family	NA
UHGV-2178287_26	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-2178287_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2178287_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2178287_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2178287_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-2178287_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2178287_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-2178287_27	UniRef90	UniRef90_A0A174ZZR5	Phage portal protein, SPP1 family	NA
UHGV-2178287_27	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-2178287_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2178287_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2178287_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2178287_28	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-2178287_28	UniRef90	UniRef90_B0MPW0	Phage protein F-like protein	NA
UHGV-2178287_28	eggNOG-mapper	1235800.C819_00488	Phage Mu protein F like protein	NA
UHGV-2178287_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2178287_28	Pfam	PF21814	NA	DUF6883
UHGV-2178287_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2178287_28	COG	COG2369	NA	NA
UHGV-2178287_28	Structural annotation	PF06152	NA	NA
UHGV-2178287_29	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-2178287_30	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2178287_30	UniRef90	UniRef90_A0A371P084	NA	NA
UHGV-2178287_30	eggNOG-mapper	1235800.C819_00486	NA	NA
UHGV-2178287_30	Pfam	PF14265	NA	DUF4355
UHGV-2178287_30	Structural annotation	PF14265	NA	NA
UHGV-2178287_31	PHROG	phrog_212	major head protein	head and packaging
UHGV-2178287_31	UniRef90	UniRef90_A0A8J6JGV9	Phage capsid protein	NA
UHGV-2178287_31	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-2178287_31	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2178287_32	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2178287_32	UniRef90	UniRef90_A0A175A0L9	Phage gp6-like head-tail connector protein	NA
UHGV-2178287_32	eggNOG-mapper	764562.D7RWJ1_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-2178287_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2178287_32	Structural annotation	TIGR01560	NA	NA
UHGV-2178287_33	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2178287_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2178287_34	UniRef90	UniRef90_A0A174ZQK8	Mu-like prophage protein gpG	NA
UHGV-2178287_34	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2178287_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2178287_34	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2178287_35	Pfam	PF11367	NA	DUF3168
UHGV-2178287_35	Structural annotation	PF05657	NA	NA
UHGV-2178287_36	PHROG	phrog_158	major tail protein	tail
UHGV-2178287_36	UniRef90	UniRef90_A0A174ZXR0	Phage tail protein	NA
UHGV-2178287_36	eggNOG-mapper	1158607.UAU_01767	Phage tail tube protein, TTP	NA
UHGV-2178287_36	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-2178287_36	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2178287_38	UniRef90	UniRef90_UPI0016860472	NA	NA
UHGV-2178287_38	eggNOG-mapper	1121947.AUHK01000002_gene942	NA	NA
UHGV-2178287_38	Pfam	PF19591	NA	DUF6096
UHGV-2178287_38	Structural annotation	PF19591	NA	NA
UHGV-2178287_39	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-2178287_39	eggNOG-mapper	1215915.BN193_09055	phage tail tape measure protein	NA
UHGV-2178287_39	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-2178287_40	PHROG	phrog_1194	NA	unknown function
UHGV-2178287_40	eggNOG-mapper	1499683.CCFF01000017_gene2921	NA	NA
UHGV-2178287_40	Pfam	PF20458	NA	DUF6711