UHGV-2178802

Genome information

Genome length 31,240 bps

CDS count 52

Completeness 82.86% (medium-quality)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-2178802
vOTU ID	vOTU-042205
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029841\|Ga0245272_100552\|provirus_31581_62820
BioSample	SAMEA3449323
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.1
Jumbo phage	No

Genome content
Genome length	31,240 bps
GC content	40.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.14%
Average CDS length	557.54 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2178802_1	KOfam	K14059	int; integrase	NA
UHGV-2178802_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2178802_1	UniRef90	UniRef90_UPI0015711453	tyrosine-type recombinase/integrase	NA
UHGV-2178802_1	eggNOG-mapper	742740.HMPREF9474_02388	Belongs to the 'phage' integrase family	NA
UHGV-2178802_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2178802_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2178802_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2178802_2	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-2178802_2	UniRef90	UniRef90_A0A1Y3T5U1	NA	NA
UHGV-2178802_2	eggNOG-mapper	411470.RUMGNA_02177	belongs to the thioredoxin family	NA
UHGV-2178802_2	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-2178802_3	PHROG	phrog_16443	NA	unknown function
UHGV-2178802_3	eggNOG-mapper	1423814.HMPREF0549_0133	NA	NA
UHGV-2178802_3	AcrCatalog	cluster_1135	NA	NA
UHGV-2178802_4	Pfam	PF17854	FtsK alpha domain	FtsK_alpha
UHGV-2178802_5	PHROG	phrog_87	metallo-protease	other
UHGV-2178802_5	UniRef90	UniRef90_UPI001C0252A2	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2178802_5	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-2178802_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2178802_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2178802_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2178802_6	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-2178802_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2178802_6	UniRef90	UniRef90_UPI001C012D64	helix-turn-helix transcriptional regulator	NA
UHGV-2178802_6	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-2178802_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2178802_6	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2178802_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2178802_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2178802_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2178802_7	UniRef90	UniRef90_UPI001C0332DB	helix-turn-helix domain-containing protein	NA
UHGV-2178802_7	eggNOG-mapper	1536772.R70723_06540	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2178802_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2178802_7	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-2178802_9	PHROG	phrog_6058	NA	unknown function
UHGV-2178802_9	UniRef90	UniRef90_A0A374E7W1	XRE family transcriptional regulator	NA
UHGV-2178802_9	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-2178802_9	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2178802_9	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-2178802_12	Structural annotation	PF16826	NA	NA
UHGV-2178802_14	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2178802_14	UniRef90	UniRef90_A0A173ZAF2	Putative phage-type endonuclease	NA
UHGV-2178802_14	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-2178802_14	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2178802_14	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2178802_14	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2178802_14	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2178802_15	PHROG	phrog_674	NA	unknown function
UHGV-2178802_15	UniRef90	UniRef90_UPI0018ABB762	NA	NA
UHGV-2178802_15	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-2178802_15	Pfam	PF07083	NA	DUF1351
UHGV-2178802_15	Structural annotation	PF07083	NA	NA
UHGV-2178802_16	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2178802_16	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2178802_16	UniRef90	UniRef90_A0A173ZB66	p33	NA
UHGV-2178802_16	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-2178802_16	Pfam	PF03837	RecT family	RecT
UHGV-2178802_16	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2178802_16	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2178802_16	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2178802_17	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2178802_17	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-2178802_18	PHROG	phrog_1029	NA	unknown function
UHGV-2178802_18	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-2178802_18	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2178802_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2178802_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2178802_19	UniRef90	UniRef90_A0A173ZD06	Holliday junction resolvase	NA
UHGV-2178802_19	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-2178802_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2178802_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2178802_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2178802_20	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2178802_20	UniRef90	UniRef90_A0A173ZAT7	NA	NA
UHGV-2178802_20	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-2178802_20	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2178802_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2178802_20	Structural annotation	PF14297	NA	NA
UHGV-2178802_21	PHROG	phrog_26445	NA	unknown function
UHGV-2178802_21	UniRef90	UniRef90_A0A412QC38	Helix-turn-helix domain-containing protein	NA
UHGV-2178802_21	eggNOG-mapper	411461.DORFOR_00012	NA	NA
UHGV-2178802_21	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-2178802_21	Structural annotation	PF13384, MF_00475, TIGR02531, COG1710	NA	NA
UHGV-2178802_22	eggNOG-mapper	1232453.BAIF02000057_gene1147	NA	NA
UHGV-2178802_23	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2178802_23	UniRef90	UniRef90_UPI0018AC8B9B	Lar family restriction alleviation protein	NA
UHGV-2178802_23	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2178802_23	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-2178802_23	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-2178802_25	PHROG	phrog_15198	NA	unknown function
UHGV-2178802_25	UniRef90	UniRef90_A0A414U7F1	NA	NA
UHGV-2178802_25	Pfam	PF04448	NA	DUF551
UHGV-2178802_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2178802_27	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-2178802_27	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-2178802_27	Structural annotation	PF02996	NA	NA
UHGV-2178802_28	PHROG	phrog_13260	NA	unknown function
UHGV-2178802_28	UniRef90	UniRef90_A0A3R5TCR3	FunZ	NA
UHGV-2178802_28	eggNOG-mapper	572479.Hprae_1054	NA	NA
UHGV-2178802_28	Structural annotation	PF20703, MF_01407, NF001624, COG1474	NA	NA
UHGV-2178802_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2178802_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2178802_29	UniRef90	UniRef90_A0A173YJ64	Terminase small subunit	NA
UHGV-2178802_29	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-2178802_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2178802_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2178802_29	Structural annotation	PF03592	NA	NA
UHGV-2178802_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2178802_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2178802_30	UniRef90	UniRef90_UPI0006B50694	PBSX family phage terminase large subunit	NA
UHGV-2178802_30	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-2178802_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2178802_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2178802_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2178802_31	PHROG	phrog_212	major head protein	head and packaging
UHGV-2178802_31	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-2178802_33	PHROG	phrog_1236	head protein	head and packaging
UHGV-2178802_33	eggNOG-mapper	1235800.C819_02232	NA	NA
UHGV-2178802_33	Structural annotation	PF05135	NA	NA
UHGV-2178802_34	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-2178802_34	UniRef90	UniRef90_UPI00156FFBE5	head-tail adaptor protein	NA
UHGV-2178802_34	eggNOG-mapper	1235800.C819_02231	NA	NA
UHGV-2178802_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2178802_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2178802_35	UniRef90	UniRef90_UPI00156E66A4	HK97 gp10 family phage protein	NA
UHGV-2178802_35	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-2178802_35	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2178802_36	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-2178802_36	Structural annotation	PF12691	NA	NA
UHGV-2178802_37	PHROG	phrog_885	major tail protein	tail
UHGV-2178802_37	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-2178802_37	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2178802_38	PHROG	phrog_1021	NA	unknown function
UHGV-2178802_39	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-2178802_40	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-2178802_40	UniRef90	UniRef90_UPI0015705DAC	phage tail tape measure protein	NA
UHGV-2178802_40	eggNOG-mapper	1122146.AUHP01000010_gene1066	Phage tail tape measure protein	NA
UHGV-2178802_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2178802_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2178802_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2178802_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2178802_41	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-2178802_41	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-2178802_41	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2178802_42	PHROG	phrog_538	minor tail protein	tail
UHGV-2178802_42	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-2178802_42	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-2178802_42	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2178802_42	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2178802_43	PHROG	phrog_9994	NA	unknown function
UHGV-2178802_43	UniRef90	UniRef90_UPI000C76CD77	H-type lectin domain-containing protein	NA
UHGV-2178802_43	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-2178802_43	Structural annotation	PF20747	NA	NA
UHGV-2178802_45	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-2178802_45	PHROG	phrog_1	integrase	integration and excision
UHGV-2178802_45	UniRef90	UniRef90_UPI00156FF4F8	tyrosine-type recombinase/integrase	NA
UHGV-2178802_45	eggNOG-mapper	411461.DORFOR_00731	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2178802_45	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2178802_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2178802_45	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2178802_45	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2178802_48	PHROG	phrog_27545	NA	unknown function
UHGV-2178802_48	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-2178802_48	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-2178802_48	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2178802_49	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-2178802_49	Structural annotation	PF20124	NA	NA
UHGV-2178802_50	PHROG	phrog_4105	NA	unknown function
UHGV-2178802_50	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-2178802_51	PHROG	phrog_1129	holin	lysis
UHGV-2178802_51	UniRef90	UniRef90_A0A893W7Y5	Phage holin family protein	NA
UHGV-2178802_51	eggNOG-mapper	742733.HMPREF9469_05010	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2178802_51	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2178802_51	Structural annotation	PF16079	NA	NA
UHGV-2178802_52	KOfam	K07273	acm; lysozyme	NA
UHGV-2178802_52	PHROG	phrog_291	endolysin	lysis
UHGV-2178802_52	UniRef90	UniRef90_A0A3R6E0Z5	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2178802_52	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-2178802_52	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2178802_52	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2178802_52	Pfam	PF01476	LysM domain	LysM
UHGV-2178802_52	COG	COG1388	LysM repeat	NA
UHGV-2178802_52	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA