UHGV-2179925

Genome information

Genome length 37,365 bps

CDS count 55

Completeness 97.47% (high-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-2179925
vOTU ID	vOTU-013760
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029841\|Ga0245272_100681\|provirus_18629_55993
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.47% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.3
Jumbo phage	No

Genome content
Genome length	37,365 bps
GC content	33.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.14%
Average CDS length	624.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2179925_1	PHROG	phrog_18586	NA	unknown function
UHGV-2179925_1	UniRef90	UniRef90_K0XKW7	Mrr_cat domain-containing protein	NA
UHGV-2179925_1	eggNOG-mapper	1410661.JNKW01000001_gene491	NA	NA
UHGV-2179925_1	Structural annotation	PF04471, COG1715	NA	NA
UHGV-2179925_2	eggNOG-mapper	1235802.C823_05251	NA	NA
UHGV-2179925_2	Structural annotation	PF19363, COG3355	NA	NA
UHGV-2179925_3	UniRef90	UniRef90_M9LXJ4	Polyketide synthase module	NA
UHGV-2179925_3	eggNOG-mapper	1410661.JNKW01000001_gene489	NA	NA
UHGV-2179925_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2179925_5	PHROG	phrog_670	endolysin	lysis
UHGV-2179925_5	UniRef90	UniRef90_A0A348ZBJ3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2179925_5	eggNOG-mapper	1232453.BAIF02000030_gene2529	Ami_2	NA
UHGV-2179925_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2179925_5	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-2179925_5	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2179925_6	PHROG	phrog_199	holin	lysis
UHGV-2179925_6	UniRef90	UniRef90_A0A348ZBJ4	Holin	NA
UHGV-2179925_6	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-2179925_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2179925_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2179925_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2179925_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2179925_9	PHROG	phrog_18190	NA	unknown function
UHGV-2179925_9	UniRef90	UniRef90_UPI000F53DFF3	tail fiber domain-containing protein	NA
UHGV-2179925_9	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2179925_10	PHROG	phrog_1194	NA	unknown function
UHGV-2179925_10	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-2179925_10	Pfam	PF20458	NA	DUF6711
UHGV-2179925_10	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2179925_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2179925_11	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-2179925_11	COG	COG5412	Phage-related protein	NA
UHGV-2179925_12	PHROG	phrog_5319	outer membrane protein	other
UHGV-2179925_12	UniRef90	UniRef90_A0A1Q6JN93	zinc_ribbon_2 domain-containing protein	NA
UHGV-2179925_12	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-2179925_12	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-2179925_12	COG	COG3103	NA	NA
UHGV-2179925_13	PHROG	phrog_706	NA	unknown function
UHGV-2179925_13	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-2179925_13	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-2179925_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2179925_13	Structural annotation	PF06854	NA	NA
UHGV-2179925_14	PHROG	phrog_11299	NA	unknown function
UHGV-2179925_14	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2179925_14	Structural annotation	PF10666	NA	NA
UHGV-2179925_15	PHROG	phrog_3099	NA	unknown function
UHGV-2179925_15	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-2179925_15	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-2179925_16	PHROG	phrog_3266	tail completion	connector
UHGV-2179925_16	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-2179925_16	Structural annotation	PF20765	NA	NA
UHGV-2179925_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2179925_17	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-2179925_17	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2179925_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2179925_17	Structural annotation	PF11114	NA	NA
UHGV-2179925_18	PHROG	phrog_3366	NA	unknown function
UHGV-2179925_18	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-2179925_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2179925_19	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-2179925_19	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-2179925_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-2179925_20	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-2179925_20	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2179925_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2179925_21	UniRef90	UniRef90_UPI001B3C6D0D	phage scaffolding protein	NA
UHGV-2179925_21	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-2179925_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2179925_21	Structural annotation	PF06810	NA	NA
UHGV-2179925_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2179925_23	UniRef90	UniRef90_UPI001B3C97A7	phage minor capsid protein	NA
UHGV-2179925_23	eggNOG-mapper	742765.HMPREF9457_02121	NA	NA
UHGV-2179925_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2179925_23	COG	COG2369	NA	NA
UHGV-2179925_23	Structural annotation	PF06152, COG2369	NA	NA
UHGV-2179925_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-2179925_24	UniRef90	UniRef90_UPI001B3C997D	phage capsid protein	NA
UHGV-2179925_24	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-2179925_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2179925_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2179925_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2179925_25	UniRef90	UniRef90_UPI001B3C8BA8	terminase family protein	NA
UHGV-2179925_25	eggNOG-mapper	1304866.K413DRAFT_3034	Phage terminase, large subunit, PBSX family	NA
UHGV-2179925_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2179925_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2179925_25	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2179925_26	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2179925_26	UniRef90	UniRef90_UPI001B3C9B19	helix-turn-helix domain-containing protein	NA
UHGV-2179925_26	eggNOG-mapper	374526.A5GYP7_9CAUD	endonuclease activity	NA
UHGV-2179925_26	Structural annotation	PF07141	NA	NA
UHGV-2179925_29	PHROG	phrog_8680	NA	unknown function
UHGV-2179925_29	UniRef90	UniRef90_A0A373KTP5	NA	NA
UHGV-2179925_29	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2179925_29	Pfam	PF14386	NA	DUF4417
UHGV-2179925_29	Structural annotation	PF14386	NA	NA
UHGV-2179925_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2179925_30	UniRef90	UniRef90_A0A6B3W4B2	NA	NA
UHGV-2179925_30	eggNOG-mapper	1408424.JHYI01000032_gene3838	NA	NA
UHGV-2179925_30	Pfam	PF07374	NA	DUF1492
UHGV-2179925_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2179925_30	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2179925_31	Structural annotation	PF10571	NA	NA
UHGV-2179925_32	Structural annotation	PF09889	NA	NA
UHGV-2179925_35	PHROG	phrog_277	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-2179925_35	UniRef90	UniRef90_K2G5E4	Phage_rep_O domain-containing protein	NA
UHGV-2179925_35	eggNOG-mapper	1230341.MJ3_13494	Bacteriophage replication protein O	NA
UHGV-2179925_35	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-2179925_35	NCBIFam	TIGR01610.1	phage replication protein O, N-terminal domain	NA
UHGV-2179925_35	Structural annotation	PF01978, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-2179925_36	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2179925_36	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-2179925_36	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-2179925_36	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-2179925_36	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-2179925_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2179925_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2179925_37	UniRef90	UniRef90_A0A7C7EMB2	Single-stranded DNA-binding protein	NA
UHGV-2179925_37	eggNOG-mapper	428125.CLOLEP_03546	Single-stranded DNA-binding protein	NA
UHGV-2179925_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2179925_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2179925_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2179925_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2179925_37	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2179925_38	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2179925_38	UniRef90	UniRef90_A0A3D0X749	NA	NA
UHGV-2179925_38	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-2179925_38	Pfam	PF12684	NA	DUF3799
UHGV-2179925_38	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2179925_38	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-2179925_39	PHROG	phrog_21613	NA	unknown function
UHGV-2179925_39	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-2179925_40	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2179925_40	PHROG	phrog_1499	NA	unknown function
UHGV-2179925_40	UniRef90	UniRef90_A0A315Y1S7	Exonuclease SbcC	NA
UHGV-2179925_40	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-2179925_40	Pfam	PF13476	AAA domain	AAA_23
UHGV-2179925_40	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-2179925_40	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-2179925_45	PHROG	phrog_2232	NA	unknown function
UHGV-2179925_45	UniRef90	UniRef90_UPI00164B82D7	NA	NA
UHGV-2179925_45	eggNOG-mapper	218284.CCDN010000005_gene3396	NA	NA
UHGV-2179925_45	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-2179925_45	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-2179925_47	UniRef90	UniRef90_A0A1Y4SQ86	NA	NA
UHGV-2179925_47	eggNOG-mapper	646413.C5IUM3_9CAUD	NA	NA
UHGV-2179925_47	Pfam	PF05339	NA	DUF739
UHGV-2179925_47	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-2179925_48	PHROG	phrog_5079	NA	unknown function
UHGV-2179925_48	eggNOG-mapper	883112.HMPREF9707_01632	NA	NA
UHGV-2179925_49	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2179925_49	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2179925_49	UniRef90	UniRef90_A0A1Y4HYP5	Repressor LexA	NA
UHGV-2179925_49	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-2179925_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2179925_49	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2179925_49	NCBIFam	TIGR00498.1	transcriptional repressor LexA	NA
UHGV-2179925_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2179925_49	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2179925_50	Structural annotation	PF20505, MF_00194, NF001462, COG2974	NA	NA
UHGV-2179925_51	Structural annotation	PF15968	NA	NA
UHGV-2179925_52	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2179925_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2179925_52	UniRef90	UniRef90_UPI00164BD4EE	helix-turn-helix domain-containing protein	NA
UHGV-2179925_52	eggNOG-mapper	931626.Awo_c14370	Helix-turn-helix XRE-family like proteins	NA
UHGV-2179925_52	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2179925_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2179925_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2179925_53	UniRef90	UniRef90_A0A348ZC97	UDP-N-acetylglucosamine kinase	NA
UHGV-2179925_53	eggNOG-mapper	1408437.JNJN01000002_gene1419	zeta toxin	NA
UHGV-2179925_53	Pfam	PF06414	Zeta toxin	Zeta_toxin
UHGV-2179925_53	COG	COG4185	Predicted ABC-type ATPase or kinase	NA
UHGV-2179925_53	Structural annotation	PF06414, MF_00234, NF041574, COG4185	NA	NA
UHGV-2179925_54	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2179925_54	PHROG	phrog_95	integrase	integration and excision
UHGV-2179925_54	UniRef90	UniRef90_A0A354HPL0	Recombinase family protein	NA
UHGV-2179925_54	eggNOG-mapper	537013.CLOSTMETH_01697	Resolvase, N terminal domain	NA
UHGV-2179925_54	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2179925_54	Pfam	PF07508	Recombinase	Recombinase
UHGV-2179925_54	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2179925_54	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-2179925_55	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-2179925_55	PHROG	phrog_7573	NA	unknown function
UHGV-2179925_55	UniRef90	UniRef90_R7NRD0	Manganese containing catalase	NA
UHGV-2179925_55	eggNOG-mapper	1105031.HMPREF1141_2503	PFAM Manganese containing catalase	NA
UHGV-2179925_55	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-2179925_55	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA