UHGV-2180253

Genome information

Genome length 36,085 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-2180253
vOTU ID	vOTU-073609
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029794\|Ga0243854_1000493\|provirus_12371_48455
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.83
Jumbo phage	No

Genome content
Genome length	36,085 bps
GC content	59.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.53%
Average CDS length	677.40 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2180253_1	PHROG	phrog_15303	NA	unknown function
UHGV-2180253_2	PHROG	phrog_9428	NA	unknown function
UHGV-2180253_2	UniRef90	UniRef90_A0A3E2TBT5	Serine/threonine protein kinase	NA
UHGV-2180253_2	eggNOG-mapper	1226322.HMPREF1545_03573	NA	NA
UHGV-2180253_4	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2180253_4	UniRef90	UniRef90_A0A3E2XB99	NA	NA
UHGV-2180253_4	eggNOG-mapper	748224.HMPREF9436_01411	NA	NA
UHGV-2180253_4	Pfam	PF14359	NA	DUF4406
UHGV-2180253_4	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2180253_5	KOfam	K07273	acm; lysozyme	NA
UHGV-2180253_5	PHROG	phrog_291	endolysin	lysis
UHGV-2180253_5	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-2180253_5	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-2180253_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2180253_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2180253_5	Structural annotation	PF01183, COG3757	NA	NA
UHGV-2180253_6	PHROG	phrog_28526	NA	unknown function
UHGV-2180253_6	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-2180253_6	eggNOG-mapper	748224.HMPREF9436_00155	NA	NA
UHGV-2180253_8	PHROG	phrog_9534	head protein	head and packaging
UHGV-2180253_8	UniRef90	UniRef90_R6SMG3	Conserved domain protein	NA
UHGV-2180253_8	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-2180253_8	Structural annotation	PF21567, NF012201	NA	NA
UHGV-2180253_9	PHROG	phrog_538	minor tail protein	tail
UHGV-2180253_9	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2180253_9	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-2180253_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2180253_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2180253_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2180253_10	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-2180253_10	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-2180253_10	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2180253_11	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-2180253_11	UniRef90	UniRef90_A0A2J4JRN1	TMP_3 domain-containing protein	NA
UHGV-2180253_11	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-2180253_11	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2180253_11	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2180253_11	COG	COG5283	Phage-related tail protein	NA
UHGV-2180253_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2180253_12	PHROG	phrog_706	NA	unknown function
UHGV-2180253_12	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-2180253_12	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-2180253_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2180253_12	Structural annotation	PF06854	NA	NA
UHGV-2180253_13	PHROG	phrog_4450	NA	unknown function
UHGV-2180253_13	Structural annotation	PF20378	NA	NA
UHGV-2180253_14	PHROG	phrog_820	major tail protein	tail
UHGV-2180253_14	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-2180253_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2180253_15	PHROG	phrog_3266	tail completion	connector
UHGV-2180253_15	UniRef90	UniRef90_UPI000D830B30	chloramphenicol resistance protein	NA
UHGV-2180253_15	eggNOG-mapper	748224.HMPREF9436_03331	NA	NA
UHGV-2180253_15	Structural annotation	PF12691	NA	NA
UHGV-2180253_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2180253_16	UniRef90	UniRef90_A0A2A6Z736	Capsid protein	NA
UHGV-2180253_16	eggNOG-mapper	748224.HMPREF9436_03332	Minor capsid protein	NA
UHGV-2180253_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2180253_16	Structural annotation	PF11114	NA	NA
UHGV-2180253_17	PHROG	phrog_3366	NA	unknown function
UHGV-2180253_17	Structural annotation	PF20536	NA	NA
UHGV-2180253_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2180253_19	PHROG	phrog_267	major head protein	head and packaging
UHGV-2180253_19	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-2180253_19	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-2180253_19	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2180253_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2180253_20	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-2180253_20	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-2180253_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2180253_20	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2180253_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2180253_23	UniRef90	UniRef90_UPI001CBDED93	phage minor capsid protein	NA
UHGV-2180253_23	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-2180253_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2180253_23	COG	COG2369	NA	NA
UHGV-2180253_23	Structural annotation	PF06152	NA	NA
UHGV-2180253_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-2180253_24	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-2180253_24	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-2180253_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2180253_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2180253_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2180253_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2180253_25	UniRef90	UniRef90_A0A844EGH8	PBSX family phage terminase large subunit	NA
UHGV-2180253_25	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-2180253_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2180253_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2180253_25	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2180253_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2180253_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2180253_26	UniRef90	UniRef90_A0A2A7AI72	Terminase small subunit	NA
UHGV-2180253_26	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-2180253_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2180253_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2180253_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2180253_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2180253_27	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-2180253_27	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-2180253_27	Structural annotation	PF04545, MF_00674, NF005248, COG1595	NA	NA
UHGV-2180253_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2180253_28	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2180253_28	UniRef90	UniRef90_UPI00122CFAB3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2180253_28	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-2180253_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2180253_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2180253_28	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2180253_29	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2180253_29	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2180253_29	UniRef90	UniRef90_A0A2A6Z731	DNA primase	NA
UHGV-2180253_29	eggNOG-mapper	999413.HMPREF1094_00232	Primase C terminal 2 (PriCT-2)	NA
UHGV-2180253_29	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2180253_29	Pfam	PF13481	AAA domain	AAA_25
UHGV-2180253_29	COG	COG3598	RecA-family ATPase	NA
UHGV-2180253_29	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2180253_30	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2180253_30	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2180253_30	UniRef90	UniRef90_A0A3A6K1C0	DEAD/DEAH box helicase	NA
UHGV-2180253_30	eggNOG-mapper	610130.Closa_1369	DEAD-like helicases superfamily	NA
UHGV-2180253_30	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2180253_30	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2180253_30	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2180253_30	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2180253_30	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2180253_31	PHROG	phrog_2698	NA	unknown function
UHGV-2180253_31	UniRef90	UniRef90_A0A291T9B6	NA	NA
UHGV-2180253_31	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-2180253_31	Structural annotation	PF05037	NA	NA
UHGV-2180253_32	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2180253_32	UniRef90	UniRef90_UPI00122C2B12	ATP-binding protein	NA
UHGV-2180253_32	eggNOG-mapper	645991.Sgly_0321	AAA domain	NA
UHGV-2180253_32	Pfam	PF13479	AAA domain	AAA_24
UHGV-2180253_32	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2180253_33	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2180253_33	PHROG	phrog_1499	NA	unknown function
UHGV-2180253_33	UniRef90	UniRef90_A0A3A6KBP8	Chromosome segregation protein SMC	NA
UHGV-2180253_33	eggNOG-mapper	1235798.C817_04766	AAA ATPase domain	NA
UHGV-2180253_33	Pfam	PF13476	AAA domain	AAA_23
UHGV-2180253_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2180253_33	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2180253_34	eggNOG-mapper	663278.Ethha_2445	DNA binding	NA
UHGV-2180253_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2180253_38	PHROG	phrog_32852	NA	unknown function
UHGV-2180253_39	PHROG	phrog_6058	NA	unknown function
UHGV-2180253_39	UniRef90	UniRef90_E2ZIF6	HTH cro/C1-type domain-containing protein	NA
UHGV-2180253_39	eggNOG-mapper	748224.HMPREF9436_01450	NA	NA
UHGV-2180253_39	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2180253_39	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-2180253_40	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2180253_40	UniRef90	UniRef90_E2ZIF5	Phage regulatory protein, Rha family	NA
UHGV-2180253_40	eggNOG-mapper	748224.HMPREF9436_01449	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-2180253_40	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2180253_40	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2180253_40	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2180253_40	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-2180253_41	PHROG	phrog_3292	NA	unknown function
UHGV-2180253_41	UniRef90	UniRef90_A0A1G9YYC5	KTSC domain-containing protein	NA
UHGV-2180253_41	eggNOG-mapper	1121342.AUCO01000012_gene1704	KTSC domain	NA
UHGV-2180253_41	Pfam	PF13619	KTSC domain	KTSC
UHGV-2180253_41	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-2180253_41	Structural annotation	PF13619	NA	NA
UHGV-2180253_42	PHROG	phrog_5765	NA	unknown function
UHGV-2180253_42	UniRef90	UniRef90_UPI001D0EF465	BC1881 family protein	NA
UHGV-2180253_42	eggNOG-mapper	748727.CLJU_c31430	NA	NA
UHGV-2180253_42	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-2180253_44	Structural annotation	PF13601, MF_01819, TIGR03433, COG1695	NA	NA
UHGV-2180253_46	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2180253_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2180253_46	UniRef90	UniRef90_E2ZIF0	DNA-binding helix-turn-helix protein	NA
UHGV-2180253_46	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-2180253_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2180253_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2180253_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2180253_46	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2180253_48	PHROG	phrog_888	NA	unknown function
UHGV-2180253_48	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-2180253_48	eggNOG-mapper	1151292.QEW_1347	Short C-terminal domain	NA
UHGV-2180253_48	Pfam	PF14471	NA	DUF4428
UHGV-2180253_48	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-2180253_48	Structural annotation	PF15947, PF14471	NA	NA
UHGV-2180253_49	KOfam	K14059	int; integrase	NA
UHGV-2180253_49	PHROG	phrog_1	integrase	integration and excision
UHGV-2180253_49	UniRef90	UniRef90_E2ZIE8	Site-specific recombinase, phage integrase family	NA
UHGV-2180253_49	eggNOG-mapper	748224.HMPREF9436_01442	Belongs to the 'phage' integrase family	NA
UHGV-2180253_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2180253_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2180253_49	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2180253_50	PHROG	phrog_6660	NA	unknown function
UHGV-2180253_50	UniRef90	UniRef90_A0A564TNC5	Inorganic triphosphatase	NA
UHGV-2180253_50	eggNOG-mapper	748224.HMPREF9436_01441	NA	NA
UHGV-2180253_50	COG	COG2954	CYTH domain, found in class IV adenylate cyclase and various triphosphatases	NA
UHGV-2180253_50	Structural annotation	PF01928, TIGR00318, COG2954	NA	NA