UHGV-2180660

Genome information

Genome length 22,145 bps

CDS count 34

Completeness 55.14% (medium-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-2180660
vOTU ID	vOTU-042212
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029820\|Ga0245026_101146\|provirus_294_22438
BioSample	SAMEA3708870
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.18
Jumbo phage	No

Genome content
Genome length	22,145 bps
GC content	45.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	90.12%
Average CDS length	591.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2180660_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2180660_1	PHROG	phrog_3088	amidase	lysis
UHGV-2180660_1	UniRef90	UniRef90_UPI001C025321	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2180660_1	eggNOG-mapper	478749.BRYFOR_07646	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-2180660_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2180660_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2180660_1	COG	COG3087	Cell division protein FtsN	NA
UHGV-2180660_1	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG5632	NA	NA
UHGV-2180660_2	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2180660_2	UniRef90	UniRef90_UPI000CFA6BAA	NA	NA
UHGV-2180660_2	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-2180660_2	Pfam	PF14359	NA	DUF4406
UHGV-2180660_2	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2180660_3	PHROG	phrog_3675	NA	unknown function
UHGV-2180660_3	UniRef90	UniRef90_A0A174B2I0	YjcQ protein	NA
UHGV-2180660_3	eggNOG-mapper	585501.HMPREF6123_0838	YjcQ protein	NA
UHGV-2180660_3	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-2180660_3	Structural annotation	PF09639, TIGR04176	NA	NA
UHGV-2180660_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2180660_5	UniRef90	UniRef90_A0A416Q253	Minor capsid protein	NA
UHGV-2180660_5	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2180660_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2180660_5	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2180660_5	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2180660_5	Structural annotation	PF06152	NA	NA
UHGV-2180660_6	PHROG	phrog_25639	NA	unknown function
UHGV-2180660_6	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-2180660_7	PHROG	phrog_533	portal protein	head and packaging
UHGV-2180660_7	UniRef90	UniRef90_A0A6L8XU40	Capsid protein	NA
UHGV-2180660_7	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-2180660_7	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2180660_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2180660_8	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2180660_8	UniRef90	UniRef90_A0A414SEW8	Terminase	NA
UHGV-2180660_8	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-2180660_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-2180660_8	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2180660_9	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2180660_9	UniRef90	UniRef90_UPI001C0F3787	helix-turn-helix domain-containing protein	NA
UHGV-2180660_9	eggNOG-mapper	1522092.A0A090DCM3_9CAUD	endonuclease activity	NA
UHGV-2180660_9	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-2180660_9	Structural annotation	PF07141	NA	NA
UHGV-2180660_11	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2180660_11	UniRef90	UniRef90_A0A174B4K2	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-2180660_11	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-2180660_11	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2180660_11	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2180660_13	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2180660_13	eggNOG-mapper	658655.HMPREF0988_00866	NA	NA
UHGV-2180660_13	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-2180660_14	Structural annotation	PF18350, MF_00369, COG2139	NA	NA
UHGV-2180660_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2180660_17	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2180660_17	UniRef90	UniRef90_A0A174B0Z4	Holliday junction resolvase	NA
UHGV-2180660_17	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-2180660_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2180660_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2180660_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2180660_18	PHROG	phrog_16687	NA	unknown function
UHGV-2180660_19	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2180660_19	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2180660_19	UniRef90	UniRef90_A0A174B086	Primase C terminal 2 (PriCT-2)	NA
UHGV-2180660_19	eggNOG-mapper	411462.DORLON_00808	Primase C terminal 2 (PriCT-2)	NA
UHGV-2180660_19	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2180660_19	Pfam	PF13481	AAA domain	AAA_25
UHGV-2180660_19	COG	COG3598	RecA-family ATPase	NA
UHGV-2180660_19	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2180660_20	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2180660_20	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2180660_20	UniRef90	UniRef90_A0A174B1D7	Type-1 restriction enzyme R protein	NA
UHGV-2180660_20	eggNOG-mapper	411462.DORLON_00809	helicase superfamily c-terminal domain	NA
UHGV-2180660_20	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2180660_20	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2180660_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2180660_20	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2180660_20	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2180660_21	PHROG	phrog_2698	NA	unknown function
UHGV-2180660_21	UniRef90	UniRef90_UPI00189B1EC1	NA	NA
UHGV-2180660_21	eggNOG-mapper	478749.BRYFOR_07585	NA	NA
UHGV-2180660_21	Structural annotation	PF05037	NA	NA
UHGV-2180660_22	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2180660_22	UniRef90	UniRef90_UPI001897B051	AAA family ATPase	NA
UHGV-2180660_22	eggNOG-mapper	1235792.C808_05390	AAA domain	NA
UHGV-2180660_22	Pfam	PF13479	AAA domain	AAA_24
UHGV-2180660_22	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2180660_23	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2180660_23	PHROG	phrog_1499	NA	unknown function
UHGV-2180660_23	UniRef90	UniRef90_A0A174B373	ATPase involved in DNA repair	NA
UHGV-2180660_23	eggNOG-mapper	742723.HMPREF9477_00929	AAA domain	NA
UHGV-2180660_23	Pfam	PF13476	AAA domain	AAA_23
UHGV-2180660_23	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2180660_23	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2180660_24	Structural annotation	PF13384, COG1710	NA	NA
UHGV-2180660_26	PHROG	phrog_6058	NA	unknown function
UHGV-2180660_26	UniRef90	UniRef90_A0A174B0Z1	Helix-turn-helix domain	NA
UHGV-2180660_26	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-2180660_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2180660_26	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-2180660_30	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2180660_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2180660_30	UniRef90	UniRef90_A0A174AZ53	Helix-turn-helix domain	NA
UHGV-2180660_30	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-2180660_30	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2180660_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2180660_30	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2180660_33	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-2180660_33	Structural annotation	PF02701	NA	NA
UHGV-2180660_34	KOfam	K14059	int; integrase	NA
UHGV-2180660_34	PHROG	phrog_1	integrase	integration and excision
UHGV-2180660_34	UniRef90	UniRef90_A0A174AZK7	Site-specific tyrosine recombinase XerC	NA
UHGV-2180660_34	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-2180660_34	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2180660_34	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2180660_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2180660_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2180660_34	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA