UHGV-2181042

Genome information

Genome length 34,560 bps

CDS count 41

Completeness 58.71% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-2181042
vOTU ID	vOTU-021816
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300030030\|Ga0245278_100727\|provirus_11402_45961
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.96
Jumbo phage	No

Genome content
Genome length	34,560 bps
GC content	53.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	93.84%
Average CDS length	793.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2181042_1	PHROG	phrog_2801	NA	unknown function
UHGV-2181042_1	UniRef90	UniRef90_A0A859DSU8	AAA family ATPase	NA
UHGV-2181042_1	eggNOG-mapper	568816.Acin_1942	AAA domain	NA
UHGV-2181042_1	Pfam	PF13166	AAA domain	AAA_13
UHGV-2181042_1	COG	COG4694	Wobble nucleotide-excising tRNase	NA
UHGV-2181042_1	Structural annotation	PF13166, MF_00449, TIGR03185, COG4694	NA	NA
UHGV-2181042_2	eggNOG-mapper	879310.HMPREF9162_1730	NA	NA
UHGV-2181042_3	PHROG	phrog_6948	NA	unknown function
UHGV-2181042_3	eggNOG-mapper	1029718.SFBM_1172	NA	NA
UHGV-2181042_4	PHROG	phrog_13787	NA	unknown function
UHGV-2181042_4	UniRef90	UniRef90_UPI00189EEDD9	ECF-type sigma factor	NA
UHGV-2181042_4	eggNOG-mapper	1127695.HMPREF9163_00401	NA	NA
UHGV-2181042_4	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-2181042_4	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2181042_4	Structural annotation	PF13412, MF_00959, NF006146, COG1191	NA	NA
UHGV-2181042_5	PHROG	phrog_408	NA	unknown function
UHGV-2181042_5	UniRef90	UniRef90_UPI00189E5E1A	DNA ligase	NA
UHGV-2181042_5	eggNOG-mapper	457415.HMPREF1006_00440	NA	NA
UHGV-2181042_6	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2181042_6	UniRef90	UniRef90_UPI001644C826	NA	NA
UHGV-2181042_6	eggNOG-mapper	498761.HM1_2934	NA	NA
UHGV-2181042_6	Pfam	PF10926	NA	DUF2800
UHGV-2181042_6	COG	COG2887	RecB family exonuclease	NA
UHGV-2181042_6	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2181042_7	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2181042_7	UniRef90	UniRef90_A0A410PTP6	NA	NA
UHGV-2181042_7	eggNOG-mapper	457415.HMPREF1006_00442	NA	NA
UHGV-2181042_7	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2181042_7	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2181042_9	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2181042_9	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2181042_9	UniRef90	UniRef90_D4MIP7	DNA polymerase I-3'-5' exonuclease and polymerase domains	NA
UHGV-2181042_9	eggNOG-mapper	1410624.JNKK01000017_gene1958	DNA polymerase A domain	NA
UHGV-2181042_9	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2181042_9	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2181042_9	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2181042_10	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2181042_10	eggNOG-mapper	552396.HMPREF0863_01419	NA	NA
UHGV-2181042_10	Pfam	PF14359	NA	DUF4406
UHGV-2181042_10	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2181042_11	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2181042_11	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2181042_11	UniRef90	UniRef90_UPI0016453462	phage/plasmid primase, P4 family	NA
UHGV-2181042_11	eggNOG-mapper	1410624.JNKK01000017_gene1960	D5 N terminal like	NA
UHGV-2181042_11	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2181042_11	Pfam	PF19263	NA	DUF5906
UHGV-2181042_11	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2181042_11	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2181042_11	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2181042_11	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-2181042_12	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2181042_12	UniRef90	UniRef90_UPI001646F6DA	VRR-NUC domain-containing protein	NA
UHGV-2181042_12	eggNOG-mapper	665956.HMPREF1032_02284	VRR_NUC	NA
UHGV-2181042_12	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-2181042_13	KOfam	K20093	ERCC6L, PICH; DNA excision repair protein ERCC-6-like [EC:5.6.2.-]	NA
UHGV-2181042_13	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2181042_13	UniRef90	UniRef90_UPI0016449736	DEAD/DEAH box helicase	NA
UHGV-2181042_13	eggNOG-mapper	665956.HMPREF1032_02283	helicase	NA
UHGV-2181042_13	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2181042_13	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2181042_13	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2181042_13	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2181042_13	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2181042_14	PHROG	phrog_7024	NA	unknown function
UHGV-2181042_14	eggNOG-mapper	994573.T472_0211090	NA	NA
UHGV-2181042_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2181042_15	UniRef90	UniRef90_A0A7X6CWS4	NA	NA
UHGV-2181042_15	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-2181042_15	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2181042_15	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2181042_16	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2181042_16	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2181042_16	UniRef90	UniRef90_R7ELH0	HNH endonuclease domain protein	NA
UHGV-2181042_16	eggNOG-mapper	1120978.KB894083_gene917	HNH nucleases	NA
UHGV-2181042_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2181042_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2181042_16	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2181042_17	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2181042_17	UniRef90	UniRef90_A0A7X5J169	Terminase	NA
UHGV-2181042_17	eggNOG-mapper	665950.HMPREF1025_02640	NA	NA
UHGV-2181042_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2181042_18	PHROG	phrog_1569	NA	unknown function
UHGV-2181042_18	UniRef90	UniRef90_A0A316RBE0	S-adenosylmethionine synthetase	NA
UHGV-2181042_18	eggNOG-mapper	665950.HMPREF1025_02641	S-adenosylmethionine synthetase, N-terminal domain	NA
UHGV-2181042_18	Pfam	PF00438	S-adenosylmethionine synthetase, N-terminal domain	S-AdoMet_synt_N
UHGV-2181042_18	COG	COG0192	S-adenosylmethionine synthetase	NA
UHGV-2181042_18	Structural annotation	PF01941, MF_00086, TIGR01034, COG0192	NA	NA
UHGV-2181042_19	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2181042_19	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2181042_19	UniRef90	UniRef90_R7ELG5	Methyltransferase	NA
UHGV-2181042_19	eggNOG-mapper	665950.HMPREF1025_02642	DNA methylase	NA
UHGV-2181042_19	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2181042_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2181042_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2181042_19	COG	COG0863	DNA modification methylase	NA
UHGV-2181042_19	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2181042_20	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2181042_20	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2181042_20	UniRef90	UniRef90_R9IRE2	PAPS_reduct domain-containing protein	NA
UHGV-2181042_20	eggNOG-mapper	397291.C804_05219	NA	NA
UHGV-2181042_20	PADLOC	SspD_00001	SspD	SSP
UHGV-2181042_20	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2181042_20	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2181042_20	Structural annotation	PF01507, MF_00064, NF006327, COG0175	NA	NA
UHGV-2181042_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2181042_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2181042_21	UniRef90	UniRef90_R6C729	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2181042_21	eggNOG-mapper	1216932.CM240_1398	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2181042_21	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-2181042_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2181042_21	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2181042_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2181042_21	Structural annotation	TIGR00675	NA	NA
UHGV-2181042_22	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2181042_22	UniRef90	UniRef90_R7ER16	Virulence-related protein	NA
UHGV-2181042_22	eggNOG-mapper	243164.DET0065	NA	NA
UHGV-2181042_22	AcrCatalog	cluster_14489	NA	NA
UHGV-2181042_23	PHROG	phrog_3782	NA	unknown function
UHGV-2181042_23	UniRef90	UniRef90_R7ET71	NA	NA
UHGV-2181042_23	eggNOG-mapper	665950.HMPREF1025_02645	NA	NA
UHGV-2181042_23	Pfam	PF14192	NA	DUF4314
UHGV-2181042_23	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2181042_23	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-2181042_24	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2181042_24	UniRef90	UniRef90_R6CIH8	Putative amidoligase enzyme	NA
UHGV-2181042_24	eggNOG-mapper	1235790.C805_01781	Putative amidoligase enzyme	NA
UHGV-2181042_24	AcrCatalog	cluster_58247	NA	NA
UHGV-2181042_24	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-2181042_24	Structural annotation	PF12224	NA	NA
UHGV-2181042_25	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-2181042_25	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-2181042_25	UniRef90	UniRef90_R6C724	GGACT domain-containing protein	NA
UHGV-2181042_25	eggNOG-mapper	1235802.C823_05283	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-2181042_25	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-2181042_25	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2181042_25	Structural annotation	PF06094, COG2105	NA	NA
UHGV-2181042_26	PHROG	phrog_2945	NA	unknown function
UHGV-2181042_26	UniRef90	UniRef90_D9SLK6	(NiFe) hydrogenase maturation protein HypF	NA
UHGV-2181042_26	eggNOG-mapper	411468.CLOSCI_00212	NA	NA
UHGV-2181042_27	PHROG	phrog_4709	NA	unknown function
UHGV-2181042_27	eggNOG-mapper	693746.OBV_41590	NA	NA
UHGV-2181042_27	AcrCatalog	cluster_3300	NA	NA
UHGV-2181042_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2181042_28	UniRef90	UniRef90_R6CIH0	Putative phage terminase large subunit	NA
UHGV-2181042_28	eggNOG-mapper	552396.HMPREF0863_01433	large subunit	NA
UHGV-2181042_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2181042_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2181042_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2181042_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2181042_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-2181042_29	UniRef90	UniRef90_A0A1E3BX67	Phage portal protein	NA
UHGV-2181042_29	eggNOG-mapper	1216932.CM240_0618	Phage portal protein, HK97 family	NA
UHGV-2181042_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2181042_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2181042_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2181042_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2181042_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2181042_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2181042_30	UniRef90	UniRef90_R6CEE1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2181042_30	eggNOG-mapper	1216932.CM240_0619	Belongs to the peptidase S14 family	NA
UHGV-2181042_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2181042_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2181042_30	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2181042_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-2181042_31	UniRef90	UniRef90_R6C4C2	Phage major capsid protein HK97 family	NA
UHGV-2181042_31	eggNOG-mapper	908340.HMPREF9406_0168	Phage major capsid protein, HK97 family	NA
UHGV-2181042_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2181042_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2181042_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2181042_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2181042_32	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2181042_32	UniRef90	UniRef90_A0A3D2HUK1	Phage gp6-like head-tail connector protein	NA
UHGV-2181042_32	eggNOG-mapper	665950.HMPREF1025_02654	NA	NA
UHGV-2181042_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2181042_32	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2181042_32	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2181042_33	PHROG	phrog_25	head closure Hc1	connector
UHGV-2181042_33	UniRef90	UniRef90_R6C714	Phage head-tail adaptor putative	NA
UHGV-2181042_33	eggNOG-mapper	1120978.KB894083_gene903	Phage head-tail joining protein	NA
UHGV-2181042_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2181042_33	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2181042_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2181042_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2181042_34	UniRef90	UniRef90_A0A412AY96	HK97 gp10 family phage protein	NA
UHGV-2181042_34	eggNOG-mapper	693746.OBV_41500	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-2181042_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2181042_34	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2181042_34	Structural annotation	TIGR01725	NA	NA
UHGV-2181042_35	PHROG	phrog_78	tail terminator	connector
UHGV-2181042_35	eggNOG-mapper	1347392.CCEZ01000015_gene2833	High confidence in function and specificity	NA
UHGV-2181042_35	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2181042_36	PHROG	phrog_88	major tail protein	tail
UHGV-2181042_36	UniRef90	UniRef90_R7EV20	Phi13 family phage major tail protein	NA
UHGV-2181042_36	eggNOG-mapper	1216932.CM240_0623	phage major tail protein, phi13 family	NA
UHGV-2181042_36	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2181042_36	COG	COG5492	NA	NA
UHGV-2181042_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2181042_37	PHROG	phrog_2115	tail protein	tail
UHGV-2181042_37	eggNOG-mapper	1216932.CM240_0624	NA	NA
UHGV-2181042_37	Structural annotation	PF11836	NA	NA
UHGV-2181042_38	eggNOG-mapper	1120978.KB894083_gene898	NA	NA
UHGV-2181042_39	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2181042_39	UniRef90	UniRef90_UPI001F2AF393	phage tail protein	NA
UHGV-2181042_39	eggNOG-mapper	1120978.KB894083_gene897	Phage-related minor tail protein	NA
UHGV-2181042_39	COG	COG5283	Phage-related tail protein	NA
UHGV-2181042_39	Structural annotation	MF_04138, COG5280	NA	NA
UHGV-2181042_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2181042_40	UniRef90	UniRef90_UPI001898A82B	phage tail family protein	NA
UHGV-2181042_40	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-2181042_40	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2181042_40	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2181042_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-2181042_40	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2181042_41	UniRef90	UniRef90_A0A3R6HYR9	Peptidase S51 (Fragment)	NA
UHGV-2181042_41	eggNOG-mapper	216816.GS08_01235	Peptidase family S51	NA
UHGV-2181042_41	COG	COG3340	Peptidase E	NA