UHGV-2181440

Genome information

Genome length 32,059 bps

CDS count 52

Completeness 81.69% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-2181440
vOTU ID	vOTU-018407
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029881\|Ga0245307_1000559\|provirus_4773_43051
BioSample	SAMEA3449357
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.46
Jumbo phage	No

Genome content
Genome length	32,059 bps
GC content	42.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	89.08%
Average CDS length	552.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2181440_1	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2181440_1	UniRef90	UniRef90_A0A1C6K8Q1	Abortive infection bacteriophage resistance protein	NA
UHGV-2181440_1	eggNOG-mapper	476272.RUMHYD_02820	Abi-like protein	NA
UHGV-2181440_1	PADLOC	AbiD	AbiD	Abi
UHGV-2181440_1	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2181440_1	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2181440_1	Structural annotation	PF07751, COG4823	NA	NA
UHGV-2181440_2	PHROG	phrog_87	metallo-protease	other
UHGV-2181440_2	UniRef90	UniRef90_A0A414EG59	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2181440_2	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-2181440_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2181440_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2181440_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2181440_3	PHROG	phrog_27136	NA	unknown function
UHGV-2181440_3	UniRef90	UniRef90_UPI000A966D6C	Zn-ribbon domain-containing protein	NA
UHGV-2181440_3	eggNOG-mapper	1282664.H354_06486	Short C-terminal domain	NA
UHGV-2181440_4	UniRef90	UniRef90_A0A414EGA2	XRE family transcriptional regulator	NA
UHGV-2181440_4	eggNOG-mapper	1235798.C817_00736	addiction module antidote protein HigA	NA
UHGV-2181440_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-2181440_4	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-2181440_5	UniRef90	UniRef90_A0A414EGH7	XRE family transcriptional regulator	NA
UHGV-2181440_5	eggNOG-mapper	1235792.C808_05261	NA	NA
UHGV-2181440_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2181440_6	PHROG	phrog_5765	NA	unknown function
UHGV-2181440_6	UniRef90	UniRef90_A0A6L8XUI5	BC1881 family protein	NA
UHGV-2181440_6	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-2181440_6	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-2181440_7	PHROG	phrog_3292	NA	unknown function
UHGV-2181440_7	UniRef90	UniRef90_A0A414SEZ1	KTSC domain-containing protein	NA
UHGV-2181440_7	eggNOG-mapper	679201.HMPREF9334_01266	KTSC domain	NA
UHGV-2181440_7	Pfam	PF13619	KTSC domain	KTSC
UHGV-2181440_7	Structural annotation	PF13619	NA	NA
UHGV-2181440_9	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-2181440_13	UniRef90	UniRef90_A0A1C5LFH5	DNA binding domain, excisionase family	NA
UHGV-2181440_13	eggNOG-mapper	478749.BRYFOR_07577	Helix-turn-helix domain	NA
UHGV-2181440_13	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2181440_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2181440_16	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-2181440_16	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-2181440_16	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2181440_17	UniRef90	UniRef90_A0A1C5RDL1	Ribonuclease H	NA
UHGV-2181440_17	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-2181440_17	COG	COG0328	Ribonuclease HI	NA
UHGV-2181440_17	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2181440_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2181440_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2181440_18	UniRef90	UniRef90_A0A1C5REE7	Sporulation initiation inhibitor protein soj	NA
UHGV-2181440_18	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-2181440_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-2181440_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2181440_18	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2181440_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2181440_19	PHROG	phrog_15077	NA	unknown function
UHGV-2181440_19	UniRef90	UniRef90_UPI0009306E3C	ParB N-terminal domain-containing protein	NA
UHGV-2181440_19	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-2181440_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2181440_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2181440_19	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-2181440_20	PHROG	phrog_17842	NA	unknown function
UHGV-2181440_21	eggNOG-mapper	1298920.KI911353_gene4860	NA	NA
UHGV-2181440_24	UniRef90	UniRef90_A0A1C5LDM6	Polar chromosome segregation protein	NA
UHGV-2181440_24	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-2181440_24	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-2181440_24	Structural annotation	PF01710, NF040595	NA	NA
UHGV-2181440_26	PHROG	phrog_25456	NA	unknown function
UHGV-2181440_26	Structural annotation	PF17888	NA	NA
UHGV-2181440_28	eggNOG-mapper	1235793.C809_02213	NA	NA
UHGV-2181440_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2181440_30	UniRef90	UniRef90_UPI000931D7F9	RNA polymerase subunit sigma-70	NA
UHGV-2181440_30	eggNOG-mapper	411459.RUMOBE_00943	NA	NA
UHGV-2181440_31	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2181440_31	UniRef90	UniRef90_UPI00164AF235	type II toxin-antitoxin system HicA family toxin	NA
UHGV-2181440_31	eggNOG-mapper	397287.C807_02050	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2181440_31	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2181440_31	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2181440_31	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2181440_32	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2181440_32	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2181440_32	UniRef90	UniRef90_UPI0009302C41	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-2181440_32	eggNOG-mapper	97139.C824_05055	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-2181440_32	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2181440_32	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2181440_32	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2181440_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2181440_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2181440_33	UniRef90	UniRef90_A0A415L5B5	Terminase small subunit	NA
UHGV-2181440_33	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-2181440_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2181440_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2181440_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2181440_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2181440_34	PHROG	phrog_10250	NA	unknown function
UHGV-2181440_34	UniRef90	UniRef90_UPI0011DDB413	terminase	NA
UHGV-2181440_34	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-2181440_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-2181440_34	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2181440_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-2181440_35	UniRef90	UniRef90_UPI0011DCF338	phage portal protein	NA
UHGV-2181440_35	eggNOG-mapper	394503.Ccel_3049	NA	NA
UHGV-2181440_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2181440_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2181440_36	UniRef90	UniRef90_UPI000E43C4DB	ADP-ribosyltransferase domain-containing protein	NA
UHGV-2181440_36	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2181440_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2181440_36	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-2181440_36	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2181440_36	Structural annotation	PF06152, PF03496, MF_04139, NF040688	NA	NA
UHGV-2181440_38	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2181440_38	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-2181440_38	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-2181440_38	Structural annotation	PF14359	NA	NA
UHGV-2181440_40	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2181440_40	UniRef90	UniRef90_UPI001D02A5C9	phage scaffolding protein	NA
UHGV-2181440_40	eggNOG-mapper	1262449.CP6013_3198	Phage minor structural protein GP20	NA
UHGV-2181440_40	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2181440_40	Structural annotation	PF06810	NA	NA
UHGV-2181440_41	PHROG	phrog_212	major head protein	head and packaging
UHGV-2181440_41	UniRef90	UniRef90_A0A416Q289	Phage capsid protein	NA
UHGV-2181440_41	eggNOG-mapper	1294142.CINTURNW_1029	NA	NA
UHGV-2181440_41	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2181440_42	PHROG	phrog_15682	NA	unknown function
UHGV-2181440_42	eggNOG-mapper	469618.FVAG_01311	NA	NA
UHGV-2181440_43	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2181440_43	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-2181440_44	PHROG	phrog_8710	NA	unknown function
UHGV-2181440_44	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-2181440_44	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2181440_45	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2181440_45	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-2181440_46	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2181440_46	UniRef90	UniRef90_UPI001C0EB705	minor capsid protein	NA
UHGV-2181440_46	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-2181440_46	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2181440_46	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2181440_47	PHROG	phrog_820	major tail protein	tail
UHGV-2181440_47	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-2181440_47	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2181440_48	PHROG	phrog_8300	NA	unknown function
UHGV-2181440_48	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-2181440_48	Structural annotation	PF06854	NA	NA
UHGV-2181440_49	PHROG	phrog_8355	NA	unknown function
UHGV-2181440_49	UniRef90	UniRef90_UPI001F2CFAB2	bacteriophage Gp15 family protein	NA
UHGV-2181440_49	eggNOG-mapper	483218.BACPEC_01147	Bacteriophage Gp15 protein	NA
UHGV-2181440_50	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2181440_50	UniRef90	UniRef90_A0A1C5RGR7	Phage-related protein	NA
UHGV-2181440_50	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-2181440_50	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2181440_50	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2181440_51	PHROG	phrog_1194	NA	unknown function
UHGV-2181440_51	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-2181440_51	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2181440_52	PHROG	phrog_6616	tail protein	tail
UHGV-2181440_52	UniRef90	UniRef90_A0A414EG21	Tail fiber domain-containing protein	NA
UHGV-2181440_52	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-2181440_52	COG	COG4926	Phage-related protein	NA
UHGV-2181440_52	Structural annotation	PF05113, NF033848, COG3500	NA	NA