UHGV-2181573

Genome information

Genome length 33,663 bps

CDS count 55

Completeness 89.12% (medium-quality)

geNomad score 0.9697

Prediction confidence Confident

Genome information
Genome ID	UHGV-2181573
vOTU ID	vOTU-042214
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029847\|Ga0245281_100566\|provirus_14452_53043
BioSample	SAMEA3449332
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9697
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.74
Jumbo phage	No

Genome content
Genome length	33,663 bps
GC content	49.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	93.32%
Average CDS length	576.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2181573_2	UniRef90	UniRef90_A0A351F9G2	RHH_1 domain-containing protein	NA
UHGV-2181573_2	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-2181573_6	PHROG	phrog_263	holin	lysis
UHGV-2181573_6	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-2181573_6	eggNOG-mapper	315750.BPUM_3085	SPP1 phage holin	NA
UHGV-2181573_6	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2181573_6	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2181573_6	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-2181573_7	PHROG	phrog_9428	NA	unknown function
UHGV-2181573_7	UniRef90	UniRef90_A0A3D5TMQ6	Serine/threonine protein kinase	NA
UHGV-2181573_7	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-2181573_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2181573_8	PHROG	phrog_435	endolysin	lysis
UHGV-2181573_8	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-2181573_8	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-2181573_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2181573_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2181573_8	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-2181573_11	Structural annotation	PF02973	NA	NA
UHGV-2181573_12	Structural annotation	PF10651	NA	NA
UHGV-2181573_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2181573_14	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-2181573_14	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2181573_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2181573_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2181573_14	COG	COG4926	Phage-related protein	NA
UHGV-2181573_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2181573_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2181573_15	UniRef90	UniRef90_UPI00189E4294	phage tail family protein	NA
UHGV-2181573_15	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-2181573_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-2181573_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2181573_16	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2181573_16	UniRef90	UniRef90_A0A7X8V908	Phage tail protein	NA
UHGV-2181573_16	eggNOG-mapper	1122143.AUEG01000001_gene548	Phage-related minor tail protein	NA
UHGV-2181573_16	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-2181573_16	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-2181573_17	PHROG	phrog_2115	tail protein	tail
UHGV-2181573_17	Structural annotation	PF11836	NA	NA
UHGV-2181573_19	PHROG	phrog_88	major tail protein	tail
UHGV-2181573_19	UniRef90	UniRef90_UPI00148B0F18	major tail protein	NA
UHGV-2181573_19	eggNOG-mapper	97139.C824_05965	NA	NA
UHGV-2181573_20	PHROG	phrog_78	tail terminator	connector
UHGV-2181573_20	eggNOG-mapper	1238184.CM001792_gene2512	NA	NA
UHGV-2181573_20	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2181573_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2181573_21	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-2181573_21	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-2181573_21	Structural annotation	TIGR01725	NA	NA
UHGV-2181573_22	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2181573_22	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-2181573_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2181573_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2181573_23	UniRef90	UniRef90_UPI0006544DF9	head-tail connector protein	NA
UHGV-2181573_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2181573_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2181573_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2181573_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-2181573_24	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-2181573_24	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-2181573_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2181573_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2181573_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2181573_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2181573_25	PHROG	phrog_16951	NA	unknown function
UHGV-2181573_25	eggNOG-mapper	246199.CUS_7602	NA	NA
UHGV-2181573_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2181573_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-2181573_26	UniRef90	UniRef90_UPI001C11FE4E	phage portal protein	NA
UHGV-2181573_26	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-2181573_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2181573_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2181573_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2181573_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2181573_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2181573_27	UniRef90	UniRef90_UPI000C7CE66A	terminase large subunit	NA
UHGV-2181573_27	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-2181573_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2181573_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2181573_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2181573_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2181573_28	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2181573_28	UniRef90	UniRef90_UPI00067FA7FA	phage terminase small subunit P27 family	NA
UHGV-2181573_28	eggNOG-mapper	536232.CLM_2059	Phage terminase, small subunit	NA
UHGV-2181573_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2181573_28	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2181573_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2181573_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2181573_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2181573_29	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2181573_29	UniRef90	UniRef90_UPI0005E9BBAD	HNH endonuclease	NA
UHGV-2181573_29	eggNOG-mapper	1508644.SFBmNL_00838	HNH endonuclease	NA
UHGV-2181573_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2181573_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2181573_29	Structural annotation	PF05766	NA	NA
UHGV-2181573_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2181573_30	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-2181573_30	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-2181573_30	Structural annotation	PF04545	NA	NA
UHGV-2181573_33	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2181573_33	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-2181573_33	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-2181573_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2181573_34	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2181573_34	UniRef90	UniRef90_A0A0K1LJA3	DNA methylase	NA
UHGV-2181573_34	eggNOG-mapper	1327981.R9ZYG2_9CAUD	helicase activity	NA
UHGV-2181573_34	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2181573_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2181573_34	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-2181573_36	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-2181573_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2181573_36	eggNOG-mapper	537013.CLOSTMETH_02010	Helix-turn-helix XRE-family like proteins	NA
UHGV-2181573_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2181573_36	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2181573_37	PHROG	phrog_15609	NA	unknown function
UHGV-2181573_37	UniRef90	UniRef90_A0A7G9WGA3	NA	NA
UHGV-2181573_37	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-2181573_37	Pfam	PF11300	NA	DUF3102
UHGV-2181573_37	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2181573_38	PHROG	phrog_8470	NA	unknown function
UHGV-2181573_38	UniRef90	UniRef90_UPI001C1DCAAD	PcfJ domain-containing protein	NA
UHGV-2181573_38	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-2181573_38	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2181573_38	Structural annotation	PF14284	NA	NA
UHGV-2181573_39	PHROG	phrog_7445	NA	unknown function
UHGV-2181573_39	UniRef90	UniRef90_UPI001B3C69A2	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2181573_39	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-2181573_39	Structural annotation	PF14058	NA	NA
UHGV-2181573_41	PHROG	phrog_824	NA	unknown function
UHGV-2181573_41	UniRef90	UniRef90_A0A3D5TLJ2	VRR-NUC domain-containing protein	NA
UHGV-2181573_41	eggNOG-mapper	1235792.C808_00075	VRR_NUC	NA
UHGV-2181573_41	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2181573_41	Structural annotation	PF08774, COG1996	NA	NA
UHGV-2181573_45	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2181573_45	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2181573_45	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2181573_45	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-2181573_47	PHROG	phrog_22040	NA	unknown function
UHGV-2181573_47	Structural annotation	PF07073, COG4568	NA	NA
UHGV-2181573_49	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2181573_49	PHROG	phrog_18750	NA	unknown function
UHGV-2181573_49	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-2181573_49	eggNOG-mapper	1203606.HMPREF1526_01876	Cell wall hydrolase	NA
UHGV-2181573_49	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-2181573_49	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-2181573_49	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-2181573_51	PHROG	phrog_6058	NA	unknown function
UHGV-2181573_51	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-2181573_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2181573_52	UniRef90	UniRef90_A0A2N0ULV0	Helix-turn-helix domain protein	NA
UHGV-2181573_52	eggNOG-mapper	1211844.CBLM010000016_gene1521	Helix-turn-helix XRE-family like proteins	NA
UHGV-2181573_52	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-2181573_53	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2181573_53	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2181573_53	UniRef90	UniRef90_R5L1M5	DNA-binding helix-turn-helix / peptidase S24-like multi-domain protein	NA
UHGV-2181573_53	eggNOG-mapper	634956.Geoth_0743	Peptidase S24-like	NA
UHGV-2181573_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2181573_53	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2181573_53	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2181573_53	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2181573_54	Structural annotation	PF08797, TIGR00086	NA	NA
UHGV-2181573_55	KOfam	K14059	int; integrase	NA
UHGV-2181573_55	PHROG	phrog_1	integrase	integration and excision
UHGV-2181573_55	UniRef90	UniRef90_A0A7K4BXA9	Site-specific integrase	NA
UHGV-2181573_55	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-2181573_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2181573_55	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2181573_55	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA